RNA–Protein interactions for RNA: ENST00000445623.1

TIMP1-204, Transcript of TIMP metallopeptidase inhibitor 1, humanhuman

TSL 2

Gene TIMP1, Length 595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1-204ENST00000445623 NISCHQ9Y2I1 1504 aa31.14■■■□□ 2.58
TIMP1-204ENST00000445623 CCDC180Q9P1Z9 1646 aa27.57■■■□□ 2
TIMP1-204ENST00000445623 ABCC9O60706 1549 aa26.49■■□□□ 1.83
TIMP1-204ENST00000445623 ZCCHC6Q5VYS8 1495 aaKnown RBP26.04■■□□□ 1.76
TIMP1-204ENST00000445623 DCAF8L2P0C7V8 631 aa25.84■■□□□ 1.73
TIMP1-204ENST00000445623 DCAF1Q9Y4B6 1507 aa25.82■■□□□ 1.72
TIMP1-204ENST00000445623 NACADO15069 1562 aa25.8■■□□□ 1.72
TIMP1-204ENST00000445623 MYO15BQ96JP2 1530 aa25.78■■□□□ 1.72
TIMP1-204ENST00000445623 RB1CC1Q8TDY2 1594 aa25.73■■□□□ 1.71
TIMP1-204ENST00000445623 SCRIBQ14160 1630 aa25.15■■□□□ 1.62
TIMP1-204ENST00000445623 UNC13AQ9UPW8 1703 aa25.13■■□□□ 1.61
TIMP1-204ENST00000445623 BICRAQ9NZM4 1560 aa24.86■■□□□ 1.57
TIMP1-204ENST00000445623 SHROOM4Q9ULL8 1493 aa24.83■■□□□ 1.56
TIMP1-204ENST00000445623 PABPN1Q86U42 306 aaKnown RBP eCLIP24.79■■□□□ 1.56
TIMP1-204ENST00000445623 EIF4G1Q04637 1599 aaKnown RBP24.21■■□□□ 1.47
TIMP1-204ENST00000445623 CECR2Q9BXF3 1484 aa24.17■■□□□ 1.46
TIMP1-204ENST00000445623 BAZ1AQ9NRL2 1556 aaPredicted RBP24.15■■□□□ 1.46
TIMP1-204ENST00000445623 SMARCA4P51532 1647 aa24.1■■□□□ 1.45
TIMP1-204ENST00000445623 CC2D2AQ9P2K1 1620 aa24.01■■□□□ 1.43
TIMP1-204ENST00000445623 MROH2BQ7Z745 1585 aa23.99■■□□□ 1.43
TIMP1-204ENST00000445623 SMARCA2P51531 1590 aa23.88■■□□□ 1.41
TIMP1-204ENST00000445623 RSF1Q96T23 1441 aaPredicted RBP23.86■■□□□ 1.41
TIMP1-204ENST00000445623 PEG3Q9GZU2 1588 aa23.85■■□□□ 1.41
TIMP1-204ENST00000445623 ATAD2BQ9ULI0 1458 aa23.83■■□□□ 1.41
TIMP1-204ENST00000445623 DNAJC5BQ9UF47 199 aa23.83■■□□□ 1.41
TIMP1-204ENST00000445623 WIZO95785 1651 aa23.76■■□□□ 1.39
TIMP1-204ENST00000445623 NCAPD3P42695 1498 aa23.76■■□□□ 1.39
TIMP1-204ENST00000445623 HMGXB3Q12766 1538 aa23.73■■□□□ 1.39
TIMP1-204ENST00000445623 BAZ1BQ9UIG0 1483 aaKnown RBP23.7■■□□□ 1.38
TIMP1-204ENST00000445623 SUPT5HO00267 1087 aaKnown RBP23.58■■□□□ 1.37
TIMP1-204ENST00000445623 TOP2AP11388 1531 aaKnown RBP23.58■■□□□ 1.36
TIMP1-204ENST00000445623 CCDC88BA6NC98 1476 aa23.25■■□□□ 1.31
TIMP1-204ENST00000445623 LAMC3Q9Y6N6 1575 aa23.11■■□□□ 1.29
TIMP1-204ENST00000445623 CADPSQ9ULU8 1353 aa23.1■■□□□ 1.29
TIMP1-204ENST00000445623 CFTRP13569 1480 aa23.05■■□□□ 1.28
TIMP1-204ENST00000445623 NESP48681 1621 aa23.03■■□□□ 1.28
TIMP1-204ENST00000445623 PRDM2Q13029 1718 aa22.99■■□□□ 1.27
TIMP1-204ENST00000445623 PDS5BQ9NTI5 1447 aa22.94■■□□□ 1.26
TIMP1-204ENST00000445623 ERCC6Q03468 1493 aa22.86■■□□□ 1.25
TIMP1-204ENST00000445623 FANCD2Q9BXW9 1451 aa22.84■■□□□ 1.25
TIMP1-204ENST00000445623 KIF21AQ7Z4S6 1674 aa22.82■■□□□ 1.24
TIMP1-204ENST00000445623 CEP164Q9UPV0 1460 aa22.8■■□□□ 1.24
TIMP1-204ENST00000445623 MRC2Q9UBG0 1479 aa22.66■■□□□ 1.22
TIMP1-204ENST00000445623 THOC2Q8NI27 1593 aaKnown RBP22.63■■□□□ 1.21
TIMP1-204ENST00000445623 ABCC8Q09428 1581 aa22.59■■□□□ 1.21
TIMP1-204ENST00000445623 WDR62O43379 1518 aa22.57■■□□□ 1.2
TIMP1-204ENST00000445623 DNMBPQ6XZF7 1577 aa22.56■■□□□ 1.2
TIMP1-204ENST00000445623 URB2Q14146 1524 aaKnown RBP22.55■■□□□ 1.2
TIMP1-204ENST00000445623 WRNQ14191 1432 aaPredicted RBP eCLIP22.53■■□□□ 1.2
TIMP1-204ENST00000445623 TOPBP1Q92547 1522 aa22.52■■□□□ 1.19
TIMP1-204ENST00000445623 CUX1P39880 1505 aa22.48■■□□□ 1.19
TIMP1-204ENST00000445623 CUX2O14529 1486 aa22.47■■□□□ 1.19
TIMP1-204ENST00000445623 BIVM-ERCC5R4GMW8 1640 aa22.45■■□□□ 1.18
TIMP1-204ENST00000445623 TOP2BQ02880 1626 aa22.44■■□□□ 1.18
TIMP1-204ENST00000445623 SYNJ1O43426 1573 aa22.42■■□□□ 1.18
TIMP1-204ENST00000445623 FGD5Q6ZNL6 1462 aa22.36■■□□□ 1.17
TIMP1-204ENST00000445623 POLA1P09884 1462 aaPredicted RBP22.34■■□□□ 1.17
TIMP1-204ENST00000445623 IFT140Q96RY7 1462 aa22.3■■□□□ 1.16
TIMP1-204ENST00000445623 TRIM41Q8WV44 630 aa22.29■■□□□ 1.16
TIMP1-204ENST00000445623 SOGA1O94964 1423 aa22.27■■□□□ 1.16
TIMP1-204ENST00000445623 TARBP1Q13395 1621 aaKnown RBP22.24■■□□□ 1.15
TIMP1-204ENST00000445623 CHIC1Q5VXU3 224 aa22.23■■□□□ 1.15
TIMP1-204ENST00000445623 RAD54L2Q9Y4B4 1467 aa22.22■■□□□ 1.15
TIMP1-204ENST00000445623 WDR97A6NE52 1622 aa22.18■■□□□ 1.14
TIMP1-204ENST00000445623 ABCA10Q8WWZ4 1543 aa22.18■■□□□ 1.14
TIMP1-204ENST00000445623 ZNF608Q9ULD9 1512 aaPredicted RBP22.1■■□□□ 1.13
TIMP1-204ENST00000445623 EIF4G3O43432 1585 aaKnown RBP22.09■■□□□ 1.13
TIMP1-204ENST00000445623 TDRD9Q8NDG6 1382 aaKnown RBP22.06■■□□□ 1.12
TIMP1-204ENST00000445623 ABCA5Q8WWZ7 1642 aa22.06■■□□□ 1.12
TIMP1-204ENST00000445623 KIF27Q86VH2 1401 aa22.05■■□□□ 1.12
TIMP1-204ENST00000445623 AQRO60306 1485 aaKnown RBP eCLIP22.03■■□□□ 1.12
TIMP1-204ENST00000445623 GAPVD1Q14C86 1478 aa22.03■■□□□ 1.12
TIMP1-204ENST00000445623 PBRM1Q86U86 1689 aa21.99■■□□□ 1.11
TIMP1-204ENST00000445623 GRIN2BQ13224 1484 aa21.98■■□□□ 1.11
TIMP1-204ENST00000445623 ERICH3Q5RHP9 1530 aa21.94■■□□□ 1.1
TIMP1-204ENST00000445623 EEA1Q15075 1411 aa21.93■■□□□ 1.1
TIMP1-204ENST00000445623 MAGI1Q96QZ7 1491 aaPredicted RBP21.9■■□□□ 1.1
TIMP1-204ENST00000445623 RUSC2Q8N2Y8 1516 aa21.88■■□□□ 1.09
TIMP1-204ENST00000445623 SNAPC4Q5SXM2 1469 aa21.88■■□□□ 1.09
TIMP1-204ENST00000445623 CUL7Q14999 1698 aa21.85■■□□□ 1.09
TIMP1-204ENST00000445623 IGF1RP08069 1367 aa21.84■■□□□ 1.09
TIMP1-204ENST00000445623 ADAMTS12P58397 1594 aa21.82■■□□□ 1.08
TIMP1-204ENST00000445623 FHAD1B1AJZ9 1412 aa21.8■■□□□ 1.08
TIMP1-204ENST00000445623 SYNJ2O15056 1496 aa21.78■■□□□ 1.08
TIMP1-204ENST00000445623 FAM9AQ8IZU1 332 aaPredicted RBP21.77■■□□□ 1.08
TIMP1-204ENST00000445623 CSRNP3Q8WYN3 585 aa21.77■■□□□ 1.08
TIMP1-204ENST00000445623 CARMIL1Q5VZK9 1371 aa21.75■■□□□ 1.07
TIMP1-204ENST00000445623 CHMP7Q8WUX9 453 aaPredicted RBP21.74■■□□□ 1.07
TIMP1-204ENST00000445623 CHD1O14646 1710 aa21.74■■□□□ 1.07
TIMP1-204ENST00000445623 FBLN2P98095 1184 aa21.72■■□□□ 1.07
TIMP1-204ENST00000445623 GRIN2AQ12879 1464 aa21.69■■□□□ 1.06
TIMP1-204ENST00000445623 PRXQ9BXM0 1461 aa21.69■■□□□ 1.06
TIMP1-204ENST00000445623 RAPGEF2Q9Y4G8 1499 aa21.69■■□□□ 1.06
TIMP1-204ENST00000445623 KIF21BO75037 1637 aa21.65■■□□□ 1.06
TIMP1-204ENST00000445623 OSCARQ8IYS5 282 aa21.58■■□□□ 1.05
TIMP1-204ENST00000445623 NUP160Q12769 1436 aa21.56■■□□□ 1.04
TIMP1-204ENST00000445623 GOLGA3Q08378 1498 aa21.56■■□□□ 1.04
TIMP1-204ENST00000445623 CEP170Q5SW79 1584 aa21.55■■□□□ 1.04
TIMP1-204ENST00000445623 CTTNBP2Q8WZ74 1663 aa21.5■■□□□ 1.03
TIMP1-204ENST00000445623 CLASP1Q7Z460 1538 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms