RNA–Protein interactions for RNA: ENST00000443430.2

POLR2J3-202, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 2

Gene POLR2J3, Length 932 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-202ENST00000443430 NISCHQ9Y2I1 1504 aa52.77■■■■■ 6.04
POLR2J3-202ENST00000443430 ABCC9O60706 1549 aa48.02■■■■■ 5.28
POLR2J3-202ENST00000443430 CCDC180Q9P1Z9 1646 aa47.52■■■■■ 5.2
POLR2J3-202ENST00000443430 DNAJC5BQ9UF47 199 aa45.54■■■■■ 4.88
POLR2J3-202ENST00000443430 RB1CC1Q8TDY2 1594 aa45.47■■■■■ 4.87
POLR2J3-202ENST00000443430 NACADO15069 1562 aa45.07■■■■■ 4.8
POLR2J3-202ENST00000443430 DCAF8L2P0C7V8 631 aa44.76■■■■■ 4.76
POLR2J3-202ENST00000443430 PABPN1Q86U42 306 aaKnown RBP eCLIP44.66■■■■■ 4.74
POLR2J3-202ENST00000443430 UNC13AQ9UPW8 1703 aa44.49■■■■■ 4.71
POLR2J3-202ENST00000443430 MYO15BQ96JP2 1530 aa44.29■■■■■ 4.68
POLR2J3-202ENST00000443430 BICRAQ9NZM4 1560 aa44.22■■■■■ 4.67
POLR2J3-202ENST00000443430 ZCCHC6Q5VYS8 1495 aaKnown RBP43.63■■■■■ 4.57
POLR2J3-202ENST00000443430 DCAF1Q9Y4B6 1507 aa43.55■■■■■ 4.56
POLR2J3-202ENST00000443430 SHROOM4Q9ULL8 1493 aa43.51■■■■■ 4.56
POLR2J3-202ENST00000443430 CC2D2AQ9P2K1 1620 aa43.35■■■■■ 4.53
POLR2J3-202ENST00000443430 CECR2Q9BXF3 1484 aa43.31■■■■■ 4.52
POLR2J3-202ENST00000443430 SCRIBQ14160 1630 aa43.29■■■■■ 4.52
POLR2J3-202ENST00000443430 EIF4G1Q04637 1599 aaKnown RBP43.14■■■■■ 4.5
POLR2J3-202ENST00000443430 DNAJC5Q9H3Z4 198 aa42.13■■■■■ 4.33
POLR2J3-202ENST00000443430 NCAPD3P42695 1498 aa41.64■■■■■ 4.26
POLR2J3-202ENST00000443430 CUX2O14529 1486 aa41.56■■■■■ 4.24
POLR2J3-202ENST00000443430 ERCC6Q03468 1493 aa41.46■■■■■ 4.23
POLR2J3-202ENST00000443430 ATAD2BQ9ULI0 1458 aa41.44■■■■■ 4.22
POLR2J3-202ENST00000443430 SMARCA2P51531 1590 aa41.26■■■■■ 4.2
POLR2J3-202ENST00000443430 SMARCA4P51532 1647 aa41.26■■■■■ 4.19
POLR2J3-202ENST00000443430 HMGXB3Q12766 1538 aa41.24■■■■■ 4.19
POLR2J3-202ENST00000443430 NESP48681 1621 aa41.13■■■■■ 4.17
POLR2J3-202ENST00000443430 BAZ1BQ9UIG0 1483 aaKnown RBP40.98■■■■■ 4.15
POLR2J3-202ENST00000443430 BAZ1AQ9NRL2 1556 aaPredicted RBP40.97■■■■■ 4.15
POLR2J3-202ENST00000443430 PEG3Q9GZU2 1588 aa40.86■■■■■ 4.13
POLR2J3-202ENST00000443430 THOC2Q8NI27 1593 aaKnown RBP40.78■■■■■ 4.12
POLR2J3-202ENST00000443430 LAMC3Q9Y6N6 1575 aa40.74■■■■■ 4.11
POLR2J3-202ENST00000443430 MROH2BQ7Z745 1585 aa40.67■■■■■ 4.1
POLR2J3-202ENST00000443430 KIF21AQ7Z4S6 1674 aa40.56■■■■■ 4.08
POLR2J3-202ENST00000443430 PDS5BQ9NTI5 1447 aa40.52■■■■■ 4.08
POLR2J3-202ENST00000443430 CADPSQ9ULU8 1353 aa40.35■■■■■ 4.05
POLR2J3-202ENST00000443430 MRC2Q9UBG0 1479 aa40.2■■■■■ 4.03
POLR2J3-202ENST00000443430 WIZO95785 1651 aa40.15■■■■■ 4.02
POLR2J3-202ENST00000443430 WDR62O43379 1518 aa40.12■■■■■ 4.01
POLR2J3-202ENST00000443430 TRIM41Q8WV44 630 aa40.05■■■■■ 4
POLR2J3-202ENST00000443430 CEP164Q9UPV0 1460 aa39.94■■■■□ 3.98
POLR2J3-202ENST00000443430 FANCD2Q9BXW9 1451 aa39.87■■■■□ 3.97
POLR2J3-202ENST00000443430 CFTRP13569 1480 aa39.78■■■■□ 3.96
POLR2J3-202ENST00000443430 RSF1Q96T23 1441 aaPredicted RBP39.66■■■■□ 3.94
POLR2J3-202ENST00000443430 OSCARQ8IYS5 282 aa39.62■■■■□ 3.93
POLR2J3-202ENST00000443430 TOP2AP11388 1531 aaKnown RBP39.59■■■■□ 3.93
POLR2J3-202ENST00000443430 URB2Q14146 1524 aaKnown RBP39.59■■■■□ 3.93
POLR2J3-202ENST00000443430 PRDM2Q13029 1718 aa39.31■■■■□ 3.88
POLR2J3-202ENST00000443430 ZNF608Q9ULD9 1512 aaPredicted RBP39.18■■■■□ 3.86
POLR2J3-202ENST00000443430 CCDC88BA6NC98 1476 aa39.17■■■■□ 3.86
POLR2J3-202ENST00000443430 IFT140Q96RY7 1462 aa39.17■■■■□ 3.86
POLR2J3-202ENST00000443430 RIMBP3CA6NJZ7 1639 aa39.14■■■■□ 3.86
POLR2J3-202ENST00000443430 RIMBP3BA6NNM3 1639 aa39.14■■■■□ 3.86
POLR2J3-202ENST00000443430 RIMBP3Q9UFD9 1639 aa39.14■■■■□ 3.86
POLR2J3-202ENST00000443430 TOPBP1Q92547 1522 aa39.07■■■■□ 3.84
POLR2J3-202ENST00000443430 ARHGEF11O15085 1522 aa38.96■■■■□ 3.83
POLR2J3-202ENST00000443430 ABCC8Q09428 1581 aa38.94■■■■□ 3.82
POLR2J3-202ENST00000443430 EIF4G3O43432 1585 aaKnown RBP38.9■■■■□ 3.82
POLR2J3-202ENST00000443430 DNMBPQ6XZF7 1577 aa38.87■■■■□ 3.81
POLR2J3-202ENST00000443430 AQRO60306 1485 aaKnown RBP eCLIP38.77■■■■□ 3.84e-8■■■■□ 22.5
POLR2J3-202ENST00000443430 TARBP1Q13395 1621 aaKnown RBP38.76■■■■□ 3.8
POLR2J3-202ENST00000443430 CYB5RLQ6IPT4 315 aa38.73■■■■□ 3.79
POLR2J3-202ENST00000443430 CHD1O14646 1710 aa38.72■■■■□ 3.79
POLR2J3-202ENST00000443430 POLA1P09884 1462 aaPredicted RBP38.64■■■■□ 3.78
POLR2J3-202ENST00000443430 FBLN2P98095 1184 aa38.59■■■■□ 3.77
POLR2J3-202ENST00000443430 ARAP1Q96P48 1450 aa38.56■■■■□ 3.76
POLR2J3-202ENST00000443430 RAD54L2Q9Y4B4 1467 aa38.53■■■■□ 3.76
POLR2J3-202ENST00000443430 SOGA1O94964 1423 aa38.46■■■■□ 3.75
POLR2J3-202ENST00000443430 TDRD9Q8NDG6 1382 aaKnown RBP38.46■■■■□ 3.75
POLR2J3-202ENST00000443430 TRHP20396 242 aaPredicted RBP38.43■■■■□ 3.74
POLR2J3-202ENST00000443430 SNAPC4Q5SXM2 1469 aa38.34■■■■□ 3.73
POLR2J3-202ENST00000443430 FGD5Q6ZNL6 1462 aa38.33■■■■□ 3.73
POLR2J3-202ENST00000443430 WDR97A6NE52 1622 aa38.3■■■■□ 3.72
POLR2J3-202ENST00000443430 CLASP1Q7Z460 1538 aa38.27■■■■□ 3.72
POLR2J3-202ENST00000443430 CHMP7Q8WUX9 453 aaPredicted RBP38.24■■■■□ 3.71
POLR2J3-202ENST00000443430 CUX1P39880 1505 aa38.22■■■■□ 3.71
POLR2J3-202ENST00000443430 MAGI1Q96QZ7 1491 aaPredicted RBP38.22■■■■□ 3.71
POLR2J3-202ENST00000443430 SYNJ1O43426 1573 aa38.19■■■■□ 3.7
POLR2J3-202ENST00000443430 GRIN2BQ13224 1484 aa38.16■■■■□ 3.7
POLR2J3-202ENST00000443430 SYNJ2O15056 1496 aa38.09■■■■□ 3.69
POLR2J3-202ENST00000443430 GAPVD1Q14C86 1478 aa37.98■■■■□ 3.67
POLR2J3-202ENST00000443430 PBRM1Q86U86 1689 aa37.97■■■■□ 3.67
POLR2J3-202ENST00000443430 ABCA10Q8WWZ4 1543 aa37.87■■■■□ 3.65
POLR2J3-202ENST00000443430 ABCA5Q8WWZ7 1642 aa37.84■■■■□ 3.65
POLR2J3-202ENST00000443430 GRIN2AQ12879 1464 aa37.68■■■■□ 3.62
POLR2J3-202ENST00000443430 ERCC6L2Q5T890 1561 aa37.67■■■■□ 3.62
POLR2J3-202ENST00000443430 AEBP2Q6ZN18 517 aaPredicted RBP37.63■■■■□ 3.61
POLR2J3-202ENST00000443430 WRNQ14191 1432 aaPredicted RBP eCLIP37.61■■■■□ 3.611e-6■■■■■ 58.5
POLR2J3-202ENST00000443430 NUP160Q12769 1436 aa37.59■■■■□ 3.61
POLR2J3-202ENST00000443430 ADAMTS12P58397 1594 aa37.59■■■■□ 3.61
POLR2J3-202ENST00000443430 CEP170Q5SW79 1584 aa37.58■■■■□ 3.61
POLR2J3-202ENST00000443430 SUPT5HO00267 1087 aaKnown RBP37.55■■■■□ 3.6
POLR2J3-202ENST00000443430 TOP2BQ02880 1626 aa37.47■■■■□ 3.59
POLR2J3-202ENST00000443430 BIVM-ERCC5R4GMW8 1640 aa37.47■■■■□ 3.59
POLR2J3-202ENST00000443430 FHAD1B1AJZ9 1412 aa37.47■■■■□ 3.59
POLR2J3-202ENST00000443430 SHROOM2Q13796 1616 aa37.47■■■■□ 3.59
POLR2J3-202ENST00000443430 ERICH3Q5RHP9 1530 aa37.37■■■■□ 3.57
POLR2J3-202ENST00000443430 PRG4Q92954 1404 aaPredicted RBP37.26■■■■□ 3.55
POLR2J3-202ENST00000443430 KIF13AQ9H1H9 1805 aa37.23■■■■□ 3.55
POLR2J3-202ENST00000443430 JPH4Q96JJ6 628 aa37.22■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms