RNA–Protein interactions for RNA: ENST00000446553.2

CDCA3-203, Transcript of cell division cycle associated 3, humanhuman

TSL 2

Gene CDCA3, Length 646 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-203ENST00000446553 NISCHQ9Y2I1 1504 aa28.02■■■□□ 2.08
CDCA3-203ENST00000446553 CCDC180Q9P1Z9 1646 aa25.09■■□□□ 1.61
CDCA3-203ENST00000446553 ABCC9O60706 1549 aa24.72■■□□□ 1.55
CDCA3-203ENST00000446553 RB1CC1Q8TDY2 1594 aa23.74■■□□□ 1.39
CDCA3-203ENST00000446553 NACADO15069 1562 aa23.67■■□□□ 1.38
CDCA3-203ENST00000446553 MYO15BQ96JP2 1530 aa23.5■■□□□ 1.35
CDCA3-203ENST00000446553 DCAF8L2P0C7V8 631 aa23.38■■□□□ 1.33
CDCA3-203ENST00000446553 ZCCHC6Q5VYS8 1495 aaKnown RBP23.28■■□□□ 1.32
CDCA3-203ENST00000446553 DCAF1Q9Y4B6 1507 aa23.26■■□□□ 1.31
CDCA3-203ENST00000446553 UNC13AQ9UPW8 1703 aa23.16■■□□□ 1.3
CDCA3-203ENST00000446553 PABPN1Q86U42 306 aaKnown RBP eCLIP23.02■■□□□ 1.28
CDCA3-203ENST00000446553 BICRAQ9NZM4 1560 aa23.01■■□□□ 1.27
CDCA3-203ENST00000446553 DNAJC5BQ9UF47 199 aa22.99■■□□□ 1.27
CDCA3-203ENST00000446553 SHROOM4Q9ULL8 1493 aa22.88■■□□□ 1.25
CDCA3-203ENST00000446553 SCRIBQ14160 1630 aa22.74■■□□□ 1.23
CDCA3-203ENST00000446553 EIF4G1Q04637 1599 aaKnown RBP22.43■■□□□ 1.18
CDCA3-203ENST00000446553 CC2D2AQ9P2K1 1620 aa22.39■■□□□ 1.18
CDCA3-203ENST00000446553 CECR2Q9BXF3 1484 aa22.3■■□□□ 1.16
CDCA3-203ENST00000446553 NCAPD3P42695 1498 aa21.85■■□□□ 1.09
CDCA3-203ENST00000446553 SMARCA4P51532 1647 aa21.79■■□□□ 1.08
CDCA3-203ENST00000446553 ATAD2BQ9ULI0 1458 aa21.77■■□□□ 1.07
CDCA3-203ENST00000446553 SMARCA2P51531 1590 aa21.75■■□□□ 1.07
CDCA3-203ENST00000446553 BAZ1AQ9NRL2 1556 aaPredicted RBP21.75■■□□□ 1.07
CDCA3-203ENST00000446553 HMGXB3Q12766 1538 aa21.7■■□□□ 1.07
CDCA3-203ENST00000446553 PEG3Q9GZU2 1588 aa21.65■■□□□ 1.06
CDCA3-203ENST00000446553 BAZ1BQ9UIG0 1483 aaKnown RBP21.55■■□□□ 1.04
CDCA3-203ENST00000446553 MROH2BQ7Z745 1585 aa21.54■■□□□ 1.04
CDCA3-203ENST00000446553 ERCC6Q03468 1493 aa21.36■■□□□ 1.01
CDCA3-203ENST00000446553 CUX2O14529 1486 aa21.34■■□□□ 1.01
CDCA3-203ENST00000446553 LAMC3Q9Y6N6 1575 aa21.31■■□□□ 1
CDCA3-203ENST00000446553 NESP48681 1621 aa21.3■■□□□ 1
CDCA3-203ENST00000446553 WIZO95785 1651 aa21.27■■□□□ 1
CDCA3-203ENST00000446553 RSF1Q96T23 1441 aaPredicted RBP21.21■□□□□ 0.99
CDCA3-203ENST00000446553 CADPSQ9ULU8 1353 aa21.17■□□□□ 0.98
CDCA3-203ENST00000446553 PDS5BQ9NTI5 1447 aa21.17■□□□□ 0.98
CDCA3-203ENST00000446553 THOC2Q8NI27 1593 aaKnown RBP21.1■□□□□ 0.97
CDCA3-203ENST00000446553 TOP2AP11388 1531 aaKnown RBP21.09■□□□□ 0.97
CDCA3-203ENST00000446553 KIF21AQ7Z4S6 1674 aa21.06■□□□□ 0.96
CDCA3-203ENST00000446553 DNAJC5Q9H3Z4 198 aa21.04■□□□□ 0.96
CDCA3-203ENST00000446553 CFTRP13569 1480 aa20.98■□□□□ 0.95
CDCA3-203ENST00000446553 MRC2Q9UBG0 1479 aa20.94■□□□□ 0.94
CDCA3-203ENST00000446553 WDR62O43379 1518 aa20.9■□□□□ 0.94
CDCA3-203ENST00000446553 CEP164Q9UPV0 1460 aa20.89■□□□□ 0.94
CDCA3-203ENST00000446553 FANCD2Q9BXW9 1451 aa20.88■□□□□ 0.93
CDCA3-203ENST00000446553 CCDC88BA6NC98 1476 aa20.81■□□□□ 0.92
CDCA3-203ENST00000446553 PRDM2Q13029 1718 aa20.78■□□□□ 0.92
CDCA3-203ENST00000446553 URB2Q14146 1524 aaKnown RBP20.69■□□□□ 0.9
CDCA3-203ENST00000446553 ABCC8Q09428 1581 aa20.58■□□□□ 0.88
CDCA3-203ENST00000446553 TOPBP1Q92547 1522 aa20.53■□□□□ 0.88
CDCA3-203ENST00000446553 IFT140Q96RY7 1462 aa20.5■□□□□ 0.87
CDCA3-203ENST00000446553 DNMBPQ6XZF7 1577 aa20.49■□□□□ 0.87
CDCA3-203ENST00000446553 ZNF608Q9ULD9 1512 aaPredicted RBP20.37■□□□□ 0.85
CDCA3-203ENST00000446553 OSCARQ8IYS5 282 aa20.36■□□□□ 0.85
CDCA3-203ENST00000446553 TARBP1Q13395 1621 aaKnown RBP20.33■□□□□ 0.84
CDCA3-203ENST00000446553 POLA1P09884 1462 aaPredicted RBP20.32■□□□□ 0.84
CDCA3-203ENST00000446553 SUPT5HO00267 1087 aaKnown RBP20.31■□□□□ 0.84
CDCA3-203ENST00000446553 EIF4G3O43432 1585 aaKnown RBP20.29■□□□□ 0.84
CDCA3-203ENST00000446553 WDR97A6NE52 1622 aa20.24■□□□□ 0.83
CDCA3-203ENST00000446553 CUX1P39880 1505 aa20.23■□□□□ 0.83
CDCA3-203ENST00000446553 SOGA1O94964 1423 aa20.23■□□□□ 0.83
CDCA3-203ENST00000446553 AQRO60306 1485 aaKnown RBP eCLIP20.21■□□□□ 0.833e-7■■■■■ 33.1
CDCA3-203ENST00000446553 FGD5Q6ZNL6 1462 aa20.21■□□□□ 0.83
CDCA3-203ENST00000446553 RAD54L2Q9Y4B4 1467 aa20.19■□□□□ 0.82
CDCA3-203ENST00000446553 TDRD9Q8NDG6 1382 aaKnown RBP20.12■□□□□ 0.81
CDCA3-203ENST00000446553 CHD1O14646 1710 aa20.08■□□□□ 0.81
CDCA3-203ENST00000446553 GRIN2BQ13224 1484 aa20.06■□□□□ 0.8
CDCA3-203ENST00000446553 MAGI1Q96QZ7 1491 aaPredicted RBP20.06■□□□□ 0.8
CDCA3-203ENST00000446553 TRIM41Q8WV44 630 aa20.06■□□□□ 0.8
CDCA3-203ENST00000446553 ABCA10Q8WWZ4 1543 aa20.06■□□□□ 0.8
CDCA3-203ENST00000446553 RIMBP3CA6NJZ7 1639 aa20.03■□□□□ 0.8
CDCA3-203ENST00000446553 RIMBP3BA6NNM3 1639 aa20.03■□□□□ 0.8
CDCA3-203ENST00000446553 RIMBP3Q9UFD9 1639 aa20.03■□□□□ 0.8
CDCA3-203ENST00000446553 SNAPC4Q5SXM2 1469 aa20.03■□□□□ 0.8
CDCA3-203ENST00000446553 ARHGEF11O15085 1522 aa20.02■□□□□ 0.79
CDCA3-203ENST00000446553 TOP2BQ02880 1626 aa20.01■□□□□ 0.79
CDCA3-203ENST00000446553 BIVM-ERCC5R4GMW8 1640 aa20.01■□□□□ 0.79
CDCA3-203ENST00000446553 WRNQ14191 1432 aaPredicted RBP eCLIP20.01■□□□□ 0.79
CDCA3-203ENST00000446553 GAPVD1Q14C86 1478 aa20■□□□□ 0.79
CDCA3-203ENST00000446553 FBLN2P98095 1184 aa19.98■□□□□ 0.79
CDCA3-203ENST00000446553 ABCA5Q8WWZ7 1642 aa19.98■□□□□ 0.79
CDCA3-203ENST00000446553 SYNJ2O15056 1496 aa19.97■□□□□ 0.79
CDCA3-203ENST00000446553 PBRM1Q86U86 1689 aa19.95■□□□□ 0.78
CDCA3-203ENST00000446553 CHMP7Q8WUX9 453 aaPredicted RBP19.95■□□□□ 0.78
CDCA3-203ENST00000446553 SYNJ1O43426 1573 aa19.93■□□□□ 0.78
CDCA3-203ENST00000446553 CLASP1Q7Z460 1538 aa19.92■□□□□ 0.78
CDCA3-203ENST00000446553 ARAP1Q96P48 1450 aa19.82■□□□□ 0.76
CDCA3-203ENST00000446553 ERICH3Q5RHP9 1530 aa19.81■□□□□ 0.76
CDCA3-203ENST00000446553 ADAMTS12P58397 1594 aa19.8■□□□□ 0.76
CDCA3-203ENST00000446553 CYB5RLQ6IPT4 315 aa19.8■□□□□ 0.76
CDCA3-203ENST00000446553 GRIN2AQ12879 1464 aa19.79■□□□□ 0.76
CDCA3-203ENST00000446553 FHAD1B1AJZ9 1412 aa19.78■□□□□ 0.76
CDCA3-203ENST00000446553 NUP160Q12769 1436 aa19.75■□□□□ 0.75
CDCA3-203ENST00000446553 CEP170Q5SW79 1584 aa19.68■□□□□ 0.74
CDCA3-203ENST00000446553 SHROOM2Q13796 1616 aa19.63■□□□□ 0.73
CDCA3-203ENST00000446553 KIF27Q86VH2 1401 aa19.62■□□□□ 0.73
CDCA3-203ENST00000446553 IGF1RP08069 1367 aa19.58■□□□□ 0.73
CDCA3-203ENST00000446553 CUL7Q14999 1698 aa19.56■□□□□ 0.72
CDCA3-203ENST00000446553 ERCC6L2Q5T890 1561 aa19.53■□□□□ 0.72
CDCA3-203ENST00000446553 JPH4Q96JJ6 628 aa19.51■□□□□ 0.71
CDCA3-203ENST00000446553 RUSC2Q8N2Y8 1516 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms