RNA–Protein interactions for RNA: ENST00000447216.2

TRAPPC4-203, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 980 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-203ENST00000447216 NISCHQ9Y2I1 1504 aa42.59■■■■■ 4.41
TRAPPC4-203ENST00000447216 CCDC180Q9P1Z9 1646 aa37.61■■■■□ 3.61
TRAPPC4-203ENST00000447216 ABCC9O60706 1549 aa36.25■■■■□ 3.39
TRAPPC4-203ENST00000447216 ZCCHC6Q5VYS8 1495 aaKnown RBP35.6■■■■□ 3.29
TRAPPC4-203ENST00000447216 DCAF8L2P0C7V8 631 aa35.39■■■■□ 3.26
TRAPPC4-203ENST00000447216 DCAF1Q9Y4B6 1507 aa35.2■■■■□ 3.23
TRAPPC4-203ENST00000447216 NACADO15069 1562 aa35.16■■■■□ 3.22
TRAPPC4-203ENST00000447216 MYO15BQ96JP2 1530 aa35.08■■■■□ 3.21
TRAPPC4-203ENST00000447216 RB1CC1Q8TDY2 1594 aa35.08■■■■□ 3.21
TRAPPC4-203ENST00000447216 UNC13AQ9UPW8 1703 aa34.46■■■■□ 3.11
TRAPPC4-203ENST00000447216 SCRIBQ14160 1630 aa34.45■■■■□ 3.11
TRAPPC4-203ENST00000447216 SHROOM4Q9ULL8 1493 aa34.15■■■■□ 3.06
TRAPPC4-203ENST00000447216 BICRAQ9NZM4 1560 aa34.05■■■■□ 3.04
TRAPPC4-203ENST00000447216 PABPN1Q86U42 306 aaKnown RBP eCLIP33.98■■■■□ 3.03
TRAPPC4-203ENST00000447216 CECR2Q9BXF3 1484 aa33.17■■■□□ 2.9
TRAPPC4-203ENST00000447216 EIF4G1Q04637 1599 aaKnown RBP33.07■■■□□ 2.88
TRAPPC4-203ENST00000447216 BAZ1AQ9NRL2 1556 aaPredicted RBP32.96■■■□□ 2.87
TRAPPC4-203ENST00000447216 SMARCA4P51532 1647 aa32.95■■■□□ 2.87
TRAPPC4-203ENST00000447216 MROH2BQ7Z745 1585 aa32.88■■■□□ 2.85
TRAPPC4-203ENST00000447216 CC2D2AQ9P2K1 1620 aa32.81■■■□□ 2.84
TRAPPC4-203ENST00000447216 DNAJC5BQ9UF47 199 aa32.7■■■□□ 2.83
TRAPPC4-203ENST00000447216 RSF1Q96T23 1441 aaPredicted RBP32.69■■■□□ 2.82
TRAPPC4-203ENST00000447216 WIZO95785 1651 aa32.62■■■□□ 2.81
TRAPPC4-203ENST00000447216 ATAD2BQ9ULI0 1458 aa32.57■■■□□ 2.8
TRAPPC4-203ENST00000447216 SMARCA2P51531 1590 aa32.55■■■□□ 2.8
TRAPPC4-203ENST00000447216 PEG3Q9GZU2 1588 aa32.55■■■□□ 2.8
TRAPPC4-203ENST00000447216 NCAPD3P42695 1498 aa32.42■■■□□ 2.78
TRAPPC4-203ENST00000447216 SUPT5HO00267 1087 aaKnown RBP32.41■■■□□ 2.78
TRAPPC4-203ENST00000447216 BAZ1BQ9UIG0 1483 aaKnown RBP32.35■■■□□ 2.77
TRAPPC4-203ENST00000447216 HMGXB3Q12766 1538 aa32.34■■■□□ 2.77
TRAPPC4-203ENST00000447216 TOP2AP11388 1531 aaKnown RBP32.22■■■□□ 2.75
TRAPPC4-203ENST00000447216 CCDC88BA6NC98 1476 aa31.85■■■□□ 2.69
TRAPPC4-203ENST00000447216 NESP48681 1621 aa31.57■■■□□ 2.64
TRAPPC4-203ENST00000447216 CADPSQ9ULU8 1353 aa31.52■■■□□ 2.64
TRAPPC4-203ENST00000447216 LAMC3Q9Y6N6 1575 aa31.5■■■□□ 2.63
TRAPPC4-203ENST00000447216 CFTRP13569 1480 aa31.46■■■□□ 2.63
TRAPPC4-203ENST00000447216 PRDM2Q13029 1718 aa31.42■■■□□ 2.62
TRAPPC4-203ENST00000447216 KIF21AQ7Z4S6 1674 aa31.26■■■□□ 2.6
TRAPPC4-203ENST00000447216 PDS5BQ9NTI5 1447 aa31.23■■■□□ 2.59
TRAPPC4-203ENST00000447216 FANCD2Q9BXW9 1451 aa31.2■■■□□ 2.58
TRAPPC4-203ENST00000447216 ERCC6Q03468 1493 aa31.15■■■□□ 2.58
TRAPPC4-203ENST00000447216 CEP164Q9UPV0 1460 aa31.1■■■□□ 2.57
TRAPPC4-203ENST00000447216 ABCC8Q09428 1581 aa30.96■■■□□ 2.55
TRAPPC4-203ENST00000447216 THOC2Q8NI27 1593 aaKnown RBP30.94■■■□□ 2.54
TRAPPC4-203ENST00000447216 MRC2Q9UBG0 1479 aa30.92■■■□□ 2.54
TRAPPC4-203ENST00000447216 URB2Q14146 1524 aaKnown RBP30.88■■■□□ 2.53
TRAPPC4-203ENST00000447216 CUX1P39880 1505 aa30.82■■■□□ 2.52
TRAPPC4-203ENST00000447216 DNMBPQ6XZF7 1577 aa30.8■■■□□ 2.52
TRAPPC4-203ENST00000447216 WRNQ14191 1432 aaPredicted RBP eCLIP30.8■■■□□ 2.52
TRAPPC4-203ENST00000447216 WDR62O43379 1518 aa30.79■■■□□ 2.52
TRAPPC4-203ENST00000447216 TOPBP1Q92547 1522 aa30.78■■■□□ 2.52
TRAPPC4-203ENST00000447216 SYNJ1O43426 1573 aa30.76■■■□□ 2.52
TRAPPC4-203ENST00000447216 BIVM-ERCC5R4GMW8 1640 aa30.71■■■□□ 2.51
TRAPPC4-203ENST00000447216 TOP2BQ02880 1626 aa30.69■■■□□ 2.5
TRAPPC4-203ENST00000447216 FGD5Q6ZNL6 1462 aa30.6■■■□□ 2.49
TRAPPC4-203ENST00000447216 CHIC1Q5VXU3 224 aa30.58■■■□□ 2.49
TRAPPC4-203ENST00000447216 POLA1P09884 1462 aaPredicted RBP30.56■■■□□ 2.48
TRAPPC4-203ENST00000447216 CUX2O14529 1486 aa30.54■■■□□ 2.48
TRAPPC4-203ENST00000447216 TRIM41Q8WV44 630 aa30.51■■■□□ 2.47
TRAPPC4-203ENST00000447216 RAD54L2Q9Y4B4 1467 aa30.46■■■□□ 2.47
TRAPPC4-203ENST00000447216 SOGA1O94964 1423 aa30.43■■■□□ 2.46
TRAPPC4-203ENST00000447216 TARBP1Q13395 1621 aaKnown RBP30.42■■■□□ 2.46
TRAPPC4-203ENST00000447216 IFT140Q96RY7 1462 aa30.39■■■□□ 2.46
TRAPPC4-203ENST00000447216 WDR97A6NE52 1622 aa30.36■■■□□ 2.45
TRAPPC4-203ENST00000447216 ABCA10Q8WWZ4 1543 aa30.29■■■□□ 2.44
TRAPPC4-203ENST00000447216 ZNF608Q9ULD9 1512 aaPredicted RBP30.27■■■□□ 2.44
TRAPPC4-203ENST00000447216 TDRD9Q8NDG6 1382 aaKnown RBP30.21■■■□□ 2.43
TRAPPC4-203ENST00000447216 EIF4G3O43432 1585 aaKnown RBP30.2■■■□□ 2.42
TRAPPC4-203ENST00000447216 AQRO60306 1485 aaKnown RBP eCLIP30.18■■■□□ 2.427e-9■■■■■ 35.6
TRAPPC4-203ENST00000447216 ABCA5Q8WWZ7 1642 aa30.16■■■□□ 2.42
TRAPPC4-203ENST00000447216 RUSC2Q8N2Y8 1516 aa30.12■■■□□ 2.41
TRAPPC4-203ENST00000447216 GAPVD1Q14C86 1478 aa30.1■■■□□ 2.41
TRAPPC4-203ENST00000447216 PBRM1Q86U86 1689 aa30.1■■■□□ 2.41
TRAPPC4-203ENST00000447216 KIF27Q86VH2 1401 aa30.08■■■□□ 2.41
TRAPPC4-203ENST00000447216 GRIN2BQ13224 1484 aa29.99■■■□□ 2.39
TRAPPC4-203ENST00000447216 FAM9AQ8IZU1 332 aaPredicted RBP29.96■■■□□ 2.39
TRAPPC4-203ENST00000447216 ERICH3Q5RHP9 1530 aa29.93■■■□□ 2.38
TRAPPC4-203ENST00000447216 SNAPC4Q5SXM2 1469 aa29.91■■■□□ 2.38
TRAPPC4-203ENST00000447216 IGF1RP08069 1367 aa29.9■■■□□ 2.38
TRAPPC4-203ENST00000447216 EEA1Q15075 1411 aa29.89■■■□□ 2.38
TRAPPC4-203ENST00000447216 ADAMTS12P58397 1594 aa29.83■■■□□ 2.37
TRAPPC4-203ENST00000447216 MAGI1Q96QZ7 1491 aaPredicted RBP29.83■■■□□ 2.37
TRAPPC4-203ENST00000447216 CUL7Q14999 1698 aa29.82■■■□□ 2.36
TRAPPC4-203ENST00000447216 CSRNP3Q8WYN3 585 aa29.81■■■□□ 2.36
TRAPPC4-203ENST00000447216 CHD1O14646 1710 aa29.76■■■□□ 2.36
TRAPPC4-203ENST00000447216 FHAD1B1AJZ9 1412 aa29.75■■■□□ 2.35
TRAPPC4-203ENST00000447216 CARMIL1Q5VZK9 1371 aa29.75■■■□□ 2.35
TRAPPC4-203ENST00000447216 SYNJ2O15056 1496 aa29.71■■■□□ 2.35
TRAPPC4-203ENST00000447216 FBLN2P98095 1184 aa29.69■■■□□ 2.34
TRAPPC4-203ENST00000447216 PRXQ9BXM0 1461 aa29.68■■■□□ 2.34
TRAPPC4-203ENST00000447216 CHMP7Q8WUX9 453 aaPredicted RBP29.66■■■□□ 2.34
TRAPPC4-203ENST00000447216 RAPGEF2Q9Y4G8 1499 aa29.63■■■□□ 2.33
TRAPPC4-203ENST00000447216 GRIN2AQ12879 1464 aa29.62■■■□□ 2.33
TRAPPC4-203ENST00000447216 KIF21BO75037 1637 aa29.62■■■□□ 2.33
TRAPPC4-203ENST00000447216 EHMT2Q96KQ7 1210 aa29.59■■■□□ 2.33
TRAPPC4-203ENST00000447216 CEP170Q5SW79 1584 aa29.5■■■□□ 2.31
TRAPPC4-203ENST00000447216 GOLGA3Q08378 1498 aa29.47■■■□□ 2.31
TRAPPC4-203ENST00000447216 NUP160Q12769 1436 aa29.44■■■□□ 2.3
TRAPPC4-203ENST00000447216 CTTNBP2Q8WZ74 1663 aa29.43■■■□□ 2.3
TRAPPC4-203ENST00000447216 OSCARQ8IYS5 282 aa29.39■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms