RNA–Protein interactions for RNA: ENST00000444677.5

GARNL3-208, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 4

Gene GARNL3, Length 667 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-208ENST00000444677 NISCHQ9Y2I1 1504 aa32.95■■■□□ 2.87
GARNL3-208ENST00000444677 CCDC180Q9P1Z9 1646 aa29.28■■■□□ 2.28
GARNL3-208ENST00000444677 ABCC9O60706 1549 aa28.96■■■□□ 2.23
GARNL3-208ENST00000444677 DCAF8L2P0C7V8 631 aa27.76■■■□□ 2.03
GARNL3-208ENST00000444677 RB1CC1Q8TDY2 1594 aa27.69■■■□□ 2.02
GARNL3-208ENST00000444677 NACADO15069 1562 aa27.52■■■□□ 2
GARNL3-208ENST00000444677 ZCCHC6Q5VYS8 1495 aaKnown RBP27.41■■□□□ 1.98
GARNL3-208ENST00000444677 MYO15BQ96JP2 1530 aa27.29■■□□□ 1.96
GARNL3-208ENST00000444677 UNC13AQ9UPW8 1703 aa27.24■■□□□ 1.95
GARNL3-208ENST00000444677 DCAF1Q9Y4B6 1507 aa27.16■■□□□ 1.94
GARNL3-208ENST00000444677 PABPN1Q86U42 306 aaKnown RBP eCLIP27.08■■□□□ 1.93
GARNL3-208ENST00000444677 BICRAQ9NZM4 1560 aa26.88■■□□□ 1.89
GARNL3-208ENST00000444677 DNAJC5BQ9UF47 199 aa26.81■■□□□ 1.88
GARNL3-208ENST00000444677 SCRIBQ14160 1630 aa26.75■■□□□ 1.87
GARNL3-208ENST00000444677 SHROOM4Q9ULL8 1493 aa26.48■■□□□ 1.83
GARNL3-208ENST00000444677 CC2D2AQ9P2K1 1620 aa26.21■■□□□ 1.79
GARNL3-208ENST00000444677 EIF4G1Q04637 1599 aaKnown RBP26.2■■□□□ 1.78
GARNL3-208ENST00000444677 CECR2Q9BXF3 1484 aa26.03■■□□□ 1.76
GARNL3-208ENST00000444677 SMARCA4P51532 1647 aa25.52■■□□□ 1.68
GARNL3-208ENST00000444677 ATAD2BQ9ULI0 1458 aa25.5■■□□□ 1.67
GARNL3-208ENST00000444677 NCAPD3P42695 1498 aa25.48■■□□□ 1.67
GARNL3-208ENST00000444677 BAZ1AQ9NRL2 1556 aaPredicted RBP25.48■■□□□ 1.67
GARNL3-208ENST00000444677 MROH2BQ7Z745 1585 aa25.44■■□□□ 1.66
GARNL3-208ENST00000444677 SMARCA2P51531 1590 aa25.35■■□□□ 1.65
GARNL3-208ENST00000444677 HMGXB3Q12766 1538 aa25.27■■□□□ 1.64
GARNL3-208ENST00000444677 PEG3Q9GZU2 1588 aa25.24■■□□□ 1.63
GARNL3-208ENST00000444677 BAZ1BQ9UIG0 1483 aaKnown RBP25.24■■□□□ 1.63
GARNL3-208ENST00000444677 RSF1Q96T23 1441 aaPredicted RBP25.14■■□□□ 1.62
GARNL3-208ENST00000444677 WIZO95785 1651 aa25.1■■□□□ 1.61
GARNL3-208ENST00000444677 ERCC6Q03468 1493 aa24.99■■□□□ 1.59
GARNL3-208ENST00000444677 NESP48681 1621 aa24.97■■□□□ 1.59
GARNL3-208ENST00000444677 LAMC3Q9Y6N6 1575 aa24.82■■□□□ 1.56
GARNL3-208ENST00000444677 CUX2O14529 1486 aa24.82■■□□□ 1.56
GARNL3-208ENST00000444677 TOP2AP11388 1531 aaKnown RBP24.81■■□□□ 1.56
GARNL3-208ENST00000444677 KIF21AQ7Z4S6 1674 aa24.77■■□□□ 1.56
GARNL3-208ENST00000444677 CADPSQ9ULU8 1353 aa24.77■■□□□ 1.56
GARNL3-208ENST00000444677 THOC2Q8NI27 1593 aaKnown RBP24.72■■□□□ 1.55
GARNL3-208ENST00000444677 PDS5BQ9NTI5 1447 aa24.64■■□□□ 1.54
GARNL3-208ENST00000444677 CCDC88BA6NC98 1476 aa24.61■■□□□ 1.53
GARNL3-208ENST00000444677 CFTRP13569 1480 aa24.57■■□□□ 1.52
GARNL3-208ENST00000444677 SUPT5HO00267 1087 aaKnown RBP24.56■■□□□ 1.52
GARNL3-208ENST00000444677 FANCD2Q9BXW9 1451 aa24.45■■□□□ 1.51
GARNL3-208ENST00000444677 MRC2Q9UBG0 1479 aa24.42■■□□□ 1.5
GARNL3-208ENST00000444677 PRDM2Q13029 1718 aa24.41■■□□□ 1.5
GARNL3-208ENST00000444677 DNAJC5Q9H3Z4 198 aa24.4■■□□□ 1.5
GARNL3-208ENST00000444677 CEP164Q9UPV0 1460 aa24.39■■□□□ 1.5
GARNL3-208ENST00000444677 WDR62O43379 1518 aa24.38■■□□□ 1.49
GARNL3-208ENST00000444677 URB2Q14146 1524 aaKnown RBP24.24■■□□□ 1.47
GARNL3-208ENST00000444677 TOPBP1Q92547 1522 aa24.05■■□□□ 1.44
GARNL3-208ENST00000444677 ABCC8Q09428 1581 aa23.95■■□□□ 1.42
GARNL3-208ENST00000444677 DNMBPQ6XZF7 1577 aa23.95■■□□□ 1.42
GARNL3-208ENST00000444677 IFT140Q96RY7 1462 aa23.9■■□□□ 1.42
GARNL3-208ENST00000444677 ZNF608Q9ULD9 1512 aaPredicted RBP23.88■■□□□ 1.41
GARNL3-208ENST00000444677 POLA1P09884 1462 aaPredicted RBP23.85■■□□□ 1.41
GARNL3-208ENST00000444677 CUX1P39880 1505 aa23.84■■□□□ 1.41
GARNL3-208ENST00000444677 RAD54L2Q9Y4B4 1467 aa23.82■■□□□ 1.4
GARNL3-208ENST00000444677 EIF4G3O43432 1585 aaKnown RBP23.81■■□□□ 1.4
GARNL3-208ENST00000444677 SOGA1O94964 1423 aa23.79■■□□□ 1.4
GARNL3-208ENST00000444677 FGD5Q6ZNL6 1462 aa23.78■■□□□ 1.4
GARNL3-208ENST00000444677 AQRO60306 1485 aaKnown RBP eCLIP23.75■■□□□ 1.39
GARNL3-208ENST00000444677 TARBP1Q13395 1621 aaKnown RBP23.75■■□□□ 1.39
GARNL3-208ENST00000444677 TDRD9Q8NDG6 1382 aaKnown RBP23.73■■□□□ 1.39
GARNL3-208ENST00000444677 WRNQ14191 1432 aaPredicted RBP eCLIP23.67■■□□□ 1.38
GARNL3-208ENST00000444677 CHD1O14646 1710 aa23.64■■□□□ 1.37
GARNL3-208ENST00000444677 OSCARQ8IYS5 282 aa23.63■■□□□ 1.37
GARNL3-208ENST00000444677 SYNJ1O43426 1573 aa23.59■■□□□ 1.37
GARNL3-208ENST00000444677 WDR97A6NE52 1622 aa23.55■■□□□ 1.36
GARNL3-208ENST00000444677 TRIM41Q8WV44 630 aa23.55■■□□□ 1.36
GARNL3-208ENST00000444677 TOP2BQ02880 1626 aa23.53■■□□□ 1.36
GARNL3-208ENST00000444677 FBLN2P98095 1184 aa23.53■■□□□ 1.36
GARNL3-208ENST00000444677 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
GARNL3-208ENST00000444677 RIMBP3CA6NJZ7 1639 aa23.49■■□□□ 1.35
GARNL3-208ENST00000444677 RIMBP3BA6NNM3 1639 aa23.49■■□□□ 1.35
GARNL3-208ENST00000444677 RIMBP3Q9UFD9 1639 aa23.49■■□□□ 1.35
GARNL3-208ENST00000444677 BIVM-ERCC5R4GMW8 1640 aa23.49■■□□□ 1.35
GARNL3-208ENST00000444677 GAPVD1Q14C86 1478 aa23.47■■□□□ 1.35
GARNL3-208ENST00000444677 SNAPC4Q5SXM2 1469 aa23.47■■□□□ 1.35
GARNL3-208ENST00000444677 PBRM1Q86U86 1689 aa23.47■■□□□ 1.35
GARNL3-208ENST00000444677 GRIN2BQ13224 1484 aa23.46■■□□□ 1.35
GARNL3-208ENST00000444677 CHMP7Q8WUX9 453 aaPredicted RBP23.4■■□□□ 1.34
GARNL3-208ENST00000444677 ARHGEF11O15085 1522 aa23.39■■□□□ 1.34
GARNL3-208ENST00000444677 ABCA5Q8WWZ7 1642 aa23.36■■□□□ 1.33
GARNL3-208ENST00000444677 MAGI1Q96QZ7 1491 aaPredicted RBP23.36■■□□□ 1.33
GARNL3-208ENST00000444677 SYNJ2O15056 1496 aa23.3■■□□□ 1.32
GARNL3-208ENST00000444677 CLASP1Q7Z460 1538 aa23.24■■□□□ 1.31
GARNL3-208ENST00000444677 FHAD1B1AJZ9 1412 aa23.19■■□□□ 1.3
GARNL3-208ENST00000444677 ERICH3Q5RHP9 1530 aa23.18■■□□□ 1.3
GARNL3-208ENST00000444677 ADAMTS12P58397 1594 aa23.18■■□□□ 1.3
GARNL3-208ENST00000444677 ARAP1Q96P48 1450 aa23.17■■□□□ 1.3
GARNL3-208ENST00000444677 IGF1RP08069 1367 aa23.17■■□□□ 1.3
GARNL3-208ENST00000444677 KIF27Q86VH2 1401 aa23.16■■□□□ 1.3
GARNL3-208ENST00000444677 GRIN2AQ12879 1464 aa23.16■■□□□ 1.3
GARNL3-208ENST00000444677 CYB5RLQ6IPT4 315 aa23.09■■□□□ 1.29
GARNL3-208ENST00000444677 NUP160Q12769 1436 aa23.08■■□□□ 1.28
GARNL3-208ENST00000444677 RUSC2Q8N2Y8 1516 aa23.05■■□□□ 1.28
GARNL3-208ENST00000444677 CEP170Q5SW79 1584 aa23.04■■□□□ 1.28
GARNL3-208ENST00000444677 CARMIL1Q5VZK9 1371 aa23.01■■□□□ 1.27
GARNL3-208ENST00000444677 ERCC6L2Q5T890 1561 aa22.93■■□□□ 1.26
GARNL3-208ENST00000444677 JPH4Q96JJ6 628 aa22.92■■□□□ 1.26
GARNL3-208ENST00000444677 SHROOM2Q13796 1616 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms