RNA–Protein interactions for RNA: ENST00000446764.5

GARNL3-209, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 4

Gene GARNL3, Length 523 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-209ENST00000446764 NISCHQ9Y2I1 1504 aa50.67■■■■■ 5.7
GARNL3-209ENST00000446764 CCDC180Q9P1Z9 1646 aa44.93■■■■■ 4.78
GARNL3-209ENST00000446764 ABCC9O60706 1549 aa44.18■■■■■ 4.66
GARNL3-209ENST00000446764 DCAF8L2P0C7V8 631 aa42.46■■■■■ 4.39
GARNL3-209ENST00000446764 RB1CC1Q8TDY2 1594 aa42.39■■■■■ 4.38
GARNL3-209ENST00000446764 NACADO15069 1562 aa42.35■■■■■ 4.37
GARNL3-209ENST00000446764 ZCCHC6Q5VYS8 1495 aaKnown RBP42.19■■■■■ 4.34
GARNL3-209ENST00000446764 MYO15BQ96JP2 1530 aa42.1■■■■■ 4.33
GARNL3-209ENST00000446764 DCAF1Q9Y4B6 1507 aa41.9■■■■■ 4.3
GARNL3-209ENST00000446764 PABPN1Q86U42 306 aaKnown RBP eCLIP41.35■■■■■ 4.21
GARNL3-209ENST00000446764 UNC13AQ9UPW8 1703 aa41.29■■■■■ 4.2
GARNL3-209ENST00000446764 BICRAQ9NZM4 1560 aa41.14■■■■■ 4.18
GARNL3-209ENST00000446764 SCRIBQ14160 1630 aa41.07■■■■■ 4.17
GARNL3-209ENST00000446764 DNAJC5BQ9UF47 199 aa40.69■■■■■ 4.1
GARNL3-209ENST00000446764 SHROOM4Q9ULL8 1493 aa40.69■■■■■ 4.1
GARNL3-209ENST00000446764 EIF4G1Q04637 1599 aaKnown RBP40.06■■■■■ 4
GARNL3-209ENST00000446764 CC2D2AQ9P2K1 1620 aa39.9■■■■□ 3.98
GARNL3-209ENST00000446764 CECR2Q9BXF3 1484 aa39.69■■■■□ 3.94
GARNL3-209ENST00000446764 SMARCA4P51532 1647 aa39.27■■■■□ 3.88
GARNL3-209ENST00000446764 BAZ1AQ9NRL2 1556 aaPredicted RBP39.25■■■■□ 3.87
GARNL3-209ENST00000446764 ATAD2BQ9ULI0 1458 aa39.16■■■■□ 3.86
GARNL3-209ENST00000446764 NCAPD3P42695 1498 aa39.15■■■■□ 3.86
GARNL3-209ENST00000446764 MROH2BQ7Z745 1585 aa39.07■■■■□ 3.84
GARNL3-209ENST00000446764 SMARCA2P51531 1590 aa39.04■■■■□ 3.84
GARNL3-209ENST00000446764 PEG3Q9GZU2 1588 aa38.9■■■■□ 3.82
GARNL3-209ENST00000446764 HMGXB3Q12766 1538 aa38.88■■■■□ 3.81
GARNL3-209ENST00000446764 BAZ1BQ9UIG0 1483 aaKnown RBP38.79■■■■□ 3.8
GARNL3-209ENST00000446764 RSF1Q96T23 1441 aaPredicted RBP38.63■■■■□ 3.78
GARNL3-209ENST00000446764 WIZO95785 1651 aa38.58■■■■□ 3.77
GARNL3-209ENST00000446764 NESP48681 1621 aa38.21■■■■□ 3.71
GARNL3-209ENST00000446764 TOP2AP11388 1531 aaKnown RBP38.19■■■■□ 3.7
GARNL3-209ENST00000446764 ERCC6Q03468 1493 aa38.06■■■■□ 3.68
GARNL3-209ENST00000446764 LAMC3Q9Y6N6 1575 aa38.04■■■■□ 3.68
GARNL3-209ENST00000446764 CADPSQ9ULU8 1353 aa38.03■■■■□ 3.68
GARNL3-209ENST00000446764 PDS5BQ9NTI5 1447 aa37.86■■■■□ 3.65
GARNL3-209ENST00000446764 CCDC88BA6NC98 1476 aa37.8■■■■□ 3.64
GARNL3-209ENST00000446764 CFTRP13569 1480 aa37.76■■■■□ 3.63
GARNL3-209ENST00000446764 CUX2O14529 1486 aa37.67■■■■□ 3.62
GARNL3-209ENST00000446764 SUPT5HO00267 1087 aaKnown RBP37.66■■■■□ 3.62
GARNL3-209ENST00000446764 KIF21AQ7Z4S6 1674 aa37.61■■■■□ 3.61
GARNL3-209ENST00000446764 THOC2Q8NI27 1593 aaKnown RBP37.56■■■■□ 3.6
GARNL3-209ENST00000446764 FANCD2Q9BXW9 1451 aa37.55■■■■□ 3.6
GARNL3-209ENST00000446764 CEP164Q9UPV0 1460 aa37.49■■■■□ 3.59
GARNL3-209ENST00000446764 MRC2Q9UBG0 1479 aa37.45■■■■□ 3.59
GARNL3-209ENST00000446764 WDR62O43379 1518 aa37.31■■■■□ 3.56
GARNL3-209ENST00000446764 PRDM2Q13029 1718 aa37.22■■■■□ 3.55
GARNL3-209ENST00000446764 URB2Q14146 1524 aaKnown RBP37.18■■■■□ 3.54
GARNL3-209ENST00000446764 TOPBP1Q92547 1522 aa36.93■■■■□ 3.5
GARNL3-209ENST00000446764 ABCC8Q09428 1581 aa36.91■■■■□ 3.5
GARNL3-209ENST00000446764 DNMBPQ6XZF7 1577 aa36.84■■■■□ 3.49
GARNL3-209ENST00000446764 IFT140Q96RY7 1462 aa36.72■■■■□ 3.47
GARNL3-209ENST00000446764 DNAJC5Q9H3Z4 198 aa36.65■■■■□ 3.46
GARNL3-209ENST00000446764 CUX1P39880 1505 aa36.64■■■■□ 3.46
GARNL3-209ENST00000446764 POLA1P09884 1462 aaPredicted RBP36.62■■■■□ 3.45
GARNL3-209ENST00000446764 ZNF608Q9ULD9 1512 aaPredicted RBP36.58■■■■□ 3.45
GARNL3-209ENST00000446764 FGD5Q6ZNL6 1462 aa36.53■■■■□ 3.44
GARNL3-209ENST00000446764 SOGA1O94964 1423 aa36.51■■■■□ 3.44
GARNL3-209ENST00000446764 RAD54L2Q9Y4B4 1467 aa36.5■■■■□ 3.43
GARNL3-209ENST00000446764 TARBP1Q13395 1621 aaKnown RBP36.48■■■■□ 3.43
GARNL3-209ENST00000446764 WRNQ14191 1432 aaPredicted RBP eCLIP36.41■■■■□ 3.42
GARNL3-209ENST00000446764 AQRO60306 1485 aaKnown RBP eCLIP36.39■■■■□ 3.42
GARNL3-209ENST00000446764 EIF4G3O43432 1585 aaKnown RBP36.34■■■■□ 3.41
GARNL3-209ENST00000446764 TDRD9Q8NDG6 1382 aaKnown RBP36.33■■■■□ 3.41
GARNL3-209ENST00000446764 SYNJ1O43426 1573 aa36.27■■■■□ 3.4
GARNL3-209ENST00000446764 TOP2BQ02880 1626 aa36.26■■■■□ 3.39
GARNL3-209ENST00000446764 BIVM-ERCC5R4GMW8 1640 aa36.22■■■■□ 3.39
GARNL3-209ENST00000446764 OSCARQ8IYS5 282 aa36.17■■■■□ 3.38
GARNL3-209ENST00000446764 ABCA10Q8WWZ4 1543 aa36.17■■■■□ 3.38
GARNL3-209ENST00000446764 WDR97A6NE52 1622 aa36.16■■■■□ 3.38
GARNL3-209ENST00000446764 GRIN2BQ13224 1484 aa36.06■■■■□ 3.36
GARNL3-209ENST00000446764 GAPVD1Q14C86 1478 aa36.06■■■■□ 3.36
GARNL3-209ENST00000446764 SNAPC4Q5SXM2 1469 aa36.02■■■■□ 3.36
GARNL3-209ENST00000446764 FBLN2P98095 1184 aa35.98■■■■□ 3.35
GARNL3-209ENST00000446764 ABCA5Q8WWZ7 1642 aa35.97■■■■□ 3.35
GARNL3-209ENST00000446764 MAGI1Q96QZ7 1491 aaPredicted RBP35.94■■■■□ 3.34
GARNL3-209ENST00000446764 CHMP7Q8WUX9 453 aaPredicted RBP35.87■■■■□ 3.33
GARNL3-209ENST00000446764 PBRM1Q86U86 1689 aa35.84■■■■□ 3.33
GARNL3-209ENST00000446764 CHD1O14646 1710 aa35.83■■■■□ 3.33
GARNL3-209ENST00000446764 SYNJ2O15056 1496 aa35.82■■■■□ 3.32
GARNL3-209ENST00000446764 ERICH3Q5RHP9 1530 aa35.71■■■■□ 3.31
GARNL3-209ENST00000446764 FHAD1B1AJZ9 1412 aa35.66■■■■□ 3.3
GARNL3-209ENST00000446764 KIF27Q86VH2 1401 aa35.66■■■■□ 3.3
GARNL3-209ENST00000446764 ADAMTS12P58397 1594 aa35.64■■■■□ 3.3
GARNL3-209ENST00000446764 GRIN2AQ12879 1464 aa35.59■■■■□ 3.29
GARNL3-209ENST00000446764 IGF1RP08069 1367 aa35.56■■■■□ 3.28
GARNL3-209ENST00000446764 TRIM41Q8WV44 630 aa35.56■■■■□ 3.28
GARNL3-209ENST00000446764 CLASP1Q7Z460 1538 aa35.54■■■■□ 3.28
GARNL3-209ENST00000446764 ARHGEF11O15085 1522 aa35.52■■■■□ 3.28
GARNL3-209ENST00000446764 RIMBP3CA6NJZ7 1639 aa35.48■■■■□ 3.27
GARNL3-209ENST00000446764 RIMBP3BA6NNM3 1639 aa35.48■■■■□ 3.27
GARNL3-209ENST00000446764 RIMBP3Q9UFD9 1639 aa35.48■■■■□ 3.27
GARNL3-209ENST00000446764 NUP160Q12769 1436 aa35.45■■■■□ 3.27
GARNL3-209ENST00000446764 CEP170Q5SW79 1584 aa35.38■■■■□ 3.25
GARNL3-209ENST00000446764 RUSC2Q8N2Y8 1516 aa35.34■■■■□ 3.25
GARNL3-209ENST00000446764 CARMIL1Q5VZK9 1371 aa35.33■■■■□ 3.25
GARNL3-209ENST00000446764 CUL7Q14999 1698 aa35.3■■■■□ 3.24
GARNL3-209ENST00000446764 CYB5RLQ6IPT4 315 aa35.28■■■■□ 3.24
GARNL3-209ENST00000446764 ARAP1Q96P48 1450 aa35.25■■■■□ 3.23
GARNL3-209ENST00000446764 JPH4Q96JJ6 628 aa35.14■■■■□ 3.22
GARNL3-209ENST00000446764 CHIC1Q5VXU3 224 aa35.12■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms