RNA–Protein interactions for RNA: ENST00000443574.1

HLA-DQB1-206, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 309 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-206ENST00000443574 NISCHQ9Y2I1 1504 aa25.12■■□□□ 1.61
HLA-DQB1-206ENST00000443574 AEBP2Q6ZN18 517 aaPredicted RBP22.66■■□□□ 1.22
HLA-DQB1-206ENST00000443574 CCDC180Q9P1Z9 1646 aa22.51■■□□□ 1.19
HLA-DQB1-206ENST00000443574 CHIC1Q5VXU3 224 aa22.06■■□□□ 1.12
HLA-DQB1-206ENST00000443574 ABCC9O60706 1549 aa21.82■■□□□ 1.08
HLA-DQB1-206ENST00000443574 RB1CC1Q8TDY2 1594 aa21.12■□□□□ 0.97
HLA-DQB1-206ENST00000443574 NACADO15069 1562 aa21.07■□□□□ 0.96
HLA-DQB1-206ENST00000443574 ZCCHC6Q5VYS8 1495 aaKnown RBP20.95■□□□□ 0.94
HLA-DQB1-206ENST00000443574 MYO15BQ96JP2 1530 aa20.94■□□□□ 0.94
HLA-DQB1-206ENST00000443574 DCAF8L2P0C7V8 631 aa20.87■□□□□ 0.93
HLA-DQB1-206ENST00000443574 DCAF1Q9Y4B6 1507 aa20.84■□□□□ 0.93
HLA-DQB1-206ENST00000443574 UNC13AQ9UPW8 1703 aa20.68■□□□□ 0.9
HLA-DQB1-206ENST00000443574 SCRIBQ14160 1630 aa20.43■□□□□ 0.86
HLA-DQB1-206ENST00000443574 BICRAQ9NZM4 1560 aa20.38■□□□□ 0.85
HLA-DQB1-206ENST00000443574 SHROOM4Q9ULL8 1493 aa20.3■□□□□ 0.84
HLA-DQB1-206ENST00000443574 PABPN1Q86U42 306 aaKnown RBP eCLIP20.27■□□□□ 0.84
HLA-DQB1-206ENST00000443574 EIF4G1Q04637 1599 aaKnown RBP19.89■□□□□ 0.77
HLA-DQB1-206ENST00000443574 DNAJC5BQ9UF47 199 aa19.81■□□□□ 0.76
HLA-DQB1-206ENST00000443574 CC2D2AQ9P2K1 1620 aa19.8■□□□□ 0.76
HLA-DQB1-206ENST00000443574 CECR2Q9BXF3 1484 aa19.62■□□□□ 0.73
HLA-DQB1-206ENST00000443574 SMARCA4P51532 1647 aa19.56■□□□□ 0.72
HLA-DQB1-206ENST00000443574 BAZ1AQ9NRL2 1556 aaPredicted RBP19.54■□□□□ 0.72
HLA-DQB1-206ENST00000443574 SMARCA2P51531 1590 aa19.44■□□□□ 0.7
HLA-DQB1-206ENST00000443574 PHF23Q9BUL5 403 aaPredicted RBP19.37■□□□□ 0.69
HLA-DQB1-206ENST00000443574 PEG3Q9GZU2 1588 aa19.36■□□□□ 0.69
HLA-DQB1-206ENST00000443574 HMGXB3Q12766 1538 aa19.36■□□□□ 0.69
HLA-DQB1-206ENST00000443574 ATAD2BQ9ULI0 1458 aa19.35■□□□□ 0.69
HLA-DQB1-206ENST00000443574 NCAPD3P42695 1498 aa19.35■□□□□ 0.69
HLA-DQB1-206ENST00000443574 MROH2BQ7Z745 1585 aa19.32■□□□□ 0.68
HLA-DQB1-206ENST00000443574 SENP3Q9H4L4 574 aaPredicted RBP19.27■□□□□ 0.68
HLA-DQB1-206ENST00000443574 BAZ1BQ9UIG0 1483 aaKnown RBP19.27■□□□□ 0.67
HLA-DQB1-206ENST00000443574 WIZO95785 1651 aa19.18■□□□□ 0.66
HLA-DQB1-206ENST00000443574 RSF1Q96T23 1441 aaPredicted RBP19.07■□□□□ 0.64
HLA-DQB1-206ENST00000443574 TOP2AP11388 1531 aaKnown RBP19■□□□□ 0.63
HLA-DQB1-206ENST00000443574 LAMC3Q9Y6N6 1575 aa18.96■□□□□ 0.63
HLA-DQB1-206ENST00000443574 ERCC6Q03468 1493 aa18.89■□□□□ 0.61
HLA-DQB1-206ENST00000443574 NESP48681 1621 aa18.85■□□□□ 0.61
HLA-DQB1-206ENST00000443574 PRDM2Q13029 1718 aa18.8■□□□□ 0.6
HLA-DQB1-206ENST00000443574 KIF21AQ7Z4S6 1674 aa18.79■□□□□ 0.6
HLA-DQB1-206ENST00000443574 CADPSQ9ULU8 1353 aa18.77■□□□□ 0.6
HLA-DQB1-206ENST00000443574 PDS5BQ9NTI5 1447 aa18.75■□□□□ 0.59
HLA-DQB1-206ENST00000443574 THOC2Q8NI27 1593 aaKnown RBP18.7■□□□□ 0.58
HLA-DQB1-206ENST00000443574 CFTRP13569 1480 aa18.69■□□□□ 0.58
HLA-DQB1-206ENST00000443574 CUX2O14529 1486 aa18.68■□□□□ 0.58
HLA-DQB1-206ENST00000443574 CCDC88BA6NC98 1476 aa18.67■□□□□ 0.58
HLA-DQB1-206ENST00000443574 CEP164Q9UPV0 1460 aa18.63■□□□□ 0.57
HLA-DQB1-206ENST00000443574 FANCD2Q9BXW9 1451 aa18.6■□□□□ 0.57
HLA-DQB1-206ENST00000443574 MRC2Q9UBG0 1479 aa18.58■□□□□ 0.56
HLA-DQB1-206ENST00000443574 SUPT5HO00267 1087 aaKnown RBP18.55■□□□□ 0.56
HLA-DQB1-206ENST00000443574 WDR62O43379 1518 aa18.54■□□□□ 0.56
HLA-DQB1-206ENST00000443574 URB2Q14146 1524 aaKnown RBP18.39■□□□□ 0.53
HLA-DQB1-206ENST00000443574 ABCC8Q09428 1581 aa18.37■□□□□ 0.53
HLA-DQB1-206ENST00000443574 DNMBPQ6XZF7 1577 aa18.35■□□□□ 0.53
HLA-DQB1-206ENST00000443574 TOPBP1Q92547 1522 aa18.3■□□□□ 0.52
HLA-DQB1-206ENST00000443574 IFT140Q96RY7 1462 aa18.2■□□□□ 0.5
HLA-DQB1-206ENST00000443574 CUX1P39880 1505 aa18.15■□□□□ 0.5
HLA-DQB1-206ENST00000443574 POLA1P09884 1462 aaPredicted RBP18.14■□□□□ 0.5
HLA-DQB1-206ENST00000443574 TARBP1Q13395 1621 aaKnown RBP18.13■□□□□ 0.49
HLA-DQB1-206ENST00000443574 EIF4G3O43432 1585 aaKnown RBP18.13■□□□□ 0.49
HLA-DQB1-206ENST00000443574 FGD5Q6ZNL6 1462 aa18.11■□□□□ 0.49
HLA-DQB1-206ENST00000443574 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
HLA-DQB1-206ENST00000443574 WDR97A6NE52 1622 aa18.1■□□□□ 0.49
HLA-DQB1-206ENST00000443574 TOP2BQ02880 1626 aa18.07■□□□□ 0.48
HLA-DQB1-206ENST00000443574 WRNQ14191 1432 aaPredicted RBP eCLIP18.05■□□□□ 0.48
HLA-DQB1-206ENST00000443574 ZNF608Q9ULD9 1512 aaPredicted RBP18.04■□□□□ 0.48
HLA-DQB1-206ENST00000443574 SOGA1O94964 1423 aa18.03■□□□□ 0.48
HLA-DQB1-206ENST00000443574 SYNJ1O43426 1573 aa18.03■□□□□ 0.48
HLA-DQB1-206ENST00000443574 RAD54L2Q9Y4B4 1467 aa18.01■□□□□ 0.47
HLA-DQB1-206ENST00000443574 PBRM1Q86U86 1689 aa17.97■□□□□ 0.47
HLA-DQB1-206ENST00000443574 DNAJC5Q9H3Z4 198 aa17.94■□□□□ 0.46
HLA-DQB1-206ENST00000443574 ABCA10Q8WWZ4 1543 aa17.93■□□□□ 0.46
HLA-DQB1-206ENST00000443574 ABCA5Q8WWZ7 1642 aa17.93■□□□□ 0.46
HLA-DQB1-206ENST00000443574 AQRO60306 1485 aaKnown RBP eCLIP17.93■□□□□ 0.46
HLA-DQB1-206ENST00000443574 CHD1O14646 1710 aa17.92■□□□□ 0.46
HLA-DQB1-206ENST00000443574 TDRD9Q8NDG6 1382 aaKnown RBP17.89■□□□□ 0.45
HLA-DQB1-206ENST00000443574 GRIN2BQ13224 1484 aa17.88■□□□□ 0.45
HLA-DQB1-206ENST00000443574 PLPPR3Q6T4P5 718 aa17.87■□□□□ 0.45
HLA-DQB1-206ENST00000443574 GAPVD1Q14C86 1478 aa17.87■□□□□ 0.45
HLA-DQB1-206ENST00000443574 MAGI1Q96QZ7 1491 aaPredicted RBP17.87■□□□□ 0.45
HLA-DQB1-206ENST00000443574 FOXD1Q16676 465 aa17.85■□□□□ 0.45
HLA-DQB1-206ENST00000443574 SNAPC4Q5SXM2 1469 aa17.84■□□□□ 0.45
HLA-DQB1-206ENST00000443574 OSCARQ8IYS5 282 aa17.79■□□□□ 0.44
HLA-DQB1-206ENST00000443574 SYNJ2O15056 1496 aa17.77■□□□□ 0.44
HLA-DQB1-206ENST00000443574 ERICH3Q5RHP9 1530 aa17.77■□□□□ 0.43
HLA-DQB1-206ENST00000443574 ADAMTS12P58397 1594 aa17.76■□□□□ 0.43
HLA-DQB1-206ENST00000443574 FBLN2P98095 1184 aa17.72■□□□□ 0.43
HLA-DQB1-206ENST00000443574 CUL7Q14999 1698 aa17.69■□□□□ 0.42
HLA-DQB1-206ENST00000443574 CHMP7Q8WUX9 453 aaPredicted RBP17.69■□□□□ 0.42
HLA-DQB1-206ENST00000443574 KIF27Q86VH2 1401 aa17.69■□□□□ 0.42
HLA-DQB1-206ENST00000443574 FHAD1B1AJZ9 1412 aa17.65■□□□□ 0.42
HLA-DQB1-206ENST00000443574 GRIN2AQ12879 1464 aa17.65■□□□□ 0.42
HLA-DQB1-206ENST00000443574 CLASP1Q7Z460 1538 aa17.65■□□□□ 0.42
HLA-DQB1-206ENST00000443574 RIMBP3CA6NJZ7 1639 aa17.62■□□□□ 0.41
HLA-DQB1-206ENST00000443574 RIMBP3BA6NNM3 1639 aa17.62■□□□□ 0.41
HLA-DQB1-206ENST00000443574 RIMBP3Q9UFD9 1639 aa17.62■□□□□ 0.41
HLA-DQB1-206ENST00000443574 ARHGEF11O15085 1522 aa17.6■□□□□ 0.41
HLA-DQB1-206ENST00000443574 TRIM41Q8WV44 630 aa17.57■□□□□ 0.4
HLA-DQB1-206ENST00000443574 CEP170Q5SW79 1584 aa17.57■□□□□ 0.4
HLA-DQB1-206ENST00000443574 NUP160Q12769 1436 aa17.54■□□□□ 0.4
HLA-DQB1-206ENST00000443574 RUSC2Q8N2Y8 1516 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms