RNA–Protein interactions for RNA: ENST00000447041.6

COL9A1-205, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 4

Gene COL9A1, Length 690 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-205ENST00000447041 NISCHQ9Y2I1 1504 aa45.49■■■■■ 4.87
COL9A1-205ENST00000447041 CCDC180Q9P1Z9 1646 aa40.77■■■■■ 4.12
COL9A1-205ENST00000447041 ABCC9O60706 1549 aa40.55■■■■■ 4.08
COL9A1-205ENST00000447041 RB1CC1Q8TDY2 1594 aa38.68■■■■□ 3.78
COL9A1-205ENST00000447041 NACADO15069 1562 aa38.44■■■■□ 3.74
COL9A1-205ENST00000447041 DCAF8L2P0C7V8 631 aa38.23■■■■□ 3.71
COL9A1-205ENST00000447041 MYO15BQ96JP2 1530 aa37.97■■■■□ 3.67
COL9A1-205ENST00000447041 UNC13AQ9UPW8 1703 aa37.89■■■■□ 3.66
COL9A1-205ENST00000447041 DNAJC5BQ9UF47 199 aa37.8■■■■□ 3.64
COL9A1-205ENST00000447041 ZCCHC6Q5VYS8 1495 aaKnown RBP37.78■■■■□ 3.64
COL9A1-205ENST00000447041 PABPN1Q86U42 306 aaKnown RBP eCLIP37.74■■■■□ 3.63
COL9A1-205ENST00000447041 BICRAQ9NZM4 1560 aa37.58■■■■□ 3.61
COL9A1-205ENST00000447041 DCAF1Q9Y4B6 1507 aa37.57■■■■□ 3.61
COL9A1-205ENST00000447041 SCRIBQ14160 1630 aa37.19■■■■□ 3.54
COL9A1-205ENST00000447041 SHROOM4Q9ULL8 1493 aa37.04■■■■□ 3.52
COL9A1-205ENST00000447041 CC2D2AQ9P2K1 1620 aa36.66■■■■□ 3.46
COL9A1-205ENST00000447041 EIF4G1Q04637 1599 aaKnown RBP36.63■■■■□ 3.45
COL9A1-205ENST00000447041 CECR2Q9BXF3 1484 aa36.48■■■■□ 3.43
COL9A1-205ENST00000447041 SMARCA4P51532 1647 aa35.48■■■■□ 3.27
COL9A1-205ENST00000447041 NCAPD3P42695 1498 aa35.47■■■■□ 3.27
COL9A1-205ENST00000447041 ATAD2BQ9ULI0 1458 aa35.42■■■■□ 3.26
COL9A1-205ENST00000447041 SMARCA2P51531 1590 aa35.33■■■■□ 3.25
COL9A1-205ENST00000447041 BAZ1AQ9NRL2 1556 aaPredicted RBP35.3■■■■□ 3.24
COL9A1-205ENST00000447041 HMGXB3Q12766 1538 aa35.27■■■■□ 3.24
COL9A1-205ENST00000447041 PEG3Q9GZU2 1588 aa35.12■■■■□ 3.21
COL9A1-205ENST00000447041 BAZ1BQ9UIG0 1483 aaKnown RBP35.09■■■■□ 3.21
COL9A1-205ENST00000447041 MROH2BQ7Z745 1585 aa35.08■■■■□ 3.21
COL9A1-205ENST00000447041 ERCC6Q03468 1493 aa34.97■■■■□ 3.19
COL9A1-205ENST00000447041 NESP48681 1621 aa34.91■■■■□ 3.18
COL9A1-205ENST00000447041 CUX2O14529 1486 aa34.83■■■■□ 3.17
COL9A1-205ENST00000447041 WIZO95785 1651 aa34.7■■■■□ 3.15
COL9A1-205ENST00000447041 LAMC3Q9Y6N6 1575 aa34.67■■■■□ 3.14
COL9A1-205ENST00000447041 THOC2Q8NI27 1593 aaKnown RBP34.55■■■■□ 3.12
COL9A1-205ENST00000447041 KIF21AQ7Z4S6 1674 aa34.51■■■■□ 3.12
COL9A1-205ENST00000447041 DNAJC5Q9H3Z4 198 aa34.5■■■■□ 3.11
COL9A1-205ENST00000447041 PDS5BQ9NTI5 1447 aa34.41■■■■□ 3.1
COL9A1-205ENST00000447041 RSF1Q96T23 1441 aaPredicted RBP34.39■■■■□ 3.1
COL9A1-205ENST00000447041 CADPSQ9ULU8 1353 aa34.39■■■■□ 3.1
COL9A1-205ENST00000447041 TOP2AP11388 1531 aaKnown RBP34.25■■■■□ 3.07
COL9A1-205ENST00000447041 MRC2Q9UBG0 1479 aa34.16■■■■□ 3.06
COL9A1-205ENST00000447041 WDR62O43379 1518 aa34.09■■■■□ 3.05
COL9A1-205ENST00000447041 CFTRP13569 1480 aa34.07■■■■□ 3.05
COL9A1-205ENST00000447041 CEP164Q9UPV0 1460 aa34.07■■■■□ 3.04
COL9A1-205ENST00000447041 FANCD2Q9BXW9 1451 aa34.04■■■■□ 3.04
COL9A1-205ENST00000447041 PRDM2Q13029 1718 aa33.84■■■■□ 3.01
COL9A1-205ENST00000447041 CCDC88BA6NC98 1476 aa33.83■■■■□ 3.01
COL9A1-205ENST00000447041 URB2Q14146 1524 aaKnown RBP33.78■■■■□ 3
COL9A1-205ENST00000447041 TOPBP1Q92547 1522 aa33.43■■■□□ 2.94
COL9A1-205ENST00000447041 IFT140Q96RY7 1462 aa33.35■■■□□ 2.93
COL9A1-205ENST00000447041 DNMBPQ6XZF7 1577 aa33.34■■■□□ 2.93
COL9A1-205ENST00000447041 ZNF608Q9ULD9 1512 aaPredicted RBP33.33■■■□□ 2.93
COL9A1-205ENST00000447041 ABCC8Q09428 1581 aa33.31■■■□□ 2.92
COL9A1-205ENST00000447041 EIF4G3O43432 1585 aaKnown RBP33.19■■■□□ 2.9
COL9A1-205ENST00000447041 OSCARQ8IYS5 282 aa33.19■■■□□ 2.9
COL9A1-205ENST00000447041 TARBP1Q13395 1621 aaKnown RBP33.14■■■□□ 2.9
COL9A1-205ENST00000447041 TRIM41Q8WV44 630 aa33.13■■■□□ 2.89
COL9A1-205ENST00000447041 POLA1P09884 1462 aaPredicted RBP33.12■■■□□ 2.89
COL9A1-205ENST00000447041 AQRO60306 1485 aaKnown RBP eCLIP33.01■■■□□ 2.88
COL9A1-205ENST00000447041 SUPT5HO00267 1087 aaKnown RBP33■■■□□ 2.87
COL9A1-205ENST00000447041 RAD54L2Q9Y4B4 1467 aa32.99■■■□□ 2.87
COL9A1-205ENST00000447041 CUX1P39880 1505 aa32.96■■■□□ 2.87
COL9A1-205ENST00000447041 FGD5Q6ZNL6 1462 aa32.94■■■□□ 2.86
COL9A1-205ENST00000447041 SOGA1O94964 1423 aa32.91■■■□□ 2.86
COL9A1-205ENST00000447041 CHD1O14646 1710 aa32.91■■■□□ 2.86
COL9A1-205ENST00000447041 RIMBP3CA6NJZ7 1639 aa32.88■■■□□ 2.85
COL9A1-205ENST00000447041 RIMBP3BA6NNM3 1639 aa32.88■■■□□ 2.85
COL9A1-205ENST00000447041 RIMBP3Q9UFD9 1639 aa32.88■■■□□ 2.85
COL9A1-205ENST00000447041 TDRD9Q8NDG6 1382 aaKnown RBP32.83■■■□□ 2.85
COL9A1-205ENST00000447041 WDR97A6NE52 1622 aa32.8■■■□□ 2.84
COL9A1-205ENST00000447041 ARHGEF11O15085 1522 aa32.77■■■□□ 2.84
COL9A1-205ENST00000447041 SNAPC4Q5SXM2 1469 aa32.73■■■□□ 2.83
COL9A1-205ENST00000447041 FBLN2P98095 1184 aa32.71■■■□□ 2.83
COL9A1-205ENST00000447041 GRIN2BQ13224 1484 aa32.62■■■□□ 2.81
COL9A1-205ENST00000447041 MAGI1Q96QZ7 1491 aaPredicted RBP32.61■■■□□ 2.81
COL9A1-205ENST00000447041 PBRM1Q86U86 1689 aa32.6■■■□□ 2.81
COL9A1-205ENST00000447041 ABCA10Q8WWZ4 1543 aa32.56■■■□□ 2.8
COL9A1-205ENST00000447041 ABCA5Q8WWZ7 1642 aa32.55■■■□□ 2.8
COL9A1-205ENST00000447041 GAPVD1Q14C86 1478 aa32.54■■■□□ 2.8
COL9A1-205ENST00000447041 BIVM-ERCC5R4GMW8 1640 aa32.51■■■□□ 2.79
COL9A1-205ENST00000447041 CLASP1Q7Z460 1538 aa32.51■■■□□ 2.79
COL9A1-205ENST00000447041 SYNJ2O15056 1496 aa32.5■■■□□ 2.79
COL9A1-205ENST00000447041 SYNJ1O43426 1573 aa32.49■■■□□ 2.79
COL9A1-205ENST00000447041 CHMP7Q8WUX9 453 aaPredicted RBP32.48■■■□□ 2.79
COL9A1-205ENST00000447041 ARAP1Q96P48 1450 aa32.48■■■□□ 2.79
COL9A1-205ENST00000447041 TOP2BQ02880 1626 aa32.48■■■□□ 2.79
COL9A1-205ENST00000447041 WRNQ14191 1432 aaPredicted RBP eCLIP32.44■■■□□ 2.78
COL9A1-205ENST00000447041 CYB5RLQ6IPT4 315 aa32.44■■■□□ 2.78
COL9A1-205ENST00000447041 ADAMTS12P58397 1594 aa32.28■■■□□ 2.76
COL9A1-205ENST00000447041 GRIN2AQ12879 1464 aa32.23■■■□□ 2.75
COL9A1-205ENST00000447041 ERICH3Q5RHP9 1530 aa32.16■■■□□ 2.74
COL9A1-205ENST00000447041 CEP170Q5SW79 1584 aa32.14■■■□□ 2.74
COL9A1-205ENST00000447041 FHAD1B1AJZ9 1412 aa32.12■■■□□ 2.73
COL9A1-205ENST00000447041 NUP160Q12769 1436 aa32.1■■■□□ 2.73
COL9A1-205ENST00000447041 ERCC6L2Q5T890 1561 aa32.04■■■□□ 2.72
COL9A1-205ENST00000447041 TRHP20396 242 aaPredicted RBP32.01■■■□□ 2.71
COL9A1-205ENST00000447041 SHROOM2Q13796 1616 aa31.97■■■□□ 2.71
COL9A1-205ENST00000447041 RUSC2Q8N2Y8 1516 aa31.84■■■□□ 2.69
COL9A1-205ENST00000447041 KIF27Q86VH2 1401 aa31.79■■■□□ 2.68
COL9A1-205ENST00000447041 CUL7Q14999 1698 aa31.76■■■□□ 2.67
COL9A1-205ENST00000447041 PRG4Q92954 1404 aaPredicted RBP31.75■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms