RNA–Protein interactions for RNA: ENST00000443981.5

PTPRN-207, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 5

Gene PTPRN, Length 1,051 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-207ENST00000443981 NISCHQ9Y2I1 1504 aa29.15■■■□□ 2.26
PTPRN-207ENST00000443981 CCDC180Q9P1Z9 1646 aa26.07■■□□□ 1.76
PTPRN-207ENST00000443981 ABCC9O60706 1549 aa25.64■■□□□ 1.7
PTPRN-207ENST00000443981 RB1CC1Q8TDY2 1594 aa24.63■■□□□ 1.53
PTPRN-207ENST00000443981 NACADO15069 1562 aa24.55■■□□□ 1.52
PTPRN-207ENST00000443981 DCAF8L2P0C7V8 631 aa24.52■■□□□ 1.52
PTPRN-207ENST00000443981 MYO15BQ96JP2 1530 aa24.32■■□□□ 1.48
PTPRN-207ENST00000443981 ZCCHC6Q5VYS8 1495 aaKnown RBP24.23■■□□□ 1.47
PTPRN-207ENST00000443981 DCAF1Q9Y4B6 1507 aa24.14■■□□□ 1.45
PTPRN-207ENST00000443981 UNC13AQ9UPW8 1703 aa24.08■■□□□ 1.45
PTPRN-207ENST00000443981 PABPN1Q86U42 306 aaKnown RBP eCLIP23.91■■□□□ 1.42
PTPRN-207ENST00000443981 BICRAQ9NZM4 1560 aa23.82■■□□□ 1.4
PTPRN-207ENST00000443981 SCRIBQ14160 1630 aa23.71■■□□□ 1.39
PTPRN-207ENST00000443981 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
PTPRN-207ENST00000443981 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
PTPRN-207ENST00000443981 EIF4G1Q04637 1599 aaKnown RBP23.24■■□□□ 1.31
PTPRN-207ENST00000443981 CC2D2AQ9P2K1 1620 aa23.21■■□□□ 1.31
PTPRN-207ENST00000443981 CECR2Q9BXF3 1484 aa23.07■■□□□ 1.28
PTPRN-207ENST00000443981 SMARCA4P51532 1647 aa22.68■■□□□ 1.22
PTPRN-207ENST00000443981 BAZ1AQ9NRL2 1556 aaPredicted RBP22.65■■□□□ 1.22
PTPRN-207ENST00000443981 NCAPD3P42695 1498 aa22.62■■□□□ 1.21
PTPRN-207ENST00000443981 SMARCA2P51531 1590 aa22.6■■□□□ 1.21
PTPRN-207ENST00000443981 ATAD2BQ9ULI0 1458 aa22.59■■□□□ 1.21
PTPRN-207ENST00000443981 HMGXB3Q12766 1538 aa22.5■■□□□ 1.19
PTPRN-207ENST00000443981 PEG3Q9GZU2 1588 aa22.46■■□□□ 1.19
PTPRN-207ENST00000443981 MROH2BQ7Z745 1585 aa22.44■■□□□ 1.18
PTPRN-207ENST00000443981 BAZ1BQ9UIG0 1483 aaKnown RBP22.42■■□□□ 1.18
PTPRN-207ENST00000443981 WIZO95785 1651 aa22.23■■□□□ 1.15
PTPRN-207ENST00000443981 ERCC6Q03468 1493 aa22.16■■□□□ 1.14
PTPRN-207ENST00000443981 RSF1Q96T23 1441 aaPredicted RBP22.11■■□□□ 1.13
PTPRN-207ENST00000443981 NESP48681 1621 aa22.1■■□□□ 1.13
PTPRN-207ENST00000443981 LAMC3Q9Y6N6 1575 aa22.1■■□□□ 1.13
PTPRN-207ENST00000443981 CUX2O14529 1486 aa22■■□□□ 1.11
PTPRN-207ENST00000443981 TOP2AP11388 1531 aaKnown RBP21.97■■□□□ 1.11
PTPRN-207ENST00000443981 PDS5BQ9NTI5 1447 aa21.97■■□□□ 1.11
PTPRN-207ENST00000443981 CADPSQ9ULU8 1353 aa21.96■■□□□ 1.11
PTPRN-207ENST00000443981 KIF21AQ7Z4S6 1674 aa21.9■■□□□ 1.1
PTPRN-207ENST00000443981 THOC2Q8NI27 1593 aaKnown RBP21.83■■□□□ 1.09
PTPRN-207ENST00000443981 CFTRP13569 1480 aa21.77■■□□□ 1.07
PTPRN-207ENST00000443981 DNAJC5Q9H3Z4 198 aa21.73■■□□□ 1.07
PTPRN-207ENST00000443981 CEP164Q9UPV0 1460 aa21.71■■□□□ 1.07
PTPRN-207ENST00000443981 CCDC88BA6NC98 1476 aa21.71■■□□□ 1.07
PTPRN-207ENST00000443981 FANCD2Q9BXW9 1451 aa21.71■■□□□ 1.07
PTPRN-207ENST00000443981 MRC2Q9UBG0 1479 aa21.71■■□□□ 1.07
PTPRN-207ENST00000443981 PRDM2Q13029 1718 aa21.69■■□□□ 1.06
PTPRN-207ENST00000443981 WDR62O43379 1518 aa21.63■■□□□ 1.05
PTPRN-207ENST00000443981 URB2Q14146 1524 aaKnown RBP21.46■■□□□ 1.03
PTPRN-207ENST00000443981 SUPT5HO00267 1087 aaKnown RBP21.46■■□□□ 1.03
PTPRN-207ENST00000443981 ABCC8Q09428 1581 aa21.4■■□□□ 1.02
PTPRN-207ENST00000443981 TOPBP1Q92547 1522 aa21.33■■□□□ 1
PTPRN-207ENST00000443981 DNMBPQ6XZF7 1577 aa21.31■■□□□ 1
PTPRN-207ENST00000443981 IFT140Q96RY7 1462 aa21.26■□□□□ 0.99
PTPRN-207ENST00000443981 ZNF608Q9ULD9 1512 aaPredicted RBP21.13■□□□□ 0.97
PTPRN-207ENST00000443981 POLA1P09884 1462 aaPredicted RBP21.12■□□□□ 0.97
PTPRN-207ENST00000443981 TARBP1Q13395 1621 aaKnown RBP21.11■□□□□ 0.97
PTPRN-207ENST00000443981 OSCARQ8IYS5 282 aa21.08■□□□□ 0.97
PTPRN-207ENST00000443981 EIF4G3O43432 1585 aaKnown RBP21.07■□□□□ 0.96
PTPRN-207ENST00000443981 SOGA1O94964 1423 aa21.07■□□□□ 0.96
PTPRN-207ENST00000443981 CUX1P39880 1505 aa21.06■□□□□ 0.96
PTPRN-207ENST00000443981 FGD5Q6ZNL6 1462 aa21.05■□□□□ 0.96
PTPRN-207ENST00000443981 RAD54L2Q9Y4B4 1467 aa21.02■□□□□ 0.96
PTPRN-207ENST00000443981 AQRO60306 1485 aaKnown RBP eCLIP21.01■□□□□ 0.95
PTPRN-207ENST00000443981 WDR97A6NE52 1622 aa20.99■□□□□ 0.95
PTPRN-207ENST00000443981 TDRD9Q8NDG6 1382 aaKnown RBP20.95■□□□□ 0.94
PTPRN-207ENST00000443981 WRNQ14191 1432 aaPredicted RBP eCLIP20.89■□□□□ 0.94
PTPRN-207ENST00000443981 CHD1O14646 1710 aa20.89■□□□□ 0.93
PTPRN-207ENST00000443981 BIVM-ERCC5R4GMW8 1640 aa20.89■□□□□ 0.93
PTPRN-207ENST00000443981 TOP2BQ02880 1626 aa20.87■□□□□ 0.93
PTPRN-207ENST00000443981 FBLN2P98095 1184 aa20.86■□□□□ 0.93
PTPRN-207ENST00000443981 ABCA10Q8WWZ4 1543 aa20.85■□□□□ 0.93
PTPRN-207ENST00000443981 GRIN2BQ13224 1484 aa20.84■□□□□ 0.93
PTPRN-207ENST00000443981 GAPVD1Q14C86 1478 aa20.82■□□□□ 0.92
PTPRN-207ENST00000443981 PBRM1Q86U86 1689 aa20.82■□□□□ 0.92
PTPRN-207ENST00000443981 MAGI1Q96QZ7 1491 aaPredicted RBP20.81■□□□□ 0.92
PTPRN-207ENST00000443981 SYNJ1O43426 1573 aa20.81■□□□□ 0.92
PTPRN-207ENST00000443981 SNAPC4Q5SXM2 1469 aa20.81■□□□□ 0.92
PTPRN-207ENST00000443981 CHMP7Q8WUX9 453 aaPredicted RBP20.78■□□□□ 0.92
PTPRN-207ENST00000443981 ABCA5Q8WWZ7 1642 aa20.77■□□□□ 0.92
PTPRN-207ENST00000443981 TRIM41Q8WV44 630 aa20.76■□□□□ 0.91
PTPRN-207ENST00000443981 SYNJ2O15056 1496 aa20.73■□□□□ 0.91
PTPRN-207ENST00000443981 RIMBP3CA6NJZ7 1639 aa20.72■□□□□ 0.91
PTPRN-207ENST00000443981 RIMBP3BA6NNM3 1639 aa20.72■□□□□ 0.91
PTPRN-207ENST00000443981 RIMBP3Q9UFD9 1639 aa20.72■□□□□ 0.91
PTPRN-207ENST00000443981 ARHGEF11O15085 1522 aa20.68■□□□□ 0.9
PTPRN-207ENST00000443981 ERICH3Q5RHP9 1530 aa20.62■□□□□ 0.89
PTPRN-207ENST00000443981 CLASP1Q7Z460 1538 aa20.6■□□□□ 0.89
PTPRN-207ENST00000443981 ADAMTS12P58397 1594 aa20.59■□□□□ 0.89
PTPRN-207ENST00000443981 FHAD1B1AJZ9 1412 aa20.57■□□□□ 0.88
PTPRN-207ENST00000443981 GRIN2AQ12879 1464 aa20.56■□□□□ 0.88
PTPRN-207ENST00000443981 CYB5RLQ6IPT4 315 aa20.53■□□□□ 0.88
PTPRN-207ENST00000443981 KIF27Q86VH2 1401 aa20.5■□□□□ 0.87
PTPRN-207ENST00000443981 ARAP1Q96P48 1450 aa20.47■□□□□ 0.87
PTPRN-207ENST00000443981 NUP160Q12769 1436 aa20.46■□□□□ 0.87
PTPRN-207ENST00000443981 CEP170Q5SW79 1584 aa20.44■□□□□ 0.86
PTPRN-207ENST00000443981 CUL7Q14999 1698 aa20.42■□□□□ 0.86
PTPRN-207ENST00000443981 IGF1RP08069 1367 aa20.4■□□□□ 0.86
PTPRN-207ENST00000443981 SHROOM2Q13796 1616 aa20.35■□□□□ 0.85
PTPRN-207ENST00000443981 JPH4Q96JJ6 628 aa20.31■□□□□ 0.84
PTPRN-207ENST00000443981 CARMIL1Q5VZK9 1371 aa20.31■□□□□ 0.84
PTPRN-207ENST00000443981 RUSC2Q8N2Y8 1516 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms