RNA–Protein interactions for RNA: ENST00000443722.5

PMPCB-203, Transcript of peptidase, mitochondrial processing beta subunit, humanhuman

TSL 5

Gene PMPCB, Length 1,323 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMPCB-203ENST00000443722 NISCHQ9Y2I1 1504 aa32.69■■■□□ 2.82
PMPCB-203ENST00000443722 CCDC180Q9P1Z9 1646 aa29.07■■■□□ 2.24
PMPCB-203ENST00000443722 ABCC9O60706 1549 aa29.04■■■□□ 2.24
PMPCB-203ENST00000443722 DCAF8L2P0C7V8 631 aa27.67■■■□□ 2.02
PMPCB-203ENST00000443722 RB1CC1Q8TDY2 1594 aa27.6■■■□□ 2.01
PMPCB-203ENST00000443722 NACADO15069 1562 aa27.47■■□□□ 1.99
PMPCB-203ENST00000443722 PABPN1Q86U42 306 aaKnown RBP eCLIP27.16■■□□□ 1.94
PMPCB-203ENST00000443722 ZCCHC6Q5VYS8 1495 aaKnown RBP27.14■■□□□ 1.94
PMPCB-203ENST00000443722 MYO15BQ96JP2 1530 aa27.13■■□□□ 1.93
PMPCB-203ENST00000443722 DNAJC5BQ9UF47 199 aa27.05■■□□□ 1.92
PMPCB-203ENST00000443722 UNC13AQ9UPW8 1703 aa26.96■■□□□ 1.91
PMPCB-203ENST00000443722 DCAF1Q9Y4B6 1507 aa26.92■■□□□ 1.9
PMPCB-203ENST00000443722 BICRAQ9NZM4 1560 aa26.84■■□□□ 1.89
PMPCB-203ENST00000443722 SCRIBQ14160 1630 aa26.68■■□□□ 1.86
PMPCB-203ENST00000443722 SHROOM4Q9ULL8 1493 aa26.36■■□□□ 1.81
PMPCB-203ENST00000443722 EIF4G1Q04637 1599 aaKnown RBP26.16■■□□□ 1.78
PMPCB-203ENST00000443722 CC2D2AQ9P2K1 1620 aa26.15■■□□□ 1.78
PMPCB-203ENST00000443722 CECR2Q9BXF3 1484 aa26.07■■□□□ 1.76
PMPCB-203ENST00000443722 SMARCA4P51532 1647 aa25.41■■□□□ 1.66
PMPCB-203ENST00000443722 NCAPD3P42695 1498 aa25.41■■□□□ 1.66
PMPCB-203ENST00000443722 ATAD2BQ9ULI0 1458 aa25.41■■□□□ 1.66
PMPCB-203ENST00000443722 BAZ1AQ9NRL2 1556 aaPredicted RBP25.31■■□□□ 1.64
PMPCB-203ENST00000443722 SMARCA2P51531 1590 aa25.29■■□□□ 1.64
PMPCB-203ENST00000443722 MROH2BQ7Z745 1585 aa25.25■■□□□ 1.63
PMPCB-203ENST00000443722 HMGXB3Q12766 1538 aa25.2■■□□□ 1.62
PMPCB-203ENST00000443722 BAZ1BQ9UIG0 1483 aaKnown RBP25.17■■□□□ 1.62
PMPCB-203ENST00000443722 PEG3Q9GZU2 1588 aa25.11■■□□□ 1.61
PMPCB-203ENST00000443722 NESP48681 1621 aa25.02■■□□□ 1.6
PMPCB-203ENST00000443722 ERCC6Q03468 1493 aa25■■□□□ 1.59
PMPCB-203ENST00000443722 WIZO95785 1651 aa24.93■■□□□ 1.58
PMPCB-203ENST00000443722 RSF1Q96T23 1441 aaPredicted RBP24.83■■□□□ 1.57
PMPCB-203ENST00000443722 CUX2O14529 1486 aa24.75■■□□□ 1.55
PMPCB-203ENST00000443722 LAMC3Q9Y6N6 1575 aa24.74■■□□□ 1.55
PMPCB-203ENST00000443722 CADPSQ9ULU8 1353 aa24.69■■□□□ 1.54
PMPCB-203ENST00000443722 PDS5BQ9NTI5 1447 aa24.64■■□□□ 1.54
PMPCB-203ENST00000443722 KIF21AQ7Z4S6 1674 aa24.6■■□□□ 1.53
PMPCB-203ENST00000443722 TOP2AP11388 1531 aaKnown RBP24.59■■□□□ 1.53
PMPCB-203ENST00000443722 THOC2Q8NI27 1593 aaKnown RBP24.59■■□□□ 1.53
PMPCB-203ENST00000443722 DNAJC5Q9H3Z4 198 aa24.52■■□□□ 1.52
PMPCB-203ENST00000443722 CFTRP13569 1480 aa24.45■■□□□ 1.5
PMPCB-203ENST00000443722 MRC2Q9UBG0 1479 aa24.42■■□□□ 1.5
PMPCB-203ENST00000443722 FANCD2Q9BXW9 1451 aa24.41■■□□□ 1.5
PMPCB-203ENST00000443722 CEP164Q9UPV0 1460 aa24.39■■□□□ 1.49
PMPCB-203ENST00000443722 CCDC88BA6NC98 1476 aa24.38■■□□□ 1.49
PMPCB-203ENST00000443722 WDR62O43379 1518 aa24.32■■□□□ 1.48
PMPCB-203ENST00000443722 URB2Q14146 1524 aaKnown RBP24.21■■□□□ 1.47
PMPCB-203ENST00000443722 SUPT5HO00267 1087 aaKnown RBP24.09■■□□□ 1.45
PMPCB-203ENST00000443722 PRDM2Q13029 1718 aa24.07■■□□□ 1.44
PMPCB-203ENST00000443722 TOPBP1Q92547 1522 aa23.97■■□□□ 1.43
PMPCB-203ENST00000443722 ZNF608Q9ULD9 1512 aaPredicted RBP23.9■■□□□ 1.42
PMPCB-203ENST00000443722 IFT140Q96RY7 1462 aa23.87■■□□□ 1.41
PMPCB-203ENST00000443722 DNMBPQ6XZF7 1577 aa23.87■■□□□ 1.41
PMPCB-203ENST00000443722 ABCC8Q09428 1581 aa23.84■■□□□ 1.41
PMPCB-203ENST00000443722 OSCARQ8IYS5 282 aa23.77■■□□□ 1.4
PMPCB-203ENST00000443722 POLA1P09884 1462 aaPredicted RBP23.76■■□□□ 1.39
PMPCB-203ENST00000443722 AQRO60306 1485 aaKnown RBP eCLIP23.73■■□□□ 1.393e-6■■■□□ 17
PMPCB-203ENST00000443722 RAD54L2Q9Y4B4 1467 aa23.73■■□□□ 1.39
PMPCB-203ENST00000443722 TARBP1Q13395 1621 aaKnown RBP23.71■■□□□ 1.39
PMPCB-203ENST00000443722 EIF4G3O43432 1585 aaKnown RBP23.7■■□□□ 1.38
PMPCB-203ENST00000443722 CUX1P39880 1505 aa23.69■■□□□ 1.38
PMPCB-203ENST00000443722 TRIM41Q8WV44 630 aa23.69■■□□□ 1.38
PMPCB-203ENST00000443722 SOGA1O94964 1423 aa23.68■■□□□ 1.38
PMPCB-203ENST00000443722 FGD5Q6ZNL6 1462 aa23.66■■□□□ 1.38
PMPCB-203ENST00000443722 TDRD9Q8NDG6 1382 aaKnown RBP23.65■■□□□ 1.38
PMPCB-203ENST00000443722 FBLN2P98095 1184 aa23.58■■□□□ 1.36
PMPCB-203ENST00000443722 SNAPC4Q5SXM2 1469 aa23.46■■□□□ 1.35
PMPCB-203ENST00000443722 CHD1O14646 1710 aa23.44■■□□□ 1.34
PMPCB-203ENST00000443722 WRNQ14191 1432 aaPredicted RBP eCLIP23.4■■□□□ 1.34
PMPCB-203ENST00000443722 GRIN2BQ13224 1484 aa23.39■■□□□ 1.33
PMPCB-203ENST00000443722 CHMP7Q8WUX9 453 aaPredicted RBP23.38■■□□□ 1.33
PMPCB-203ENST00000443722 RIMBP3CA6NJZ7 1639 aa23.38■■□□□ 1.33
PMPCB-203ENST00000443722 RIMBP3BA6NNM3 1639 aa23.38■■□□□ 1.33
PMPCB-203ENST00000443722 RIMBP3Q9UFD9 1639 aa23.38■■□□□ 1.33
PMPCB-203ENST00000443722 GAPVD1Q14C86 1478 aa23.37■■□□□ 1.33
PMPCB-203ENST00000443722 ARHGEF11O15085 1522 aa23.37■■□□□ 1.33
PMPCB-203ENST00000443722 SYNJ1O43426 1573 aa23.37■■□□□ 1.33
PMPCB-203ENST00000443722 WDR97A6NE52 1622 aa23.37■■□□□ 1.33
PMPCB-203ENST00000443722 ABCA10Q8WWZ4 1543 aa23.36■■□□□ 1.33
PMPCB-203ENST00000443722 MAGI1Q96QZ7 1491 aaPredicted RBP23.32■■□□□ 1.32
PMPCB-203ENST00000443722 TOP2BQ02880 1626 aa23.32■■□□□ 1.32
PMPCB-203ENST00000443722 BIVM-ERCC5R4GMW8 1640 aa23.29■■□□□ 1.32
PMPCB-203ENST00000443722 CYB5RLQ6IPT4 315 aa23.29■■□□□ 1.32
PMPCB-203ENST00000443722 ABCA5Q8WWZ7 1642 aa23.28■■□□□ 1.32
PMPCB-203ENST00000443722 SYNJ2O15056 1496 aa23.27■■□□□ 1.32
PMPCB-203ENST00000443722 PBRM1Q86U86 1689 aa23.26■■□□□ 1.31
PMPCB-203ENST00000443722 CLASP1Q7Z460 1538 aa23.19■■□□□ 1.3
PMPCB-203ENST00000443722 ARAP1Q96P48 1450 aa23.17■■□□□ 1.3
PMPCB-203ENST00000443722 GRIN2AQ12879 1464 aa23.11■■□□□ 1.29
PMPCB-203ENST00000443722 ADAMTS12P58397 1594 aa23.1■■□□□ 1.29
PMPCB-203ENST00000443722 FHAD1B1AJZ9 1412 aa23.07■■□□□ 1.28
PMPCB-203ENST00000443722 ERICH3Q5RHP9 1530 aa23.04■■□□□ 1.28
PMPCB-203ENST00000443722 CEP170Q5SW79 1584 aa23.01■■□□□ 1.27
PMPCB-203ENST00000443722 NUP160Q12769 1436 aa23■■□□□ 1.27
PMPCB-203ENST00000443722 ERCC6L2Q5T890 1561 aa22.96■■□□□ 1.27
PMPCB-203ENST00000443722 TRHP20396 242 aaPredicted RBP22.93■■□□□ 1.26
PMPCB-203ENST00000443722 IGF1RP08069 1367 aa22.92■■□□□ 1.26
PMPCB-203ENST00000443722 KIF27Q86VH2 1401 aa22.92■■□□□ 1.26
PMPCB-203ENST00000443722 JPH4Q96JJ6 628 aa22.83■■□□□ 1.25
PMPCB-203ENST00000443722 PRG4Q92954 1404 aaPredicted RBP22.82■■□□□ 1.24
PMPCB-203ENST00000443722 SHROOM2Q13796 1616 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms