RNA–Protein interactions for RNA: ENST00000443187.1

PRKD3-203, Transcript of protein kinase D3, humanhuman

TSL 4

Gene PRKD3, Length 695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKD3-203ENST00000443187 NISCHQ9Y2I1 1504 aa27.61■■■□□ 2.01
PRKD3-203ENST00000443187 CCDC180Q9P1Z9 1646 aa24.55■■□□□ 1.52
PRKD3-203ENST00000443187 ABCC9O60706 1549 aa24.24■■□□□ 1.47
PRKD3-203ENST00000443187 RB1CC1Q8TDY2 1594 aa23.17■■□□□ 1.3
PRKD3-203ENST00000443187 NACADO15069 1562 aa23.11■■□□□ 1.29
PRKD3-203ENST00000443187 DCAF8L2P0C7V8 631 aa23.09■■□□□ 1.29
PRKD3-203ENST00000443187 ZCCHC6Q5VYS8 1495 aaKnown RBP22.98■■□□□ 1.27
PRKD3-203ENST00000443187 MYO15BQ96JP2 1530 aa22.92■■□□□ 1.26
PRKD3-203ENST00000443187 DCAF1Q9Y4B6 1507 aa22.79■■□□□ 1.24
PRKD3-203ENST00000443187 UNC13AQ9UPW8 1703 aa22.72■■□□□ 1.23
PRKD3-203ENST00000443187 PABPN1Q86U42 306 aaKnown RBP eCLIP22.64■■□□□ 1.21
PRKD3-203ENST00000443187 BICRAQ9NZM4 1560 aa22.59■■□□□ 1.21
PRKD3-203ENST00000443187 DNAJC5BQ9UF47 199 aa22.47■■□□□ 1.19
PRKD3-203ENST00000443187 SCRIBQ14160 1630 aa22.46■■□□□ 1.19
PRKD3-203ENST00000443187 SHROOM4Q9ULL8 1493 aa22.18■■□□□ 1.14
PRKD3-203ENST00000443187 EIF4G1Q04637 1599 aaKnown RBP21.95■■□□□ 1.1
PRKD3-203ENST00000443187 CC2D2AQ9P2K1 1620 aa21.9■■□□□ 1.1
PRKD3-203ENST00000443187 CECR2Q9BXF3 1484 aa21.76■■□□□ 1.07
PRKD3-203ENST00000443187 SMARCA4P51532 1647 aa21.45■■□□□ 1.02
PRKD3-203ENST00000443187 ATAD2BQ9ULI0 1458 aa21.38■■□□□ 1.01
PRKD3-203ENST00000443187 NCAPD3P42695 1498 aa21.37■■□□□ 1.01
PRKD3-203ENST00000443187 BAZ1AQ9NRL2 1556 aaPredicted RBP21.36■■□□□ 1.01
PRKD3-203ENST00000443187 MROH2BQ7Z745 1585 aa21.31■■□□□ 1
PRKD3-203ENST00000443187 SMARCA2P51531 1590 aa21.27■■□□□ 1
PRKD3-203ENST00000443187 PEG3Q9GZU2 1588 aa21.23■□□□□ 0.99
PRKD3-203ENST00000443187 HMGXB3Q12766 1538 aa21.23■□□□□ 0.99
PRKD3-203ENST00000443187 BAZ1BQ9UIG0 1483 aaKnown RBP21.15■□□□□ 0.98
PRKD3-203ENST00000443187 WIZO95785 1651 aa21.07■□□□□ 0.96
PRKD3-203ENST00000443187 RSF1Q96T23 1441 aaPredicted RBP21■□□□□ 0.95
PRKD3-203ENST00000443187 NESP48681 1621 aa20.96■□□□□ 0.95
PRKD3-203ENST00000443187 ERCC6Q03468 1493 aa20.81■□□□□ 0.92
PRKD3-203ENST00000443187 TOP2AP11388 1531 aaKnown RBP20.79■□□□□ 0.92
PRKD3-203ENST00000443187 LAMC3Q9Y6N6 1575 aa20.79■□□□□ 0.92
PRKD3-203ENST00000443187 CADPSQ9ULU8 1353 aa20.72■□□□□ 0.91
PRKD3-203ENST00000443187 KIF21AQ7Z4S6 1674 aa20.67■□□□□ 0.9
PRKD3-203ENST00000443187 CUX2O14529 1486 aa20.66■□□□□ 0.9
PRKD3-203ENST00000443187 THOC2Q8NI27 1593 aaKnown RBP20.64■□□□□ 0.9
PRKD3-203ENST00000443187 PDS5BQ9NTI5 1447 aa20.63■□□□□ 0.89
PRKD3-203ENST00000443187 CFTRP13569 1480 aa20.59■□□□□ 0.89
PRKD3-203ENST00000443187 CCDC88BA6NC98 1476 aa20.58■□□□□ 0.89
PRKD3-203ENST00000443187 FANCD2Q9BXW9 1451 aa20.5■□□□□ 0.87
PRKD3-203ENST00000443187 MRC2Q9UBG0 1479 aa20.47■□□□□ 0.87
PRKD3-203ENST00000443187 CEP164Q9UPV0 1460 aa20.46■□□□□ 0.87
PRKD3-203ENST00000443187 WDR62O43379 1518 aa20.43■□□□□ 0.86
PRKD3-203ENST00000443187 PRDM2Q13029 1718 aa20.37■□□□□ 0.85
PRKD3-203ENST00000443187 URB2Q14146 1524 aaKnown RBP20.35■□□□□ 0.85
PRKD3-203ENST00000443187 SUPT5HO00267 1087 aaKnown RBP20.34■□□□□ 0.85
PRKD3-203ENST00000443187 DNAJC5Q9H3Z4 198 aa20.23■□□□□ 0.83
PRKD3-203ENST00000443187 TOPBP1Q92547 1522 aa20.17■□□□□ 0.82
PRKD3-203ENST00000443187 DNMBPQ6XZF7 1577 aa20.11■□□□□ 0.81
PRKD3-203ENST00000443187 ABCC8Q09428 1581 aa20.06■□□□□ 0.8
PRKD3-203ENST00000443187 ZNF608Q9ULD9 1512 aaPredicted RBP20.04■□□□□ 0.8
PRKD3-203ENST00000443187 IFT140Q96RY7 1462 aa20.04■□□□□ 0.8
PRKD3-203ENST00000443187 POLA1P09884 1462 aaPredicted RBP19.99■□□□□ 0.79
PRKD3-203ENST00000443187 CUX1P39880 1505 aa19.99■□□□□ 0.79
PRKD3-203ENST00000443187 TARBP1Q13395 1621 aaKnown RBP19.98■□□□□ 0.79
PRKD3-203ENST00000443187 RAD54L2Q9Y4B4 1467 aa19.94■□□□□ 0.78
PRKD3-203ENST00000443187 FGD5Q6ZNL6 1462 aa19.92■□□□□ 0.78
PRKD3-203ENST00000443187 EIF4G3O43432 1585 aaKnown RBP19.91■□□□□ 0.78
PRKD3-203ENST00000443187 AQRO60306 1485 aaKnown RBP eCLIP19.89■□□□□ 0.77
PRKD3-203ENST00000443187 SOGA1O94964 1423 aa19.88■□□□□ 0.77
PRKD3-203ENST00000443187 TDRD9Q8NDG6 1382 aaKnown RBP19.83■□□□□ 0.76
PRKD3-203ENST00000443187 SYNJ1O43426 1573 aa19.78■□□□□ 0.76
PRKD3-203ENST00000443187 WDR97A6NE52 1622 aa19.77■□□□□ 0.76
PRKD3-203ENST00000443187 OSCARQ8IYS5 282 aa19.77■□□□□ 0.76
PRKD3-203ENST00000443187 WRNQ14191 1432 aaPredicted RBP eCLIP19.76■□□□□ 0.75
PRKD3-203ENST00000443187 TOP2BQ02880 1626 aa19.74■□□□□ 0.75
PRKD3-203ENST00000443187 BIVM-ERCC5R4GMW8 1640 aa19.74■□□□□ 0.75
PRKD3-203ENST00000443187 ABCA10Q8WWZ4 1543 aa19.71■□□□□ 0.75
PRKD3-203ENST00000443187 CHD1O14646 1710 aa19.68■□□□□ 0.74
PRKD3-203ENST00000443187 SNAPC4Q5SXM2 1469 aa19.68■□□□□ 0.74
PRKD3-203ENST00000443187 ABCA5Q8WWZ7 1642 aa19.65■□□□□ 0.74
PRKD3-203ENST00000443187 GRIN2BQ13224 1484 aa19.65■□□□□ 0.74
PRKD3-203ENST00000443187 GAPVD1Q14C86 1478 aa19.65■□□□□ 0.74
PRKD3-203ENST00000443187 FBLN2P98095 1184 aa19.62■□□□□ 0.73
PRKD3-203ENST00000443187 PBRM1Q86U86 1689 aa19.62■□□□□ 0.73
PRKD3-203ENST00000443187 MAGI1Q96QZ7 1491 aaPredicted RBP19.6■□□□□ 0.73
PRKD3-203ENST00000443187 SYNJ2O15056 1496 aa19.54■□□□□ 0.72
PRKD3-203ENST00000443187 RIMBP3CA6NJZ7 1639 aa19.53■□□□□ 0.72
PRKD3-203ENST00000443187 RIMBP3BA6NNM3 1639 aa19.53■□□□□ 0.72
PRKD3-203ENST00000443187 RIMBP3Q9UFD9 1639 aa19.53■□□□□ 0.72
PRKD3-203ENST00000443187 CHMP7Q8WUX9 453 aaPredicted RBP19.52■□□□□ 0.72
PRKD3-203ENST00000443187 ARHGEF11O15085 1522 aa19.51■□□□□ 0.71
PRKD3-203ENST00000443187 TRIM41Q8WV44 630 aa19.5■□□□□ 0.71
PRKD3-203ENST00000443187 CLASP1Q7Z460 1538 aa19.49■□□□□ 0.71
PRKD3-203ENST00000443187 ADAMTS12P58397 1594 aa19.47■□□□□ 0.71
PRKD3-203ENST00000443187 ERICH3Q5RHP9 1530 aa19.44■□□□□ 0.7
PRKD3-203ENST00000443187 GRIN2AQ12879 1464 aa19.42■□□□□ 0.7
PRKD3-203ENST00000443187 FHAD1B1AJZ9 1412 aa19.41■□□□□ 0.7
PRKD3-203ENST00000443187 CEP170Q5SW79 1584 aa19.37■□□□□ 0.69
PRKD3-203ENST00000443187 ARAP1Q96P48 1450 aa19.37■□□□□ 0.69
PRKD3-203ENST00000443187 NUP160Q12769 1436 aa19.35■□□□□ 0.69
PRKD3-203ENST00000443187 IGF1RP08069 1367 aa19.33■□□□□ 0.69
PRKD3-203ENST00000443187 KIF27Q86VH2 1401 aa19.33■□□□□ 0.68
PRKD3-203ENST00000443187 CYB5RLQ6IPT4 315 aa19.32■□□□□ 0.68
PRKD3-203ENST00000443187 ERCC6L2Q5T890 1561 aa19.27■□□□□ 0.68
PRKD3-203ENST00000443187 RUSC2Q8N2Y8 1516 aa19.25■□□□□ 0.67
PRKD3-203ENST00000443187 SHROOM2Q13796 1616 aa19.22■□□□□ 0.67
PRKD3-203ENST00000443187 CUL7Q14999 1698 aa19.22■□□□□ 0.67
PRKD3-203ENST00000443187 CARMIL1Q5VZK9 1371 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms