RNA–Protein interactions for RNA: ENST00000448192.1

DDX56-207, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 691 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-207ENST00000448192 NISCHQ9Y2I1 1504 aa43.7■■■■■ 4.59
DDX56-207ENST00000448192 CCDC180Q9P1Z9 1646 aa39.07■■■■□ 3.85
DDX56-207ENST00000448192 ABCC9O60706 1549 aa38.71■■■■□ 3.79
DDX56-207ENST00000448192 RB1CC1Q8TDY2 1594 aa37.01■■■■□ 3.52
DDX56-207ENST00000448192 NACADO15069 1562 aa36.83■■■■□ 3.49
DDX56-207ENST00000448192 DCAF8L2P0C7V8 631 aa36.81■■■■□ 3.48
DDX56-207ENST00000448192 MYO15BQ96JP2 1530 aa36.39■■■■□ 3.42
DDX56-207ENST00000448192 ZCCHC6Q5VYS8 1495 aaKnown RBP36.29■■■■□ 3.4
DDX56-207ENST00000448192 UNC13AQ9UPW8 1703 aa36.23■■■■□ 3.39
DDX56-207ENST00000448192 PABPN1Q86U42 306 aaKnown RBP eCLIP36.1■■■■□ 3.375e-8■■■■□ 20.2
DDX56-207ENST00000448192 DCAF1Q9Y4B6 1507 aa36.08■■■■□ 3.37
DDX56-207ENST00000448192 DNAJC5BQ9UF47 199 aa35.93■■■■□ 3.34
DDX56-207ENST00000448192 BICRAQ9NZM4 1560 aa35.89■■■■□ 3.34
DDX56-207ENST00000448192 SCRIBQ14160 1630 aa35.66■■■■□ 3.3
DDX56-207ENST00000448192 SHROOM4Q9ULL8 1493 aa35.4■■■■□ 3.26
DDX56-207ENST00000448192 EIF4G1Q04637 1599 aaKnown RBP35■■■■□ 3.19
DDX56-207ENST00000448192 CC2D2AQ9P2K1 1620 aa34.99■■■■□ 3.19
DDX56-207ENST00000448192 CECR2Q9BXF3 1484 aa34.81■■■■□ 3.16
DDX56-207ENST00000448192 SMARCA4P51532 1647 aa34.04■■■■□ 3.04
DDX56-207ENST00000448192 NCAPD3P42695 1498 aa33.96■■■■□ 3.03
DDX56-207ENST00000448192 ATAD2BQ9ULI0 1458 aa33.94■■■■□ 3.02
DDX56-207ENST00000448192 BAZ1AQ9NRL2 1556 aaPredicted RBP33.9■■■■□ 3.02
DDX56-207ENST00000448192 SMARCA2P51531 1590 aa33.88■■■■□ 3.01
DDX56-207ENST00000448192 HMGXB3Q12766 1538 aa33.77■■■■□ 3
DDX56-207ENST00000448192 MROH2BQ7Z745 1585 aa33.69■■■□□ 2.98
DDX56-207ENST00000448192 BAZ1BQ9UIG0 1483 aaKnown RBP33.66■■■□□ 2.98
DDX56-207ENST00000448192 PEG3Q9GZU2 1588 aa33.65■■■□□ 2.98
DDX56-207ENST00000448192 ERCC6Q03468 1493 aa33.41■■■□□ 2.94
DDX56-207ENST00000448192 NESP48681 1621 aa33.36■■■□□ 2.93
DDX56-207ENST00000448192 WIZO95785 1651 aa33.35■■■□□ 2.93
DDX56-207ENST00000448192 LAMC3Q9Y6N6 1575 aa33.18■■■□□ 2.9
DDX56-207ENST00000448192 CUX2O14529 1486 aa33.16■■■□□ 2.9
DDX56-207ENST00000448192 RSF1Q96T23 1441 aaPredicted RBP33.11■■■□□ 2.89
DDX56-207ENST00000448192 KIF21AQ7Z4S6 1674 aa32.99■■■□□ 2.87
DDX56-207ENST00000448192 CADPSQ9ULU8 1353 aa32.96■■■□□ 2.87
DDX56-207ENST00000448192 PDS5BQ9NTI5 1447 aa32.96■■■□□ 2.87
DDX56-207ENST00000448192 THOC2Q8NI27 1593 aaKnown RBP32.94■■■□□ 2.86
DDX56-207ENST00000448192 TOP2AP11388 1531 aaKnown RBP32.91■■■□□ 2.86
DDX56-207ENST00000448192 DNAJC5Q9H3Z4 198 aa32.7■■■□□ 2.83
DDX56-207ENST00000448192 CFTRP13569 1480 aa32.67■■■□□ 2.82
DDX56-207ENST00000448192 MRC2Q9UBG0 1479 aa32.66■■■□□ 2.82
DDX56-207ENST00000448192 CEP164Q9UPV0 1460 aa32.62■■■□□ 2.81
DDX56-207ENST00000448192 FANCD2Q9BXW9 1451 aa32.61■■■□□ 2.81
DDX56-207ENST00000448192 WDR62O43379 1518 aa32.56■■■□□ 2.8
DDX56-207ENST00000448192 CCDC88BA6NC98 1476 aa32.54■■■□□ 2.8
DDX56-207ENST00000448192 PRDM2Q13029 1718 aa32.47■■■□□ 2.79
DDX56-207ENST00000448192 URB2Q14146 1524 aaKnown RBP32.31■■■□□ 2.76
DDX56-207ENST00000448192 TOPBP1Q92547 1522 aa32.04■■■□□ 2.72
DDX56-207ENST00000448192 SUPT5HO00267 1087 aaKnown RBP32.02■■■□□ 2.72
DDX56-207ENST00000448192 ABCC8Q09428 1581 aa31.99■■■□□ 2.71
DDX56-207ENST00000448192 DNMBPQ6XZF7 1577 aa31.96■■■□□ 2.71
DDX56-207ENST00000448192 IFT140Q96RY7 1462 aa31.93■■■□□ 2.7
DDX56-207ENST00000448192 ZNF608Q9ULD9 1512 aaPredicted RBP31.85■■■□□ 2.69
DDX56-207ENST00000448192 TARBP1Q13395 1621 aaKnown RBP31.74■■■□□ 2.67
DDX56-207ENST00000448192 POLA1P09884 1462 aaPredicted RBP31.73■■■□□ 2.67
DDX56-207ENST00000448192 OSCARQ8IYS5 282 aa31.73■■■□□ 2.67
DDX56-207ENST00000448192 EIF4G3O43432 1585 aaKnown RBP31.73■■■□□ 2.67
DDX56-207ENST00000448192 CUX1P39880 1505 aa31.64■■■□□ 2.66
DDX56-207ENST00000448192 AQRO60306 1485 aaKnown RBP eCLIP31.63■■■□□ 2.651e-7■■■■■ 27.2
DDX56-207ENST00000448192 RAD54L2Q9Y4B4 1467 aa31.63■■■□□ 2.65
DDX56-207ENST00000448192 FGD5Q6ZNL6 1462 aa31.6■■■□□ 2.65
DDX56-207ENST00000448192 SOGA1O94964 1423 aa31.6■■■□□ 2.65
DDX56-207ENST00000448192 TRIM41Q8WV44 630 aa31.51■■■□□ 2.63
DDX56-207ENST00000448192 TDRD9Q8NDG6 1382 aaKnown RBP31.5■■■□□ 2.63
DDX56-207ENST00000448192 CHD1O14646 1710 aa31.46■■■□□ 2.63
DDX56-207ENST00000448192 WDR97A6NE52 1622 aa31.42■■■□□ 2.62
DDX56-207ENST00000448192 FBLN2P98095 1184 aa31.39■■■□□ 2.62
DDX56-207ENST00000448192 SNAPC4Q5SXM2 1469 aa31.32■■■□□ 2.6
DDX56-207ENST00000448192 RIMBP3CA6NJZ7 1639 aa31.31■■■□□ 2.6
DDX56-207ENST00000448192 RIMBP3BA6NNM3 1639 aa31.31■■■□□ 2.6
DDX56-207ENST00000448192 RIMBP3Q9UFD9 1639 aa31.31■■■□□ 2.6
DDX56-207ENST00000448192 GRIN2BQ13224 1484 aa31.28■■■□□ 2.6
DDX56-207ENST00000448192 WRNQ14191 1432 aaPredicted RBP eCLIP31.25■■■□□ 2.59
DDX56-207ENST00000448192 BIVM-ERCC5R4GMW8 1640 aa31.25■■■□□ 2.59
DDX56-207ENST00000448192 PBRM1Q86U86 1689 aa31.25■■■□□ 2.59
DDX56-207ENST00000448192 ABCA10Q8WWZ4 1543 aa31.24■■■□□ 2.59
DDX56-207ENST00000448192 TOP2BQ02880 1626 aa31.24■■■□□ 2.59
DDX56-207ENST00000448192 GAPVD1Q14C86 1478 aa31.23■■■□□ 2.59
DDX56-207ENST00000448192 MAGI1Q96QZ7 1491 aaPredicted RBP31.23■■■□□ 2.59
DDX56-207ENST00000448192 SYNJ1O43426 1573 aa31.22■■■□□ 2.59
DDX56-207ENST00000448192 ARHGEF11O15085 1522 aa31.22■■■□□ 2.59
DDX56-207ENST00000448192 CHMP7Q8WUX9 453 aaPredicted RBP31.19■■■□□ 2.58
DDX56-207ENST00000448192 ABCA5Q8WWZ7 1642 aa31.18■■■□□ 2.58
DDX56-207ENST00000448192 SYNJ2O15056 1496 aa31.13■■■□□ 2.57
DDX56-207ENST00000448192 CLASP1Q7Z460 1538 aa31.03■■■□□ 2.56
DDX56-207ENST00000448192 CYB5RLQ6IPT4 315 aa31■■■□□ 2.55
DDX56-207ENST00000448192 ARAP1Q96P48 1450 aa30.93■■■□□ 2.54
DDX56-207ENST00000448192 ADAMTS12P58397 1594 aa30.92■■■□□ 2.54
DDX56-207ENST00000448192 GRIN2AQ12879 1464 aa30.88■■■□□ 2.53
DDX56-207ENST00000448192 ERICH3Q5RHP9 1530 aa30.87■■■□□ 2.53
DDX56-207ENST00000448192 FHAD1B1AJZ9 1412 aa30.83■■■□□ 2.53
DDX56-207ENST00000448192 CEP170Q5SW79 1584 aa30.77■■■□□ 2.52
DDX56-207ENST00000448192 NUP160Q12769 1436 aa30.73■■■□□ 2.51
DDX56-207ENST00000448192 KIF27Q86VH2 1401 aa30.63■■■□□ 2.49
DDX56-207ENST00000448192 ERCC6L2Q5T890 1561 aa30.61■■■□□ 2.49
DDX56-207ENST00000448192 SHROOM2Q13796 1616 aa30.58■■■□□ 2.49
DDX56-207ENST00000448192 TRHP20396 242 aaPredicted RBP30.56■■■□□ 2.48
DDX56-207ENST00000448192 IGF1RP08069 1367 aa30.55■■■□□ 2.48
DDX56-207ENST00000448192 CUL7Q14999 1698 aa30.53■■■□□ 2.48
DDX56-207ENST00000448192 RUSC2Q8N2Y8 1516 aa30.48■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms