RNA–Protein interactions for RNA: ENST00000441580.5

CPSF4-206, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2 BASIC

Gene CPSF4, Length 942 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-206ENST00000441580 NISCHQ9Y2I1 1504 aa29.43■■■□□ 2.3
CPSF4-206ENST00000441580 CCDC180Q9P1Z9 1646 aa25.74■■□□□ 1.71
CPSF4-206ENST00000441580 ZCCHC6Q5VYS8 1495 aaKnown RBP24.85■■□□□ 1.57
CPSF4-206ENST00000441580 DCAF1Q9Y4B6 1507 aa24.46■■□□□ 1.51
CPSF4-206ENST00000441580 MYO15BQ96JP2 1530 aa24.1■■□□□ 1.45
CPSF4-206ENST00000441580 SHROOM4Q9ULL8 1493 aa23.97■■□□□ 1.43
CPSF4-206ENST00000441580 DCAF8L2P0C7V8 631 aa23.88■■□□□ 1.41
CPSF4-206ENST00000441580 ABCC9O60706 1549 aa23.83■■□□□ 1.41
CPSF4-206ENST00000441580 NACADO15069 1562 aa23.82■■□□□ 1.4
CPSF4-206ENST00000441580 RB1CC1Q8TDY2 1594 aa23.56■■□□□ 1.36
CPSF4-206ENST00000441580 SCRIBQ14160 1630 aa23.54■■□□□ 1.36
CPSF4-206ENST00000441580 SUPT5HO00267 1087 aaKnown RBP23.13■■□□□ 1.29
CPSF4-206ENST00000441580 UNC13AQ9UPW8 1703 aa23.06■■□□□ 1.28
CPSF4-206ENST00000441580 RSF1Q96T23 1441 aaPredicted RBP22.85■■□□□ 1.25
CPSF4-206ENST00000441580 BAZ1AQ9NRL2 1556 aaPredicted RBP22.78■■□□□ 1.24
CPSF4-206ENST00000441580 BICRAQ9NZM4 1560 aa22.75■■□□□ 1.23
CPSF4-206ENST00000441580 CECR2Q9BXF3 1484 aa22.73■■□□□ 1.23
CPSF4-206ENST00000441580 MROH2BQ7Z745 1585 aa22.69■■□□□ 1.22
CPSF4-206ENST00000441580 SMARCA4P51532 1647 aa22.63■■□□□ 1.21
CPSF4-206ENST00000441580 WIZO95785 1651 aa22.54■■□□□ 1.2
CPSF4-206ENST00000441580 TOP2AP11388 1531 aaKnown RBP22.43■■□□□ 1.18
CPSF4-206ENST00000441580 PEG3Q9GZU2 1588 aa22.38■■□□□ 1.17
CPSF4-206ENST00000441580 PABPN1Q86U42 306 aaKnown RBP eCLIP22.36■■□□□ 1.17
CPSF4-206ENST00000441580 CHIC1Q5VXU3 224 aa22.33■■□□□ 1.17
CPSF4-206ENST00000441580 SMARCA2P51531 1590 aa22.22■■□□□ 1.15
CPSF4-206ENST00000441580 EIF4G1Q04637 1599 aaKnown RBP22.18■■□□□ 1.14
CPSF4-206ENST00000441580 ATAD2BQ9ULI0 1458 aa22.11■■□□□ 1.13
CPSF4-206ENST00000441580 CCDC88BA6NC98 1476 aa22.05■■□□□ 1.12
CPSF4-206ENST00000441580 BAZ1BQ9UIG0 1483 aaKnown RBP22.05■■□□□ 1.12
CPSF4-206ENST00000441580 HMGXB3Q12766 1538 aa22.02■■□□□ 1.12
CPSF4-206ENST00000441580 NCAPD3P42695 1498 aa21.89■■□□□ 1.09
CPSF4-206ENST00000441580 TRIM41Q8WV44 630 aa21.8■■□□□ 1.08
CPSF4-206ENST00000441580 ABCC8Q09428 1581 aa21.68■■□□□ 1.06
CPSF4-206ENST00000441580 CC2D2AQ9P2K1 1620 aa21.66■■□□□ 1.06
CPSF4-206ENST00000441580 PRDM2Q13029 1718 aa21.6■■□□□ 1.05
CPSF4-206ENST00000441580 WRNQ14191 1432 aaPredicted RBP eCLIP21.56■■□□□ 1.045e-6■■■■■ 29.2
CPSF4-206ENST00000441580 EEA1Q15075 1411 aa21.49■■□□□ 1.03
CPSF4-206ENST00000441580 CFTRP13569 1480 aa21.49■■□□□ 1.03
CPSF4-206ENST00000441580 SYNJ1O43426 1573 aa21.48■■□□□ 1.03
CPSF4-206ENST00000441580 BIVM-ERCC5R4GMW8 1640 aa21.44■■□□□ 1.02
CPSF4-206ENST00000441580 TOP2BQ02880 1626 aa21.43■■□□□ 1.02
CPSF4-206ENST00000441580 LOC105371045A0A1W2PR82 267 aa21.34■■□□□ 1.01
CPSF4-206ENST00000441580 FAM9AQ8IZU1 332 aaPredicted RBP21.3■■□□□ 1
CPSF4-206ENST00000441580 CADPSQ9ULU8 1353 aa21.3■■□□□ 1
CPSF4-206ENST00000441580 SOGA1O94964 1423 aa21.26■□□□□ 0.99
CPSF4-206ENST00000441580 CUX1P39880 1505 aa21.24■□□□□ 0.99
CPSF4-206ENST00000441580 KIF21BO75037 1637 aa21.22■□□□□ 0.99
CPSF4-206ENST00000441580 LAMC3Q9Y6N6 1575 aa21.2■□□□□ 0.98
CPSF4-206ENST00000441580 GOLGA3Q08378 1498 aa21.17■□□□□ 0.98
CPSF4-206ENST00000441580 CEP164Q9UPV0 1460 aa21.14■□□□□ 0.98
CPSF4-206ENST00000441580 RUSC2Q8N2Y8 1516 aa21.12■□□□□ 0.97
CPSF4-206ENST00000441580 FANCD2Q9BXW9 1451 aa21.12■□□□□ 0.97
CPSF4-206ENST00000441580 CSRNP3Q8WYN3 585 aa21.1■□□□□ 0.97
CPSF4-206ENST00000441580 TNIKQ9UKE5 1360 aa21.07■□□□□ 0.96
CPSF4-206ENST00000441580 DNMBPQ6XZF7 1577 aa21.06■□□□□ 0.96
CPSF4-206ENST00000441580 ERICH3Q5RHP9 1530 aa21.03■□□□□ 0.96
CPSF4-206ENST00000441580 KIF27Q86VH2 1401 aa21.01■□□□□ 0.95
CPSF4-206ENST00000441580 CEP162Q5TB80 1403 aa20.98■□□□□ 0.95
CPSF4-206ENST00000441580 NESP48681 1621 aa20.98■□□□□ 0.95
CPSF4-206ENST00000441580 FGD5Q6ZNL6 1462 aa20.98■□□□□ 0.95
CPSF4-206ENST00000441580 PDS5BQ9NTI5 1447 aa20.95■□□□□ 0.94
CPSF4-206ENST00000441580 TOPBP1Q92547 1522 aa20.93■□□□□ 0.94
CPSF4-206ENST00000441580 PRXQ9BXM0 1461 aa20.92■□□□□ 0.94
CPSF4-206ENST00000441580 EHMT2Q96KQ7 1210 aa20.91■□□□□ 0.94
CPSF4-206ENST00000441580 RAPGEF2Q9Y4G8 1499 aa20.88■□□□□ 0.93
CPSF4-206ENST00000441580 KIF21AQ7Z4S6 1674 aa20.87■□□□□ 0.93
CPSF4-206ENST00000441580 CUX2O14529 1486 aa20.87■□□□□ 0.93
CPSF4-206ENST00000441580 WDR97A6NE52 1622 aa20.85■□□□□ 0.93
CPSF4-206ENST00000441580 ABCA10Q8WWZ4 1543 aa20.84■□□□□ 0.93
CPSF4-206ENST00000441580 POLA1P09884 1462 aaPredicted RBP20.83■□□□□ 0.93
CPSF4-206ENST00000441580 UBTFP17480 764 aaKnown RBP20.83■□□□□ 0.93
CPSF4-206ENST00000441580 URB2Q14146 1524 aaKnown RBP20.82■□□□□ 0.92
CPSF4-206ENST00000441580 CLIP1P30622 1438 aa20.76■□□□□ 0.91
CPSF4-206ENST00000441580 CUL7Q14999 1698 aa20.75■□□□□ 0.91
CPSF4-206ENST00000441580 TRIM26Q12899 539 aaPredicted RBP20.75■□□□□ 0.91
CPSF4-206ENST00000441580 MRC2Q9UBG0 1479 aa20.71■□□□□ 0.91
CPSF4-206ENST00000441580 PCGF6Q9BYE7 350 aa20.71■□□□□ 0.91
CPSF4-206ENST00000441580 ABCA5Q8WWZ7 1642 aa20.71■□□□□ 0.91
CPSF4-206ENST00000441580 RAD54L2Q9Y4B4 1467 aa20.68■□□□□ 0.9
CPSF4-206ENST00000441580 DNAJC5BQ9UF47 199 aa20.67■□□□□ 0.9
CPSF4-206ENST00000441580 IGF1RP08069 1367 aa20.66■□□□□ 0.9
CPSF4-206ENST00000441580 VPS8Q8N3P4 1428 aa20.66■□□□□ 0.9
CPSF4-206ENST00000441580 WDR62O43379 1518 aa20.63■□□□□ 0.89
CPSF4-206ENST00000441580 TARBP1Q13395 1621 aaKnown RBP20.62■□□□□ 0.89
CPSF4-206ENST00000441580 CARMIL1Q5VZK9 1371 aa20.61■□□□□ 0.89
CPSF4-206ENST00000441580 ARAP1Q96P48 1450 aa20.55■□□□□ 0.88
CPSF4-206ENST00000441580 CTTNBP2Q8WZ74 1663 aa20.54■□□□□ 0.88
CPSF4-206ENST00000441580 GAPVD1Q14C86 1478 aa20.54■□□□□ 0.88
CPSF4-206ENST00000441580 PBRM1Q86U86 1689 aa20.53■□□□□ 0.88
CPSF4-206ENST00000441580 THOC2Q8NI27 1593 aaKnown RBP20.51■□□□□ 0.87
CPSF4-206ENST00000441580 IFT140Q96RY7 1462 aa20.5■□□□□ 0.87
CPSF4-206ENST00000441580 ERCC6Q03468 1493 aa20.49■□□□□ 0.87
CPSF4-206ENST00000441580 EFCAB5A4FU69 1503 aa20.48■□□□□ 0.87
CPSF4-206ENST00000441580 ARHGAP35Q9NRY4 1499 aa20.47■□□□□ 0.87
CPSF4-206ENST00000441580 ADAMTS12P58397 1594 aa20.44■□□□□ 0.86
CPSF4-206ENST00000441580 HRCP23327 699 aa20.43■□□□□ 0.86
CPSF4-206ENST00000441580 TDRD9Q8NDG6 1382 aaKnown RBP20.4■□□□□ 0.86
CPSF4-206ENST00000441580 GRIN2BQ13224 1484 aa20.37■□□□□ 0.85
CPSF4-206ENST00000441580 FHAD1B1AJZ9 1412 aa20.35■□□□□ 0.85
CPSF4-206ENST00000441580 EIF4G3O43432 1585 aaKnown RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms