RNA–Protein interactions for RNA: ENST00000444408.1

AP1S3-207, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 4

Gene AP1S3, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-207ENST00000444408 NISCHQ9Y2I1 1504 aa41.37■■■■■ 4.21
AP1S3-207ENST00000444408 CCDC180Q9P1Z9 1646 aa36.59■■■■□ 3.45
AP1S3-207ENST00000444408 ABCC9O60706 1549 aa35.93■■■■□ 3.34
AP1S3-207ENST00000444408 DCAF8L2P0C7V8 631 aa34.59■■■■□ 3.13
AP1S3-207ENST00000444408 ZCCHC6Q5VYS8 1495 aaKnown RBP34.51■■■■□ 3.11
AP1S3-207ENST00000444408 NACADO15069 1562 aa34.38■■■■□ 3.09
AP1S3-207ENST00000444408 RB1CC1Q8TDY2 1594 aa34.38■■■■□ 3.09
AP1S3-207ENST00000444408 MYO15BQ96JP2 1530 aa34.2■■■■□ 3.06
AP1S3-207ENST00000444408 DCAF1Q9Y4B6 1507 aa34.14■■■■□ 3.06
AP1S3-207ENST00000444408 DNAJC5BQ9UF47 199 aa34.01■■■■□ 3.03
AP1S3-207ENST00000444408 UNC13AQ9UPW8 1703 aa33.65■■■□□ 2.98
AP1S3-207ENST00000444408 SCRIBQ14160 1630 aa33.55■■■□□ 2.96
AP1S3-207ENST00000444408 PABPN1Q86U42 306 aaKnown RBP eCLIP33.55■■■□□ 2.96
AP1S3-207ENST00000444408 BICRAQ9NZM4 1560 aa33.44■■■□□ 2.94
AP1S3-207ENST00000444408 SHROOM4Q9ULL8 1493 aa32.95■■■□□ 2.87
AP1S3-207ENST00000444408 EIF4G1Q04637 1599 aaKnown RBP32.5■■■□□ 2.79
AP1S3-207ENST00000444408 CC2D2AQ9P2K1 1620 aa32.46■■■□□ 2.79
AP1S3-207ENST00000444408 CECR2Q9BXF3 1484 aa32.44■■■□□ 2.78
AP1S3-207ENST00000444408 SMARCA4P51532 1647 aa32.05■■■□□ 2.72
AP1S3-207ENST00000444408 BAZ1AQ9NRL2 1556 aaPredicted RBP32■■■□□ 2.71
AP1S3-207ENST00000444408 MROH2BQ7Z745 1585 aa31.96■■■□□ 2.71
AP1S3-207ENST00000444408 ATAD2BQ9ULI0 1458 aa31.85■■■□□ 2.69
AP1S3-207ENST00000444408 NCAPD3P42695 1498 aa31.77■■■□□ 2.68
AP1S3-207ENST00000444408 SMARCA2P51531 1590 aa31.75■■■□□ 2.67
AP1S3-207ENST00000444408 PEG3Q9GZU2 1588 aa31.68■■■□□ 2.66
AP1S3-207ENST00000444408 RSF1Q96T23 1441 aaPredicted RBP31.65■■■□□ 2.66
AP1S3-207ENST00000444408 WIZO95785 1651 aa31.6■■■□□ 2.65
AP1S3-207ENST00000444408 HMGXB3Q12766 1538 aa31.59■■■□□ 2.65
AP1S3-207ENST00000444408 BAZ1BQ9UIG0 1483 aaKnown RBP31.58■■■□□ 2.65
AP1S3-207ENST00000444408 DNAJC5Q9H3Z4 198 aa31.54■■■□□ 2.64
AP1S3-207ENST00000444408 TOP2AP11388 1531 aaKnown RBP31.22■■■□□ 2.59
AP1S3-207ENST00000444408 CUX2O14529 1486 aa31.17■■■□□ 2.58
AP1S3-207ENST00000444408 ERCC6Q03468 1493 aa31.08■■■□□ 2.57
AP1S3-207ENST00000444408 NESP48681 1621 aa31.07■■■□□ 2.56
AP1S3-207ENST00000444408 SUPT5HO00267 1087 aaKnown RBP31.06■■■□□ 2.56
AP1S3-207ENST00000444408 CCDC88BA6NC98 1476 aa30.91■■■□□ 2.54
AP1S3-207ENST00000444408 CADPSQ9ULU8 1353 aa30.87■■■□□ 2.53
AP1S3-207ENST00000444408 LAMC3Q9Y6N6 1575 aa30.86■■■□□ 2.53
AP1S3-207ENST00000444408 CFTRP13569 1480 aa30.72■■■□□ 2.51
AP1S3-207ENST00000444408 PDS5BQ9NTI5 1447 aa30.65■■■□□ 2.5
AP1S3-207ENST00000444408 KIF21AQ7Z4S6 1674 aa30.62■■■□□ 2.49
AP1S3-207ENST00000444408 FANCD2Q9BXW9 1451 aa30.54■■■□□ 2.48
AP1S3-207ENST00000444408 THOC2Q8NI27 1593 aaKnown RBP30.54■■■□□ 2.48
AP1S3-207ENST00000444408 CEP164Q9UPV0 1460 aa30.45■■■□□ 2.47
AP1S3-207ENST00000444408 PRDM2Q13029 1718 aa30.41■■■□□ 2.46
AP1S3-207ENST00000444408 MRC2Q9UBG0 1479 aa30.38■■■□□ 2.45
AP1S3-207ENST00000444408 URB2Q14146 1524 aaKnown RBP30.26■■■□□ 2.43
AP1S3-207ENST00000444408 WDR62O43379 1518 aa30.25■■■□□ 2.43
AP1S3-207ENST00000444408 TOPBP1Q92547 1522 aa30.07■■■□□ 2.4
AP1S3-207ENST00000444408 DNMBPQ6XZF7 1577 aa30.01■■■□□ 2.39
AP1S3-207ENST00000444408 ABCC8Q09428 1581 aa29.96■■■□□ 2.39
AP1S3-207ENST00000444408 TRIM41Q8WV44 630 aa29.95■■■□□ 2.39
AP1S3-207ENST00000444408 CUX1P39880 1505 aa29.95■■■□□ 2.38
AP1S3-207ENST00000444408 POLA1P09884 1462 aaPredicted RBP29.84■■■□□ 2.37
AP1S3-207ENST00000444408 FGD5Q6ZNL6 1462 aa29.8■■■□□ 2.36
AP1S3-207ENST00000444408 IFT140Q96RY7 1462 aa29.79■■■□□ 2.36
AP1S3-207ENST00000444408 WRNQ14191 1432 aaPredicted RBP eCLIP29.79■■■□□ 2.36
AP1S3-207ENST00000444408 RAD54L2Q9Y4B4 1467 aa29.77■■■□□ 2.36
AP1S3-207ENST00000444408 SYNJ1O43426 1573 aa29.75■■■□□ 2.35
AP1S3-207ENST00000444408 ZNF608Q9ULD9 1512 aaPredicted RBP29.75■■■□□ 2.35
AP1S3-207ENST00000444408 TARBP1Q13395 1621 aaKnown RBP29.72■■■□□ 2.35
AP1S3-207ENST00000444408 SOGA1O94964 1423 aa29.71■■■□□ 2.35
AP1S3-207ENST00000444408 OSCARQ8IYS5 282 aa29.7■■■□□ 2.35
AP1S3-207ENST00000444408 TOP2BQ02880 1626 aa29.67■■■□□ 2.34
AP1S3-207ENST00000444408 BIVM-ERCC5R4GMW8 1640 aa29.67■■■□□ 2.34
AP1S3-207ENST00000444408 AQRO60306 1485 aaKnown RBP eCLIP29.6■■■□□ 2.33
AP1S3-207ENST00000444408 TDRD9Q8NDG6 1382 aaKnown RBP29.58■■■□□ 2.33
AP1S3-207ENST00000444408 EIF4G3O43432 1585 aaKnown RBP29.56■■■□□ 2.32
AP1S3-207ENST00000444408 WDR97A6NE52 1622 aa29.49■■■□□ 2.31
AP1S3-207ENST00000444408 ABCA10Q8WWZ4 1543 aa29.47■■■□□ 2.31
AP1S3-207ENST00000444408 GAPVD1Q14C86 1478 aa29.36■■■□□ 2.29
AP1S3-207ENST00000444408 ABCA5Q8WWZ7 1642 aa29.35■■■□□ 2.29
AP1S3-207ENST00000444408 GRIN2BQ13224 1484 aa29.31■■■□□ 2.28
AP1S3-207ENST00000444408 RIMBP3CA6NJZ7 1639 aa29.3■■■□□ 2.28
AP1S3-207ENST00000444408 RIMBP3BA6NNM3 1639 aa29.3■■■□□ 2.28
AP1S3-207ENST00000444408 RIMBP3Q9UFD9 1639 aa29.3■■■□□ 2.28
AP1S3-207ENST00000444408 SNAPC4Q5SXM2 1469 aa29.29■■■□□ 2.28
AP1S3-207ENST00000444408 PBRM1Q86U86 1689 aa29.25■■■□□ 2.27
AP1S3-207ENST00000444408 FBLN2P98095 1184 aa29.2■■■□□ 2.26
AP1S3-207ENST00000444408 MAGI1Q96QZ7 1491 aaPredicted RBP29.18■■■□□ 2.26
AP1S3-207ENST00000444408 ARHGEF11O15085 1522 aa29.18■■■□□ 2.26
AP1S3-207ENST00000444408 CHD1O14646 1710 aa29.15■■■□□ 2.26
AP1S3-207ENST00000444408 KIF27Q86VH2 1401 aa29.12■■■□□ 2.25
AP1S3-207ENST00000444408 ERICH3Q5RHP9 1530 aa29.1■■■□□ 2.25
AP1S3-207ENST00000444408 CHMP7Q8WUX9 453 aaPredicted RBP29.09■■■□□ 2.25
AP1S3-207ENST00000444408 SYNJ2O15056 1496 aa29.09■■■□□ 2.25
AP1S3-207ENST00000444408 CHIC1Q5VXU3 224 aa29.08■■■□□ 2.25
AP1S3-207ENST00000444408 RUSC2Q8N2Y8 1516 aa29.08■■■□□ 2.25
AP1S3-207ENST00000444408 ADAMTS12P58397 1594 aa29.06■■■□□ 2.24
AP1S3-207ENST00000444408 IGF1RP08069 1367 aa29.04■■■□□ 2.24
AP1S3-207ENST00000444408 FHAD1B1AJZ9 1412 aa29.01■■■□□ 2.23
AP1S3-207ENST00000444408 CYB5RLQ6IPT4 315 aa28.99■■■□□ 2.23
AP1S3-207ENST00000444408 GRIN2AQ12879 1464 aa28.96■■■□□ 2.23
AP1S3-207ENST00000444408 ARAP1Q96P48 1450 aa28.86■■■□□ 2.21
AP1S3-207ENST00000444408 CARMIL1Q5VZK9 1371 aa28.86■■■□□ 2.21
AP1S3-207ENST00000444408 CUL7Q14999 1698 aa28.85■■■□□ 2.21
AP1S3-207ENST00000444408 CLASP1Q7Z460 1538 aa28.84■■■□□ 2.21
AP1S3-207ENST00000444408 CEP170Q5SW79 1584 aa28.84■■■□□ 2.21
AP1S3-207ENST00000444408 NUP160Q12769 1436 aa28.81■■■□□ 2.2
AP1S3-207ENST00000444408 TRHP20396 242 aaPredicted RBP28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms