RNA–Protein interactions for RNA: ENST00000444532.2

CCDC188-202, Transcript of coiled-coil domain containing 188, humanhuman

TSL 3

Gene CCDC188, Length 628 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188-202ENST00000444532 NISCHQ9Y2I1 1504 aa45.53■■■■■ 4.88
CCDC188-202ENST00000444532 CCDC180Q9P1Z9 1646 aa40.59■■■■■ 4.09
CCDC188-202ENST00000444532 ABCC9O60706 1549 aa39.83■■■■□ 3.97
CCDC188-202ENST00000444532 RB1CC1Q8TDY2 1594 aa38.29■■■■□ 3.72
CCDC188-202ENST00000444532 NACADO15069 1562 aa38.21■■■■□ 3.71
CCDC188-202ENST00000444532 DCAF8L2P0C7V8 631 aa38.11■■■■□ 3.69
CCDC188-202ENST00000444532 MYO15BQ96JP2 1530 aa37.94■■■■□ 3.66
CCDC188-202ENST00000444532 ZCCHC6Q5VYS8 1495 aaKnown RBP37.87■■■■□ 3.65
CCDC188-202ENST00000444532 DCAF1Q9Y4B6 1507 aa37.7■■■■□ 3.63
CCDC188-202ENST00000444532 UNC13AQ9UPW8 1703 aa37.41■■■■□ 3.58
CCDC188-202ENST00000444532 PABPN1Q86U42 306 aaKnown RBP eCLIP37.19■■■■□ 3.54
CCDC188-202ENST00000444532 BICRAQ9NZM4 1560 aa37.11■■■■□ 3.53
CCDC188-202ENST00000444532 SCRIBQ14160 1630 aa36.96■■■■□ 3.51
CCDC188-202ENST00000444532 SHROOM4Q9ULL8 1493 aa36.75■■■■□ 3.47
CCDC188-202ENST00000444532 DNAJC5BQ9UF47 199 aa36.73■■■■□ 3.47
CCDC188-202ENST00000444532 EIF4G1Q04637 1599 aaKnown RBP36.15■■■■□ 3.38
CCDC188-202ENST00000444532 CC2D2AQ9P2K1 1620 aa36.05■■■■□ 3.36
CCDC188-202ENST00000444532 CECR2Q9BXF3 1484 aa35.83■■■■□ 3.33
CCDC188-202ENST00000444532 SMARCA4P51532 1647 aa35.37■■■■□ 3.25
CCDC188-202ENST00000444532 BAZ1AQ9NRL2 1556 aaPredicted RBP35.31■■■■□ 3.24
CCDC188-202ENST00000444532 NCAPD3P42695 1498 aa35.25■■■■□ 3.23
CCDC188-202ENST00000444532 ATAD2BQ9ULI0 1458 aa35.22■■■■□ 3.23
CCDC188-202ENST00000444532 SMARCA2P51531 1590 aa35.2■■■■□ 3.23
CCDC188-202ENST00000444532 MROH2BQ7Z745 1585 aa35.07■■■■□ 3.2
CCDC188-202ENST00000444532 HMGXB3Q12766 1538 aa35.05■■■■□ 3.2
CCDC188-202ENST00000444532 PEG3Q9GZU2 1588 aa35.04■■■■□ 3.2
CCDC188-202ENST00000444532 BAZ1BQ9UIG0 1483 aaKnown RBP34.92■■■■□ 3.18
CCDC188-202ENST00000444532 WIZO95785 1651 aa34.69■■■■□ 3.14
CCDC188-202ENST00000444532 RSF1Q96T23 1441 aaPredicted RBP34.61■■■■□ 3.13
CCDC188-202ENST00000444532 NESP48681 1621 aa34.41■■■■□ 3.1
CCDC188-202ENST00000444532 ERCC6Q03468 1493 aa34.37■■■■□ 3.09
CCDC188-202ENST00000444532 LAMC3Q9Y6N6 1575 aa34.36■■■■□ 3.09
CCDC188-202ENST00000444532 TOP2AP11388 1531 aaKnown RBP34.31■■■■□ 3.08
CCDC188-202ENST00000444532 CADPSQ9ULU8 1353 aa34.21■■■■□ 3.07
CCDC188-202ENST00000444532 PDS5BQ9NTI5 1447 aa34.13■■■■□ 3.05
CCDC188-202ENST00000444532 CUX2O14529 1486 aa34.1■■■■□ 3.05
CCDC188-202ENST00000444532 KIF21AQ7Z4S6 1674 aa34.03■■■■□ 3.04
CCDC188-202ENST00000444532 CFTRP13569 1480 aa33.96■■■■□ 3.03
CCDC188-202ENST00000444532 THOC2Q8NI27 1593 aaKnown RBP33.94■■■■□ 3.02
CCDC188-202ENST00000444532 CCDC88BA6NC98 1476 aa33.92■■■■□ 3.02
CCDC188-202ENST00000444532 FANCD2Q9BXW9 1451 aa33.8■■■■□ 3
CCDC188-202ENST00000444532 CEP164Q9UPV0 1460 aa33.78■■■■□ 3
CCDC188-202ENST00000444532 MRC2Q9UBG0 1479 aa33.76■■■■□ 3
CCDC188-202ENST00000444532 PRDM2Q13029 1718 aa33.71■■■□□ 2.99
CCDC188-202ENST00000444532 WDR62O43379 1518 aa33.66■■■□□ 2.98
CCDC188-202ENST00000444532 SUPT5HO00267 1087 aaKnown RBP33.58■■■□□ 2.97
CCDC188-202ENST00000444532 URB2Q14146 1524 aaKnown RBP33.46■■■□□ 2.95
CCDC188-202ENST00000444532 DNAJC5Q9H3Z4 198 aa33.28■■■□□ 2.92
CCDC188-202ENST00000444532 ABCC8Q09428 1581 aa33.28■■■□□ 2.92
CCDC188-202ENST00000444532 TOPBP1Q92547 1522 aa33.23■■■□□ 2.91
CCDC188-202ENST00000444532 DNMBPQ6XZF7 1577 aa33.19■■■□□ 2.9
CCDC188-202ENST00000444532 IFT140Q96RY7 1462 aa33.08■■■□□ 2.89
CCDC188-202ENST00000444532 POLA1P09884 1462 aaPredicted RBP32.93■■■□□ 2.86
CCDC188-202ENST00000444532 CUX1P39880 1505 aa32.92■■■□□ 2.86
CCDC188-202ENST00000444532 ZNF608Q9ULD9 1512 aaPredicted RBP32.92■■■□□ 2.86
CCDC188-202ENST00000444532 TARBP1Q13395 1621 aaKnown RBP32.9■■■□□ 2.86
CCDC188-202ENST00000444532 SOGA1O94964 1423 aa32.83■■■□□ 2.85
CCDC188-202ENST00000444532 FGD5Q6ZNL6 1462 aa32.82■■■□□ 2.84
CCDC188-202ENST00000444532 RAD54L2Q9Y4B4 1467 aa32.79■■■□□ 2.84
CCDC188-202ENST00000444532 EIF4G3O43432 1585 aaKnown RBP32.79■■■□□ 2.84
CCDC188-202ENST00000444532 AQRO60306 1485 aaKnown RBP eCLIP32.73■■■□□ 2.83
CCDC188-202ENST00000444532 OSCARQ8IYS5 282 aa32.68■■■□□ 2.82
CCDC188-202ENST00000444532 WDR97A6NE52 1622 aa32.66■■■□□ 2.82
CCDC188-202ENST00000444532 WRNQ14191 1432 aaPredicted RBP eCLIP32.64■■■□□ 2.82
CCDC188-202ENST00000444532 TDRD9Q8NDG6 1382 aaKnown RBP32.64■■■□□ 2.82
CCDC188-202ENST00000444532 TOP2BQ02880 1626 aa32.6■■■□□ 2.81
CCDC188-202ENST00000444532 BIVM-ERCC5R4GMW8 1640 aa32.6■■■□□ 2.81
CCDC188-202ENST00000444532 SYNJ1O43426 1573 aa32.55■■■□□ 2.8
CCDC188-202ENST00000444532 ABCA10Q8WWZ4 1543 aa32.52■■■□□ 2.8
CCDC188-202ENST00000444532 GRIN2BQ13224 1484 aa32.46■■■□□ 2.79
CCDC188-202ENST00000444532 GAPVD1Q14C86 1478 aa32.44■■■□□ 2.78
CCDC188-202ENST00000444532 CHD1O14646 1710 aa32.43■■■□□ 2.78
CCDC188-202ENST00000444532 SNAPC4Q5SXM2 1469 aa32.41■■■□□ 2.78
CCDC188-202ENST00000444532 MAGI1Q96QZ7 1491 aaPredicted RBP32.4■■■□□ 2.78
CCDC188-202ENST00000444532 ABCA5Q8WWZ7 1642 aa32.4■■■□□ 2.78
CCDC188-202ENST00000444532 PBRM1Q86U86 1689 aa32.38■■■□□ 2.77
CCDC188-202ENST00000444532 FBLN2P98095 1184 aa32.38■■■□□ 2.77
CCDC188-202ENST00000444532 CHMP7Q8WUX9 453 aaPredicted RBP32.28■■■□□ 2.76
CCDC188-202ENST00000444532 SYNJ2O15056 1496 aa32.27■■■□□ 2.76
CCDC188-202ENST00000444532 ERICH3Q5RHP9 1530 aa32.15■■■□□ 2.74
CCDC188-202ENST00000444532 RIMBP3CA6NJZ7 1639 aa32.13■■■□□ 2.73
CCDC188-202ENST00000444532 RIMBP3BA6NNM3 1639 aa32.13■■■□□ 2.73
CCDC188-202ENST00000444532 RIMBP3Q9UFD9 1639 aa32.13■■■□□ 2.73
CCDC188-202ENST00000444532 ARHGEF11O15085 1522 aa32.1■■■□□ 2.73
CCDC188-202ENST00000444532 ADAMTS12P58397 1594 aa32.09■■■□□ 2.73
CCDC188-202ENST00000444532 CLASP1Q7Z460 1538 aa32.07■■■□□ 2.72
CCDC188-202ENST00000444532 TRIM41Q8WV44 630 aa32.06■■■□□ 2.72
CCDC188-202ENST00000444532 FHAD1B1AJZ9 1412 aa32.06■■■□□ 2.72
CCDC188-202ENST00000444532 GRIN2AQ12879 1464 aa32.03■■■□□ 2.72
CCDC188-202ENST00000444532 KIF27Q86VH2 1401 aa32■■■□□ 2.71
CCDC188-202ENST00000444532 NUP160Q12769 1436 aa31.9■■■□□ 2.7
CCDC188-202ENST00000444532 IGF1RP08069 1367 aa31.89■■■□□ 2.7
CCDC188-202ENST00000444532 CEP170Q5SW79 1584 aa31.86■■■□□ 2.69
CCDC188-202ENST00000444532 CYB5RLQ6IPT4 315 aa31.83■■■□□ 2.69
CCDC188-202ENST00000444532 CUL7Q14999 1698 aa31.82■■■□□ 2.68
CCDC188-202ENST00000444532 ARAP1Q96P48 1450 aa31.81■■■□□ 2.68
CCDC188-202ENST00000444532 CARMIL1Q5VZK9 1371 aa31.69■■■□□ 2.66
CCDC188-202ENST00000444532 SHROOM2Q13796 1616 aa31.69■■■□□ 2.66
CCDC188-202ENST00000444532 RUSC2Q8N2Y8 1516 aa31.61■■■□□ 2.65
CCDC188-202ENST00000444532 JPH4Q96JJ6 628 aa31.6■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms