RNA–Protein interactions for RNA: ENST00000444814.2

LTBR-204, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 1,553 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-204ENST00000444814 NISCHQ9Y2I1 1504 aa29.35■■■□□ 2.29
LTBR-204ENST00000444814 AEBP2Q6ZN18 517 aaPredicted RBP26.31■■□□□ 1.8
LTBR-204ENST00000444814 CCDC180Q9P1Z9 1646 aa26.1■■□□□ 1.77
LTBR-204ENST00000444814 ABCC9O60706 1549 aa25.42■■□□□ 1.66
LTBR-204ENST00000444814 RB1CC1Q8TDY2 1594 aa24.58■■□□□ 1.53
LTBR-204ENST00000444814 CHIC1Q5VXU3 224 aa24.58■■□□□ 1.52
LTBR-204ENST00000444814 DCAF8L2P0C7V8 631 aa24.57■■□□□ 1.52
LTBR-204ENST00000444814 NACADO15069 1562 aa24.57■■□□□ 1.52
LTBR-204ENST00000444814 MYO15BQ96JP2 1530 aa24.46■■□□□ 1.51
LTBR-204ENST00000444814 ZCCHC6Q5VYS8 1495 aaKnown RBP24.45■■□□□ 1.5
LTBR-204ENST00000444814 DCAF1Q9Y4B6 1507 aa24.35■■□□□ 1.49
LTBR-204ENST00000444814 UNC13AQ9UPW8 1703 aa23.8■■□□□ 1.4
LTBR-204ENST00000444814 PABPN1Q86U42 306 aaKnown RBP eCLIP23.75■■□□□ 1.39
LTBR-204ENST00000444814 SCRIBQ14160 1630 aa23.74■■□□□ 1.39
LTBR-204ENST00000444814 SHROOM4Q9ULL8 1493 aa23.67■■□□□ 1.38
LTBR-204ENST00000444814 BICRAQ9NZM4 1560 aa23.65■■□□□ 1.38
LTBR-204ENST00000444814 DNAJC5BQ9UF47 199 aa23.15■■□□□ 1.3
LTBR-204ENST00000444814 EIF4G1Q04637 1599 aaKnown RBP23.12■■□□□ 1.29
LTBR-204ENST00000444814 CC2D2AQ9P2K1 1620 aa22.99■■□□□ 1.27
LTBR-204ENST00000444814 CECR2Q9BXF3 1484 aa22.89■■□□□ 1.25
LTBR-204ENST00000444814 BAZ1AQ9NRL2 1556 aaPredicted RBP22.81■■□□□ 1.24
LTBR-204ENST00000444814 SMARCA4P51532 1647 aa22.74■■□□□ 1.23
LTBR-204ENST00000444814 SMARCA2P51531 1590 aa22.69■■□□□ 1.22
LTBR-204ENST00000444814 NCAPD3P42695 1498 aa22.64■■□□□ 1.21
LTBR-204ENST00000444814 ATAD2BQ9ULI0 1458 aa22.62■■□□□ 1.21
LTBR-204ENST00000444814 MROH2BQ7Z745 1585 aa22.55■■□□□ 1.2
LTBR-204ENST00000444814 HMGXB3Q12766 1538 aa22.54■■□□□ 1.2
LTBR-204ENST00000444814 PEG3Q9GZU2 1588 aa22.54■■□□□ 1.2
LTBR-204ENST00000444814 BAZ1BQ9UIG0 1483 aaKnown RBP22.5■■□□□ 1.19
LTBR-204ENST00000444814 SENP3Q9H4L4 574 aaPredicted RBP22.39■■□□□ 1.18
LTBR-204ENST00000444814 RSF1Q96T23 1441 aaPredicted RBP22.36■■□□□ 1.17
LTBR-204ENST00000444814 WIZO95785 1651 aa22.29■■□□□ 1.16
LTBR-204ENST00000444814 TOP2AP11388 1531 aaKnown RBP22.17■■□□□ 1.14
LTBR-204ENST00000444814 PHF23Q9BUL5 403 aaPredicted RBP22.1■■□□□ 1.13
LTBR-204ENST00000444814 LAMC3Q9Y6N6 1575 aa22.05■■□□□ 1.12
LTBR-204ENST00000444814 ERCC6Q03468 1493 aa22.04■■□□□ 1.12
LTBR-204ENST00000444814 CADPSQ9ULU8 1353 aa22■■□□□ 1.11
LTBR-204ENST00000444814 PDS5BQ9NTI5 1447 aa21.97■■□□□ 1.11
LTBR-204ENST00000444814 NESP48681 1621 aa21.94■■□□□ 1.1
LTBR-204ENST00000444814 SUPT5HO00267 1087 aaKnown RBP21.88■■□□□ 1.09
LTBR-204ENST00000444814 CCDC88BA6NC98 1476 aa21.85■■□□□ 1.09
LTBR-204ENST00000444814 CFTRP13569 1480 aa21.85■■□□□ 1.09
LTBR-204ENST00000444814 CUX2O14529 1486 aa21.77■■□□□ 1.08
LTBR-204ENST00000444814 CEP164Q9UPV0 1460 aa21.73■■□□□ 1.07
LTBR-204ENST00000444814 FANCD2Q9BXW9 1451 aa21.73■■□□□ 1.07
LTBR-204ENST00000444814 KIF21AQ7Z4S6 1674 aa21.69■■□□□ 1.06
LTBR-204ENST00000444814 MRC2Q9UBG0 1479 aa21.67■■□□□ 1.06
LTBR-204ENST00000444814 PRDM2Q13029 1718 aa21.64■■□□□ 1.06
LTBR-204ENST00000444814 THOC2Q8NI27 1593 aaKnown RBP21.64■■□□□ 1.05
LTBR-204ENST00000444814 WDR62O43379 1518 aa21.56■■□□□ 1.04
LTBR-204ENST00000444814 ABCC8Q09428 1581 aa21.51■■□□□ 1.03
LTBR-204ENST00000444814 URB2Q14146 1524 aaKnown RBP21.43■■□□□ 1.02
LTBR-204ENST00000444814 DNMBPQ6XZF7 1577 aa21.36■■□□□ 1.01
LTBR-204ENST00000444814 TOPBP1Q92547 1522 aa21.36■■□□□ 1.01
LTBR-204ENST00000444814 IFT140Q96RY7 1462 aa21.29■■□□□ 1
LTBR-204ENST00000444814 POLA1P09884 1462 aaPredicted RBP21.17■□□□□ 0.98
LTBR-204ENST00000444814 CUX1P39880 1505 aa21.16■□□□□ 0.98
LTBR-204ENST00000444814 WRNQ14191 1432 aaPredicted RBP eCLIP21.16■□□□□ 0.98
LTBR-204ENST00000444814 SOGA1O94964 1423 aa21.14■□□□□ 0.98
LTBR-204ENST00000444814 FGD5Q6ZNL6 1462 aa21.13■□□□□ 0.97
LTBR-204ENST00000444814 WDR97A6NE52 1622 aa21.07■□□□□ 0.96
LTBR-204ENST00000444814 TARBP1Q13395 1621 aaKnown RBP21.06■□□□□ 0.96
LTBR-204ENST00000444814 TOP2BQ02880 1626 aa21.05■□□□□ 0.96
LTBR-204ENST00000444814 ZNF608Q9ULD9 1512 aaPredicted RBP21.04■□□□□ 0.96
LTBR-204ENST00000444814 RAD54L2Q9Y4B4 1467 aa21.03■□□□□ 0.96
LTBR-204ENST00000444814 BIVM-ERCC5R4GMW8 1640 aa21.02■□□□□ 0.96
LTBR-204ENST00000444814 EIF4G3O43432 1585 aaKnown RBP21■□□□□ 0.95
LTBR-204ENST00000444814 FOXD1Q16676 465 aa20.97■□□□□ 0.95
LTBR-204ENST00000444814 DNAJC5Q9H3Z4 198 aa20.97■□□□□ 0.95
LTBR-204ENST00000444814 SYNJ1O43426 1573 aa20.97■□□□□ 0.95
LTBR-204ENST00000444814 ABCA10Q8WWZ4 1543 aa20.97■□□□□ 0.95
LTBR-204ENST00000444814 TDRD9Q8NDG6 1382 aaKnown RBP20.97■□□□□ 0.95
LTBR-204ENST00000444814 AQRO60306 1485 aaKnown RBP eCLIP20.96■□□□□ 0.952e-9■■■■■ 27
LTBR-204ENST00000444814 GRIN2BQ13224 1484 aa20.92■□□□□ 0.94
LTBR-204ENST00000444814 OSCARQ8IYS5 282 aa20.91■□□□□ 0.94
LTBR-204ENST00000444814 GAPVD1Q14C86 1478 aa20.89■□□□□ 0.94
LTBR-204ENST00000444814 MAGI1Q96QZ7 1491 aaPredicted RBP20.86■□□□□ 0.93
LTBR-204ENST00000444814 FBLN2P98095 1184 aa20.82■□□□□ 0.92
LTBR-204ENST00000444814 ABCA5Q8WWZ7 1642 aa20.81■□□□□ 0.92
LTBR-204ENST00000444814 SNAPC4Q5SXM2 1469 aa20.81■□□□□ 0.92
LTBR-204ENST00000444814 CHMP7Q8WUX9 453 aaPredicted RBP20.8■□□□□ 0.92
LTBR-204ENST00000444814 PBRM1Q86U86 1689 aa20.77■□□□□ 0.91
LTBR-204ENST00000444814 KIF27Q86VH2 1401 aa20.77■□□□□ 0.91
LTBR-204ENST00000444814 SYNJ2O15056 1496 aa20.75■□□□□ 0.91
LTBR-204ENST00000444814 TRIM41Q8WV44 630 aa20.75■□□□□ 0.91
LTBR-204ENST00000444814 ERICH3Q5RHP9 1530 aa20.74■□□□□ 0.91
LTBR-204ENST00000444814 FHAD1B1AJZ9 1412 aa20.69■□□□□ 0.9
LTBR-204ENST00000444814 CHD1O14646 1710 aa20.68■□□□□ 0.9
LTBR-204ENST00000444814 ADAMTS12P58397 1594 aa20.64■□□□□ 0.89
LTBR-204ENST00000444814 GRIN2AQ12879 1464 aa20.6■□□□□ 0.89
LTBR-204ENST00000444814 IGF1RP08069 1367 aa20.57■□□□□ 0.88
LTBR-204ENST00000444814 CUL7Q14999 1698 aa20.56■□□□□ 0.88
LTBR-204ENST00000444814 CARMIL1Q5VZK9 1371 aa20.51■□□□□ 0.87
LTBR-204ENST00000444814 CLASP1Q7Z460 1538 aa20.5■□□□□ 0.87
LTBR-204ENST00000444814 NUP160Q12769 1436 aa20.5■□□□□ 0.87
LTBR-204ENST00000444814 ARHGEF11O15085 1522 aa20.46■□□□□ 0.87
LTBR-204ENST00000444814 EEA1Q15075 1411 aa20.45■□□□□ 0.86
LTBR-204ENST00000444814 RIMBP3CA6NJZ7 1639 aa20.41■□□□□ 0.86
LTBR-204ENST00000444814 RIMBP3BA6NNM3 1639 aa20.41■□□□□ 0.86
LTBR-204ENST00000444814 RIMBP3Q9UFD9 1639 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms