RNA–Protein interactions for RNA: ENST00000444058.1

ATPAF2-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 2, humanhuman

TSL 3

Gene ATPAF2, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF2-201ENST00000444058 NISCHQ9Y2I1 1504 aa46.33■■■■■ 5.01
ATPAF2-201ENST00000444058 CCDC180Q9P1Z9 1646 aa41.33■■■■■ 4.21
ATPAF2-201ENST00000444058 ABCC9O60706 1549 aa40.7■■■■■ 4.11
ATPAF2-201ENST00000444058 RB1CC1Q8TDY2 1594 aa39.08■■■■□ 3.85
ATPAF2-201ENST00000444058 NACADO15069 1562 aa38.98■■■■□ 3.83
ATPAF2-201ENST00000444058 DCAF8L2P0C7V8 631 aa38.77■■■■□ 3.8
ATPAF2-201ENST00000444058 MYO15BQ96JP2 1530 aa38.71■■■■□ 3.79
ATPAF2-201ENST00000444058 ZCCHC6Q5VYS8 1495 aaKnown RBP38.52■■■■□ 3.76
ATPAF2-201ENST00000444058 DCAF1Q9Y4B6 1507 aa38.38■■■■□ 3.74
ATPAF2-201ENST00000444058 UNC13AQ9UPW8 1703 aa38.07■■■■□ 3.69
ATPAF2-201ENST00000444058 PABPN1Q86U42 306 aaKnown RBP eCLIP37.98■■■■□ 3.67
ATPAF2-201ENST00000444058 BICRAQ9NZM4 1560 aa37.88■■■■□ 3.65
ATPAF2-201ENST00000444058 DNAJC5BQ9UF47 199 aa37.7■■■■□ 3.63
ATPAF2-201ENST00000444058 SCRIBQ14160 1630 aa37.59■■■■□ 3.61
ATPAF2-201ENST00000444058 SHROOM4Q9ULL8 1493 aa37.58■■■■□ 3.61
ATPAF2-201ENST00000444058 EIF4G1Q04637 1599 aaKnown RBP36.91■■■■□ 3.5
ATPAF2-201ENST00000444058 CC2D2AQ9P2K1 1620 aa36.82■■■■□ 3.49
ATPAF2-201ENST00000444058 CECR2Q9BXF3 1484 aa36.66■■■■□ 3.46
ATPAF2-201ENST00000444058 NCAPD3P42695 1498 aa36■■■■□ 3.35
ATPAF2-201ENST00000444058 SMARCA4P51532 1647 aa35.98■■■■□ 3.35
ATPAF2-201ENST00000444058 BAZ1AQ9NRL2 1556 aaPredicted RBP35.94■■■■□ 3.34
ATPAF2-201ENST00000444058 ATAD2BQ9ULI0 1458 aa35.92■■■■□ 3.34
ATPAF2-201ENST00000444058 SMARCA2P51531 1590 aa35.87■■■■□ 3.33
ATPAF2-201ENST00000444058 HMGXB3Q12766 1538 aa35.75■■■■□ 3.31
ATPAF2-201ENST00000444058 PEG3Q9GZU2 1588 aa35.72■■■■□ 3.31
ATPAF2-201ENST00000444058 MROH2BQ7Z745 1585 aa35.66■■■■□ 3.3
ATPAF2-201ENST00000444058 BAZ1BQ9UIG0 1483 aaKnown RBP35.59■■■■□ 3.29
ATPAF2-201ENST00000444058 WIZO95785 1651 aa35.21■■■■□ 3.23
ATPAF2-201ENST00000444058 RSF1Q96T23 1441 aaPredicted RBP35.17■■■■□ 3.22
ATPAF2-201ENST00000444058 ERCC6Q03468 1493 aa35.14■■■■□ 3.22
ATPAF2-201ENST00000444058 NESP48681 1621 aa35.11■■■■□ 3.21
ATPAF2-201ENST00000444058 LAMC3Q9Y6N6 1575 aa35.06■■■■□ 3.2
ATPAF2-201ENST00000444058 CUX2O14529 1486 aa34.95■■■■□ 3.19
ATPAF2-201ENST00000444058 CADPSQ9ULU8 1353 aa34.91■■■■□ 3.18
ATPAF2-201ENST00000444058 TOP2AP11388 1531 aaKnown RBP34.89■■■■□ 3.18
ATPAF2-201ENST00000444058 PDS5BQ9NTI5 1447 aa34.86■■■■□ 3.17
ATPAF2-201ENST00000444058 THOC2Q8NI27 1593 aaKnown RBP34.68■■■■□ 3.14
ATPAF2-201ENST00000444058 KIF21AQ7Z4S6 1674 aa34.66■■■■□ 3.14
ATPAF2-201ENST00000444058 CFTRP13569 1480 aa34.64■■■■□ 3.14
ATPAF2-201ENST00000444058 MRC2Q9UBG0 1479 aa34.48■■■■□ 3.11
ATPAF2-201ENST00000444058 CCDC88BA6NC98 1476 aa34.47■■■■□ 3.11
ATPAF2-201ENST00000444058 FANCD2Q9BXW9 1451 aa34.46■■■■□ 3.11
ATPAF2-201ENST00000444058 CEP164Q9UPV0 1460 aa34.46■■■■□ 3.11
ATPAF2-201ENST00000444058 WDR62O43379 1518 aa34.39■■■■□ 3.1
ATPAF2-201ENST00000444058 DNAJC5Q9H3Z4 198 aa34.29■■■■□ 3.08
ATPAF2-201ENST00000444058 PRDM2Q13029 1718 aa34.24■■■■□ 3.07
ATPAF2-201ENST00000444058 URB2Q14146 1524 aaKnown RBP34.12■■■■□ 3.05
ATPAF2-201ENST00000444058 SUPT5HO00267 1087 aaKnown RBP33.95■■■■□ 3.03
ATPAF2-201ENST00000444058 ABCC8Q09428 1581 aa33.94■■■■□ 3.02
ATPAF2-201ENST00000444058 TOPBP1Q92547 1522 aa33.87■■■■□ 3.01
ATPAF2-201ENST00000444058 DNMBPQ6XZF7 1577 aa33.81■■■■□ 3
ATPAF2-201ENST00000444058 IFT140Q96RY7 1462 aa33.78■■■■□ 3
ATPAF2-201ENST00000444058 ZNF608Q9ULD9 1512 aaPredicted RBP33.59■■■□□ 2.97
ATPAF2-201ENST00000444058 POLA1P09884 1462 aaPredicted RBP33.56■■■□□ 2.96
ATPAF2-201ENST00000444058 TARBP1Q13395 1621 aaKnown RBP33.52■■■□□ 2.96
ATPAF2-201ENST00000444058 CUX1P39880 1505 aa33.47■■■□□ 2.95
ATPAF2-201ENST00000444058 OSCARQ8IYS5 282 aa33.46■■■□□ 2.95
ATPAF2-201ENST00000444058 SOGA1O94964 1423 aa33.44■■■□□ 2.94
ATPAF2-201ENST00000444058 EIF4G3O43432 1585 aaKnown RBP33.43■■■□□ 2.94
ATPAF2-201ENST00000444058 FGD5Q6ZNL6 1462 aa33.42■■■□□ 2.94
ATPAF2-201ENST00000444058 RAD54L2Q9Y4B4 1467 aa33.39■■■□□ 2.94
ATPAF2-201ENST00000444058 AQRO60306 1485 aaKnown RBP eCLIP33.37■■■□□ 2.93
ATPAF2-201ENST00000444058 WDR97A6NE52 1622 aa33.31■■■□□ 2.92
ATPAF2-201ENST00000444058 TDRD9Q8NDG6 1382 aaKnown RBP33.26■■■□□ 2.92
ATPAF2-201ENST00000444058 WRNQ14191 1432 aaPredicted RBP eCLIP33.17■■■□□ 2.9
ATPAF2-201ENST00000444058 ABCA10Q8WWZ4 1543 aa33.12■■■□□ 2.89
ATPAF2-201ENST00000444058 TOP2BQ02880 1626 aa33.12■■■□□ 2.89
ATPAF2-201ENST00000444058 BIVM-ERCC5R4GMW8 1640 aa33.1■■■□□ 2.89
ATPAF2-201ENST00000444058 GRIN2BQ13224 1484 aa33.09■■■□□ 2.89
ATPAF2-201ENST00000444058 MAGI1Q96QZ7 1491 aaPredicted RBP33.06■■■□□ 2.88
ATPAF2-201ENST00000444058 SNAPC4Q5SXM2 1469 aa33.05■■■□□ 2.88
ATPAF2-201ENST00000444058 SYNJ1O43426 1573 aa33.04■■■□□ 2.88
ATPAF2-201ENST00000444058 GAPVD1Q14C86 1478 aa33.04■■■□□ 2.88
ATPAF2-201ENST00000444058 CHD1O14646 1710 aa33.03■■■□□ 2.88
ATPAF2-201ENST00000444058 FBLN2P98095 1184 aa33.02■■■□□ 2.88
ATPAF2-201ENST00000444058 ABCA5Q8WWZ7 1642 aa32.98■■■□□ 2.87
ATPAF2-201ENST00000444058 CHMP7Q8WUX9 453 aaPredicted RBP32.94■■■□□ 2.86
ATPAF2-201ENST00000444058 SYNJ2O15056 1496 aa32.93■■■□□ 2.86
ATPAF2-201ENST00000444058 PBRM1Q86U86 1689 aa32.91■■■□□ 2.86
ATPAF2-201ENST00000444058 TRIM41Q8WV44 630 aa32.89■■■□□ 2.86
ATPAF2-201ENST00000444058 RIMBP3CA6NJZ7 1639 aa32.86■■■□□ 2.85
ATPAF2-201ENST00000444058 RIMBP3BA6NNM3 1639 aa32.86■■■□□ 2.85
ATPAF2-201ENST00000444058 RIMBP3Q9UFD9 1639 aa32.86■■■□□ 2.85
ATPAF2-201ENST00000444058 ARHGEF11O15085 1522 aa32.86■■■□□ 2.85
ATPAF2-201ENST00000444058 CLASP1Q7Z460 1538 aa32.76■■■□□ 2.83
ATPAF2-201ENST00000444058 ERICH3Q5RHP9 1530 aa32.72■■■□□ 2.83
ATPAF2-201ENST00000444058 ADAMTS12P58397 1594 aa32.68■■■□□ 2.82
ATPAF2-201ENST00000444058 FHAD1B1AJZ9 1412 aa32.67■■■□□ 2.82
ATPAF2-201ENST00000444058 GRIN2AQ12879 1464 aa32.66■■■□□ 2.82
ATPAF2-201ENST00000444058 CYB5RLQ6IPT4 315 aa32.57■■■□□ 2.8
ATPAF2-201ENST00000444058 ARAP1Q96P48 1450 aa32.55■■■□□ 2.8
ATPAF2-201ENST00000444058 NUP160Q12769 1436 aa32.55■■■□□ 2.8
ATPAF2-201ENST00000444058 KIF27Q86VH2 1401 aa32.52■■■□□ 2.8
ATPAF2-201ENST00000444058 CEP170Q5SW79 1584 aa32.47■■■□□ 2.79
ATPAF2-201ENST00000444058 IGF1RP08069 1367 aa32.44■■■□□ 2.78
ATPAF2-201ENST00000444058 CUL7Q14999 1698 aa32.33■■■□□ 2.77
ATPAF2-201ENST00000444058 SHROOM2Q13796 1616 aa32.32■■■□□ 2.76
ATPAF2-201ENST00000444058 CARMIL1Q5VZK9 1371 aa32.22■■■□□ 2.75
ATPAF2-201ENST00000444058 JPH4Q96JJ6 628 aa32.22■■■□□ 2.75
ATPAF2-201ENST00000444058 ERCC6L2Q5T890 1561 aa32.21■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms