RNA–Protein interactions for RNA: ENST00000443563.5

HDAC6-211, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-211ENST00000443563 NISCHQ9Y2I1 1504 aa26.12■■□□□ 1.77
HDAC6-211ENST00000443563 CCDC180Q9P1Z9 1646 aa23.26■■□□□ 1.31
HDAC6-211ENST00000443563 ABCC9O60706 1549 aa22.57■■□□□ 1.2
HDAC6-211ENST00000443563 RB1CC1Q8TDY2 1594 aa21.83■■□□□ 1.09
HDAC6-211ENST00000443563 NACADO15069 1562 aa21.82■■□□□ 1.08
HDAC6-211ENST00000443563 ZCCHC6Q5VYS8 1495 aaKnown RBP21.77■■□□□ 1.07
HDAC6-211ENST00000443563 DCAF8L2P0C7V8 631 aa21.75■■□□□ 1.07
HDAC6-211ENST00000443563 MYO15BQ96JP2 1530 aa21.72■■□□□ 1.07
HDAC6-211ENST00000443563 DCAF1Q9Y4B6 1507 aa21.66■■□□□ 1.06
HDAC6-211ENST00000443563 UNC13AQ9UPW8 1703 aa21.32■■□□□ 1
HDAC6-211ENST00000443563 SCRIBQ14160 1630 aa21.15■□□□□ 0.98
HDAC6-211ENST00000443563 BICRAQ9NZM4 1560 aa21.1■□□□□ 0.97
HDAC6-211ENST00000443563 PABPN1Q86U42 306 aaKnown RBP eCLIP21.07■□□□□ 0.96
HDAC6-211ENST00000443563 SHROOM4Q9ULL8 1493 aa20.98■□□□□ 0.95
HDAC6-211ENST00000443563 EIF4G1Q04637 1599 aaKnown RBP20.56■□□□□ 0.88
HDAC6-211ENST00000443563 DNAJC5BQ9UF47 199 aa20.56■□□□□ 0.88
HDAC6-211ENST00000443563 CC2D2AQ9P2K1 1620 aa20.45■□□□□ 0.87
HDAC6-211ENST00000443563 CECR2Q9BXF3 1484 aa20.29■□□□□ 0.84
HDAC6-211ENST00000443563 BAZ1AQ9NRL2 1556 aaPredicted RBP20.28■□□□□ 0.84
HDAC6-211ENST00000443563 SMARCA4P51532 1647 aa20.27■□□□□ 0.83
HDAC6-211ENST00000443563 SMARCA2P51531 1590 aa20.14■□□□□ 0.81
HDAC6-211ENST00000443563 NCAPD3P42695 1498 aa20.1■□□□□ 0.81
HDAC6-211ENST00000443563 ATAD2BQ9ULI0 1458 aa20.1■□□□□ 0.81
HDAC6-211ENST00000443563 MROH2BQ7Z745 1585 aa20.09■□□□□ 0.81
HDAC6-211ENST00000443563 PEG3Q9GZU2 1588 aa20.08■□□□□ 0.8
HDAC6-211ENST00000443563 HMGXB3Q12766 1538 aa20.04■□□□□ 0.8
HDAC6-211ENST00000443563 BAZ1BQ9UIG0 1483 aaKnown RBP19.98■□□□□ 0.79
HDAC6-211ENST00000443563 WIZO95785 1651 aa19.91■□□□□ 0.78
HDAC6-211ENST00000443563 RSF1Q96T23 1441 aaPredicted RBP19.9■□□□□ 0.78
HDAC6-211ENST00000443563 TOP2AP11388 1531 aaKnown RBP19.72■□□□□ 0.75
HDAC6-211ENST00000443563 LAMC3Q9Y6N6 1575 aa19.61■□□□□ 0.73
HDAC6-211ENST00000443563 NESP48681 1621 aa19.54■□□□□ 0.72
HDAC6-211ENST00000443563 CADPSQ9ULU8 1353 aa19.51■□□□□ 0.71
HDAC6-211ENST00000443563 ERCC6Q03468 1493 aa19.5■□□□□ 0.71
HDAC6-211ENST00000443563 CCDC88BA6NC98 1476 aa19.46■□□□□ 0.71
HDAC6-211ENST00000443563 PDS5BQ9NTI5 1447 aa19.45■□□□□ 0.7
HDAC6-211ENST00000443563 SUPT5HO00267 1087 aaKnown RBP19.44■□□□□ 0.7
HDAC6-211ENST00000443563 CFTRP13569 1480 aa19.41■□□□□ 0.7
HDAC6-211ENST00000443563 KIF21AQ7Z4S6 1674 aa19.38■□□□□ 0.69
HDAC6-211ENST00000443563 PRDM2Q13029 1718 aa19.37■□□□□ 0.69
HDAC6-211ENST00000443563 FANCD2Q9BXW9 1451 aa19.29■□□□□ 0.68
HDAC6-211ENST00000443563 THOC2Q8NI27 1593 aaKnown RBP19.28■□□□□ 0.68
HDAC6-211ENST00000443563 CUX2O14529 1486 aa19.28■□□□□ 0.68
HDAC6-211ENST00000443563 CEP164Q9UPV0 1460 aa19.28■□□□□ 0.68
HDAC6-211ENST00000443563 MRC2Q9UBG0 1479 aa19.22■□□□□ 0.67
HDAC6-211ENST00000443563 WDR62O43379 1518 aa19.15■□□□□ 0.66
HDAC6-211ENST00000443563 URB2Q14146 1524 aaKnown RBP19.07■□□□□ 0.64
HDAC6-211ENST00000443563 ABCC8Q09428 1581 aa19.06■□□□□ 0.64
HDAC6-211ENST00000443563 DNMBPQ6XZF7 1577 aa19■□□□□ 0.63
HDAC6-211ENST00000443563 TOPBP1Q92547 1522 aa18.99■□□□□ 0.63
HDAC6-211ENST00000443563 IFT140Q96RY7 1462 aa18.87■□□□□ 0.61
HDAC6-211ENST00000443563 CUX1P39880 1505 aa18.85■□□□□ 0.61
HDAC6-211ENST00000443563 POLA1P09884 1462 aaPredicted RBP18.82■□□□□ 0.6
HDAC6-211ENST00000443563 FGD5Q6ZNL6 1462 aa18.79■□□□□ 0.6
HDAC6-211ENST00000443563 TARBP1Q13395 1621 aaKnown RBP18.78■□□□□ 0.6
HDAC6-211ENST00000443563 WRNQ14191 1432 aaPredicted RBP eCLIP18.78■□□□□ 0.6
HDAC6-211ENST00000443563 BIVM-ERCC5R4GMW8 1640 aa18.78■□□□□ 0.6
HDAC6-211ENST00000443563 TOP2BQ02880 1626 aa18.76■□□□□ 0.59
HDAC6-211ENST00000443563 SOGA1O94964 1423 aa18.75■□□□□ 0.59
HDAC6-211ENST00000443563 SYNJ1O43426 1573 aa18.72■□□□□ 0.59
HDAC6-211ENST00000443563 WDR97A6NE52 1622 aa18.72■□□□□ 0.59
HDAC6-211ENST00000443563 ZNF608Q9ULD9 1512 aaPredicted RBP18.71■□□□□ 0.59
HDAC6-211ENST00000443563 EIF4G3O43432 1585 aaKnown RBP18.71■□□□□ 0.59
HDAC6-211ENST00000443563 RAD54L2Q9Y4B4 1467 aa18.71■□□□□ 0.59
HDAC6-211ENST00000443563 AQRO60306 1485 aaKnown RBP eCLIP18.63■□□□□ 0.571e-21■■■■■ 39.1
HDAC6-211ENST00000443563 ABCA10Q8WWZ4 1543 aa18.63■□□□□ 0.57
HDAC6-211ENST00000443563 TDRD9Q8NDG6 1382 aaKnown RBP18.6■□□□□ 0.57
HDAC6-211ENST00000443563 ABCA5Q8WWZ7 1642 aa18.56■□□□□ 0.56
HDAC6-211ENST00000443563 PBRM1Q86U86 1689 aa18.55■□□□□ 0.56
HDAC6-211ENST00000443563 GRIN2BQ13224 1484 aa18.55■□□□□ 0.56
HDAC6-211ENST00000443563 GAPVD1Q14C86 1478 aa18.55■□□□□ 0.56
HDAC6-211ENST00000443563 DNAJC5Q9H3Z4 198 aa18.53■□□□□ 0.56
HDAC6-211ENST00000443563 MAGI1Q96QZ7 1491 aaPredicted RBP18.5■□□□□ 0.55
HDAC6-211ENST00000443563 SNAPC4Q5SXM2 1469 aa18.48■□□□□ 0.55
HDAC6-211ENST00000443563 CHD1O14646 1710 aa18.47■□□□□ 0.55
HDAC6-211ENST00000443563 OSCARQ8IYS5 282 aa18.47■□□□□ 0.55
HDAC6-211ENST00000443563 ERICH3Q5RHP9 1530 aa18.44■□□□□ 0.54
HDAC6-211ENST00000443563 SYNJ2O15056 1496 aa18.41■□□□□ 0.54
HDAC6-211ENST00000443563 FBLN2P98095 1184 aa18.41■□□□□ 0.54
HDAC6-211ENST00000443563 KIF27Q86VH2 1401 aa18.4■□□□□ 0.54
HDAC6-211ENST00000443563 CHMP7Q8WUX9 453 aaPredicted RBP18.4■□□□□ 0.54
HDAC6-211ENST00000443563 TRIM41Q8WV44 630 aa18.4■□□□□ 0.54
HDAC6-211ENST00000443563 ADAMTS12P58397 1594 aa18.37■□□□□ 0.53
HDAC6-211ENST00000443563 FHAD1B1AJZ9 1412 aa18.35■□□□□ 0.53
HDAC6-211ENST00000443563 CUL7Q14999 1698 aa18.32■□□□□ 0.52
HDAC6-211ENST00000443563 GRIN2AQ12879 1464 aa18.3■□□□□ 0.52
HDAC6-211ENST00000443563 IGF1RP08069 1367 aa18.28■□□□□ 0.52
HDAC6-211ENST00000443563 CLASP1Q7Z460 1538 aa18.24■□□□□ 0.51
HDAC6-211ENST00000443563 NUP160Q12769 1436 aa18.2■□□□□ 0.5
HDAC6-211ENST00000443563 CARMIL1Q5VZK9 1371 aa18.19■□□□□ 0.5
HDAC6-211ENST00000443563 CEP170Q5SW79 1584 aa18.19■□□□□ 0.5
HDAC6-211ENST00000443563 CHIC1Q5VXU3 224 aa18.19■□□□□ 0.5
HDAC6-211ENST00000443563 RUSC2Q8N2Y8 1516 aa18.18■□□□□ 0.5
HDAC6-211ENST00000443563 RIMBP3CA6NJZ7 1639 aa18.16■□□□□ 0.5
HDAC6-211ENST00000443563 RIMBP3BA6NNM3 1639 aa18.16■□□□□ 0.5
HDAC6-211ENST00000443563 RIMBP3Q9UFD9 1639 aa18.16■□□□□ 0.5
HDAC6-211ENST00000443563 ARHGEF11O15085 1522 aa18.16■□□□□ 0.5
HDAC6-211ENST00000443563 EEA1Q15075 1411 aa18.15■□□□□ 0.5
HDAC6-211ENST00000443563 RAPGEF2Q9Y4G8 1499 aa18.12■□□□□ 0.49
HDAC6-211ENST00000443563 SHROOM2Q13796 1616 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms