RNA–Protein interactions for RNA: ENST00000441460.5

RFTN1-204, Transcript of raftlin, lipid raft linker 1, humanhuman

APPRIS ALT2 TSL 5

Gene RFTN1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFTN1-204ENST00000441460 NISCHQ9Y2I1 1504 aa33.38■■■□□ 2.93
RFTN1-204ENST00000441460 CCDC180Q9P1Z9 1646 aa29.72■■■□□ 2.35
RFTN1-204ENST00000441460 ABCC9O60706 1549 aa29.4■■■□□ 2.3
RFTN1-204ENST00000441460 RB1CC1Q8TDY2 1594 aa28.11■■■□□ 2.09
RFTN1-204ENST00000441460 NACADO15069 1562 aa28.02■■■□□ 2.08
RFTN1-204ENST00000441460 DCAF8L2P0C7V8 631 aa27.96■■■□□ 2.07
RFTN1-204ENST00000441460 MYO15BQ96JP2 1530 aa27.78■■■□□ 2.04
RFTN1-204ENST00000441460 ZCCHC6Q5VYS8 1495 aaKnown RBP27.76■■■□□ 2.04
RFTN1-204ENST00000441460 DCAF1Q9Y4B6 1507 aa27.57■■■□□ 2
RFTN1-204ENST00000441460 UNC13AQ9UPW8 1703 aa27.5■■□□□ 1.99
RFTN1-204ENST00000441460 PABPN1Q86U42 306 aaKnown RBP eCLIP27.44■■□□□ 1.98
RFTN1-204ENST00000441460 BICRAQ9NZM4 1560 aa27.35■■□□□ 1.97
RFTN1-204ENST00000441460 DNAJC5BQ9UF47 199 aa27.28■■□□□ 1.96
RFTN1-204ENST00000441460 SCRIBQ14160 1630 aa27.15■■□□□ 1.94
RFTN1-204ENST00000441460 SHROOM4Q9ULL8 1493 aa26.94■■□□□ 1.9
RFTN1-204ENST00000441460 EIF4G1Q04637 1599 aaKnown RBP26.61■■□□□ 1.85
RFTN1-204ENST00000441460 CC2D2AQ9P2K1 1620 aa26.57■■□□□ 1.84
RFTN1-204ENST00000441460 CECR2Q9BXF3 1484 aa26.42■■□□□ 1.82
RFTN1-204ENST00000441460 SMARCA4P51532 1647 aa25.94■■□□□ 1.74
RFTN1-204ENST00000441460 NCAPD3P42695 1498 aa25.9■■□□□ 1.74
RFTN1-204ENST00000441460 ATAD2BQ9ULI0 1458 aa25.89■■□□□ 1.73
RFTN1-204ENST00000441460 BAZ1AQ9NRL2 1556 aaPredicted RBP25.85■■□□□ 1.73
RFTN1-204ENST00000441460 SMARCA2P51531 1590 aa25.79■■□□□ 1.72
RFTN1-204ENST00000441460 MROH2BQ7Z745 1585 aa25.74■■□□□ 1.71
RFTN1-204ENST00000441460 HMGXB3Q12766 1538 aa25.73■■□□□ 1.71
RFTN1-204ENST00000441460 PEG3Q9GZU2 1588 aa25.69■■□□□ 1.7
RFTN1-204ENST00000441460 BAZ1BQ9UIG0 1483 aaKnown RBP25.62■■□□□ 1.69
RFTN1-204ENST00000441460 WIZO95785 1651 aa25.43■■□□□ 1.66
RFTN1-204ENST00000441460 NESP48681 1621 aa25.39■■□□□ 1.66
RFTN1-204ENST00000441460 RSF1Q96T23 1441 aaPredicted RBP25.36■■□□□ 1.65
RFTN1-204ENST00000441460 ERCC6Q03468 1493 aa25.3■■□□□ 1.64
RFTN1-204ENST00000441460 LAMC3Q9Y6N6 1575 aa25.21■■□□□ 1.63
RFTN1-204ENST00000441460 CUX2O14529 1486 aa25.14■■□□□ 1.61
RFTN1-204ENST00000441460 TOP2AP11388 1531 aaKnown RBP25.13■■□□□ 1.61
RFTN1-204ENST00000441460 CADPSQ9ULU8 1353 aa25.13■■□□□ 1.61
RFTN1-204ENST00000441460 PDS5BQ9NTI5 1447 aa25.05■■□□□ 1.6
RFTN1-204ENST00000441460 THOC2Q8NI27 1593 aaKnown RBP25.04■■□□□ 1.6
RFTN1-204ENST00000441460 KIF21AQ7Z4S6 1674 aa25.04■■□□□ 1.6
RFTN1-204ENST00000441460 CFTRP13569 1480 aa24.94■■□□□ 1.58
RFTN1-204ENST00000441460 CCDC88BA6NC98 1476 aa24.86■■□□□ 1.57
RFTN1-204ENST00000441460 FANCD2Q9BXW9 1451 aa24.83■■□□□ 1.57
RFTN1-204ENST00000441460 MRC2Q9UBG0 1479 aa24.83■■□□□ 1.57
RFTN1-204ENST00000441460 CEP164Q9UPV0 1460 aa24.8■■□□□ 1.56
RFTN1-204ENST00000441460 WDR62O43379 1518 aa24.77■■□□□ 1.56
RFTN1-204ENST00000441460 DNAJC5Q9H3Z4 198 aa24.7■■□□□ 1.54
RFTN1-204ENST00000441460 PRDM2Q13029 1718 aa24.64■■□□□ 1.54
RFTN1-204ENST00000441460 URB2Q14146 1524 aaKnown RBP24.63■■□□□ 1.53
RFTN1-204ENST00000441460 SUPT5HO00267 1087 aaKnown RBP24.5■■□□□ 1.51
RFTN1-204ENST00000441460 TOPBP1Q92547 1522 aa24.42■■□□□ 1.5
RFTN1-204ENST00000441460 DNMBPQ6XZF7 1577 aa24.34■■□□□ 1.49
RFTN1-204ENST00000441460 ABCC8Q09428 1581 aa24.33■■□□□ 1.49
RFTN1-204ENST00000441460 IFT140Q96RY7 1462 aa24.3■■□□□ 1.48
RFTN1-204ENST00000441460 ZNF608Q9ULD9 1512 aaPredicted RBP24.27■■□□□ 1.48
RFTN1-204ENST00000441460 POLA1P09884 1462 aaPredicted RBP24.2■■□□□ 1.47
RFTN1-204ENST00000441460 TARBP1Q13395 1621 aaKnown RBP24.17■■□□□ 1.46
RFTN1-204ENST00000441460 CUX1P39880 1505 aa24.16■■□□□ 1.46
RFTN1-204ENST00000441460 RAD54L2Q9Y4B4 1467 aa24.13■■□□□ 1.45
RFTN1-204ENST00000441460 EIF4G3O43432 1585 aaKnown RBP24.12■■□□□ 1.45
RFTN1-204ENST00000441460 FGD5Q6ZNL6 1462 aa24.1■■□□□ 1.45
RFTN1-204ENST00000441460 AQRO60306 1485 aaKnown RBP eCLIP24.08■■□□□ 1.45
RFTN1-204ENST00000441460 SOGA1O94964 1423 aa24.07■■□□□ 1.44
RFTN1-204ENST00000441460 OSCARQ8IYS5 282 aa24.05■■□□□ 1.44
RFTN1-204ENST00000441460 TDRD9Q8NDG6 1382 aaKnown RBP24.01■■□□□ 1.43
RFTN1-204ENST00000441460 WDR97A6NE52 1622 aa23.91■■□□□ 1.42
RFTN1-204ENST00000441460 WRNQ14191 1432 aaPredicted RBP eCLIP23.88■■□□□ 1.41
RFTN1-204ENST00000441460 SYNJ1O43426 1573 aa23.86■■□□□ 1.41
RFTN1-204ENST00000441460 ABCA10Q8WWZ4 1543 aa23.84■■□□□ 1.41
RFTN1-204ENST00000441460 TOP2BQ02880 1626 aa23.84■■□□□ 1.41
RFTN1-204ENST00000441460 BIVM-ERCC5R4GMW8 1640 aa23.84■■□□□ 1.41
RFTN1-204ENST00000441460 CHD1O14646 1710 aa23.84■■□□□ 1.41
RFTN1-204ENST00000441460 SNAPC4Q5SXM2 1469 aa23.84■■□□□ 1.41
RFTN1-204ENST00000441460 GRIN2BQ13224 1484 aa23.81■■□□□ 1.4
RFTN1-204ENST00000441460 FBLN2P98095 1184 aa23.8■■□□□ 1.4
RFTN1-204ENST00000441460 GAPVD1Q14C86 1478 aa23.79■■□□□ 1.4
RFTN1-204ENST00000441460 ABCA5Q8WWZ7 1642 aa23.77■■□□□ 1.4
RFTN1-204ENST00000441460 MAGI1Q96QZ7 1491 aaPredicted RBP23.77■■□□□ 1.4
RFTN1-204ENST00000441460 TRIM41Q8WV44 630 aa23.76■■□□□ 1.39
RFTN1-204ENST00000441460 PBRM1Q86U86 1689 aa23.73■■□□□ 1.39
RFTN1-204ENST00000441460 RIMBP3CA6NJZ7 1639 aa23.71■■□□□ 1.39
RFTN1-204ENST00000441460 RIMBP3BA6NNM3 1639 aa23.71■■□□□ 1.39
RFTN1-204ENST00000441460 RIMBP3Q9UFD9 1639 aa23.71■■□□□ 1.39
RFTN1-204ENST00000441460 ARHGEF11O15085 1522 aa23.7■■□□□ 1.38
RFTN1-204ENST00000441460 SYNJ2O15056 1496 aa23.69■■□□□ 1.38
RFTN1-204ENST00000441460 CHMP7Q8WUX9 453 aaPredicted RBP23.69■■□□□ 1.38
RFTN1-204ENST00000441460 CLASP1Q7Z460 1538 aa23.62■■□□□ 1.37
RFTN1-204ENST00000441460 ADAMTS12P58397 1594 aa23.57■■□□□ 1.36
RFTN1-204ENST00000441460 ERICH3Q5RHP9 1530 aa23.54■■□□□ 1.36
RFTN1-204ENST00000441460 GRIN2AQ12879 1464 aa23.52■■□□□ 1.36
RFTN1-204ENST00000441460 ARAP1Q96P48 1450 aa23.51■■□□□ 1.35
RFTN1-204ENST00000441460 FHAD1B1AJZ9 1412 aa23.5■■□□□ 1.35
RFTN1-204ENST00000441460 CYB5RLQ6IPT4 315 aa23.48■■□□□ 1.35
RFTN1-204ENST00000441460 NUP160Q12769 1436 aa23.44■■□□□ 1.34
RFTN1-204ENST00000441460 CEP170Q5SW79 1584 aa23.44■■□□□ 1.34
RFTN1-204ENST00000441460 KIF27Q86VH2 1401 aa23.38■■□□□ 1.33
RFTN1-204ENST00000441460 IGF1RP08069 1367 aa23.37■■□□□ 1.33
RFTN1-204ENST00000441460 ERCC6L2Q5T890 1561 aa23.31■■□□□ 1.32
RFTN1-204ENST00000441460 SHROOM2Q13796 1616 aa23.28■■□□□ 1.32
RFTN1-204ENST00000441460 CUL7Q14999 1698 aa23.24■■□□□ 1.31
RFTN1-204ENST00000441460 RUSC2Q8N2Y8 1516 aa23.23■■□□□ 1.31
RFTN1-204ENST00000441460 CARMIL1Q5VZK9 1371 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms