RNA–Protein interactions for RNA: ENST00000440835.6

PTPRR-204, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRR, Length 2,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-204ENST00000440835 NISCHQ9Y2I1 1504 aa15.11■□□□□ 0.01
PTPRR-204ENST00000440835 CCDC180Q9P1Z9 1646 aa13.72□□□□□ -0.21
PTPRR-204ENST00000440835 ABCC9O60706 1549 aa13.5□□□□□ -0.25
PTPRR-204ENST00000440835 RB1CC1Q8TDY2 1594 aa13.02□□□□□ -0.32
PTPRR-204ENST00000440835 NACADO15069 1562 aa12.95□□□□□ -0.34
PTPRR-204ENST00000440835 MYO15BQ96JP2 1530 aa12.84□□□□□ -0.35
PTPRR-204ENST00000440835 UNC13AQ9UPW8 1703 aa12.66□□□□□ -0.38
PTPRR-204ENST00000440835 DNAJC5BQ9UF47 199 aa12.63□□□□□ -0.39
PTPRR-204ENST00000440835 DCAF1Q9Y4B6 1507 aa12.62□□□□□ -0.39
PTPRR-204ENST00000440835 SHROOM4Q9ULL8 1493 aa12.62□□□□□ -0.39
PTPRR-204ENST00000440835 BICRAQ9NZM4 1560 aa12.56□□□□□ -0.4
PTPRR-204ENST00000440835 DCAF8L2P0C7V8 631 aa12.52□□□□□ -0.41
PTPRR-204ENST00000440835 ZCCHC6Q5VYS8 1495 aaKnown RBP12.52□□□□□ -0.41
PTPRR-204ENST00000440835 PABPN1Q86U42 306 aaKnown RBP eCLIP12.47□□□□□ -0.41
PTPRR-204ENST00000440835 CC2D2AQ9P2K1 1620 aa12.28□□□□□ -0.44
PTPRR-204ENST00000440835 SCRIBQ14160 1630 aa12.28□□□□□ -0.44
PTPRR-204ENST00000440835 EIF4G1Q04637 1599 aaKnown RBP12.27□□□□□ -0.45
PTPRR-204ENST00000440835 CECR2Q9BXF3 1484 aa12.24□□□□□ -0.45
PTPRR-204ENST00000440835 NCAPD3P42695 1498 aa11.91□□□□□ -0.5
PTPRR-204ENST00000440835 CUX2O14529 1486 aa11.86□□□□□ -0.51
PTPRR-204ENST00000440835 SMARCA2P51531 1590 aa11.86□□□□□ -0.51
PTPRR-204ENST00000440835 HMGXB3Q12766 1538 aa11.85□□□□□ -0.51
PTPRR-204ENST00000440835 SMARCA4P51532 1647 aa11.8□□□□□ -0.52
PTPRR-204ENST00000440835 ATAD2BQ9ULI0 1458 aa11.8□□□□□ -0.52
PTPRR-204ENST00000440835 DNAJC5Q9H3Z4 198 aa11.78□□□□□ -0.52
PTPRR-204ENST00000440835 PEG3Q9GZU2 1588 aa11.78□□□□□ -0.52
PTPRR-204ENST00000440835 BAZ1AQ9NRL2 1556 aaPredicted RBP11.77□□□□□ -0.52
PTPRR-204ENST00000440835 ERCC6Q03468 1493 aa11.73□□□□□ -0.53
PTPRR-204ENST00000440835 BAZ1BQ9UIG0 1483 aaKnown RBP11.69□□□□□ -0.54
PTPRR-204ENST00000440835 LAMC3Q9Y6N6 1575 aa11.68□□□□□ -0.54
PTPRR-204ENST00000440835 THOC2Q8NI27 1593 aaKnown RBP11.6□□□□□ -0.55
PTPRR-204ENST00000440835 PDS5BQ9NTI5 1447 aa11.58□□□□□ -0.56
PTPRR-204ENST00000440835 MROH2BQ7Z745 1585 aa11.56□□□□□ -0.56
PTPRR-204ENST00000440835 NESP48681 1621 aa11.56□□□□□ -0.56
PTPRR-204ENST00000440835 KIF21AQ7Z4S6 1674 aa11.51□□□□□ -0.57
PTPRR-204ENST00000440835 CADPSQ9ULU8 1353 aa11.49□□□□□ -0.57
PTPRR-204ENST00000440835 MRC2Q9UBG0 1479 aa11.46□□□□□ -0.57
PTPRR-204ENST00000440835 WDR62O43379 1518 aa11.46□□□□□ -0.58
PTPRR-204ENST00000440835 WIZO95785 1651 aa11.42□□□□□ -0.58
PTPRR-204ENST00000440835 CEP164Q9UPV0 1460 aa11.39□□□□□ -0.59
PTPRR-204ENST00000440835 TOP2AP11388 1531 aaKnown RBP11.37□□□□□ -0.59
PTPRR-204ENST00000440835 CFTRP13569 1480 aa11.37□□□□□ -0.59
PTPRR-204ENST00000440835 PRDM2Q13029 1718 aa11.36□□□□□ -0.59
PTPRR-204ENST00000440835 FANCD2Q9BXW9 1451 aa11.34□□□□□ -0.59
PTPRR-204ENST00000440835 RSF1Q96T23 1441 aaPredicted RBP11.32□□□□□ -0.6
PTPRR-204ENST00000440835 ABCC8Q09428 1581 aa11.24□□□□□ -0.61
PTPRR-204ENST00000440835 URB2Q14146 1524 aaKnown RBP11.23□□□□□ -0.61
PTPRR-204ENST00000440835 IFT140Q96RY7 1462 aa11.2□□□□□ -0.62
PTPRR-204ENST00000440835 OSCARQ8IYS5 282 aa11.19□□□□□ -0.62
PTPRR-204ENST00000440835 CCDC88BA6NC98 1476 aa11.17□□□□□ -0.62
PTPRR-204ENST00000440835 DNMBPQ6XZF7 1577 aa11.14□□□□□ -0.63
PTPRR-204ENST00000440835 TOPBP1Q92547 1522 aa11.13□□□□□ -0.63
PTPRR-204ENST00000440835 WDR97A6NE52 1622 aa11.12□□□□□ -0.63
PTPRR-204ENST00000440835 TRIM41Q8WV44 630 aa11.09□□□□□ -0.63
PTPRR-204ENST00000440835 EIF4G3O43432 1585 aaKnown RBP11.07□□□□□ -0.64
PTPRR-204ENST00000440835 RIMBP3CA6NJZ7 1639 aa11.06□□□□□ -0.64
PTPRR-204ENST00000440835 RIMBP3BA6NNM3 1639 aa11.06□□□□□ -0.64
PTPRR-204ENST00000440835 TARBP1Q13395 1621 aaKnown RBP11.06□□□□□ -0.64
PTPRR-204ENST00000440835 RIMBP3Q9UFD9 1639 aa11.06□□□□□ -0.64
PTPRR-204ENST00000440835 ZNF608Q9ULD9 1512 aaPredicted RBP11.04□□□□□ -0.64
PTPRR-204ENST00000440835 ARHGEF11O15085 1522 aa11.01□□□□□ -0.65
PTPRR-204ENST00000440835 CHD1O14646 1710 aa11□□□□□ -0.65
PTPRR-204ENST00000440835 POLA1P09884 1462 aaPredicted RBP10.99□□□□□ -0.65
PTPRR-204ENST00000440835 MAGI1Q96QZ7 1491 aaPredicted RBP10.95□□□□□ -0.66
PTPRR-204ENST00000440835 SOGA1O94964 1423 aa10.94□□□□□ -0.66
PTPRR-204ENST00000440835 AQRO60306 1485 aaKnown RBP eCLIP10.94□□□□□ -0.66
PTPRR-204ENST00000440835 SYNJ1O43426 1573 aa10.92□□□□□ -0.66
PTPRR-204ENST00000440835 CLASP1Q7Z460 1538 aa10.91□□□□□ -0.66
PTPRR-204ENST00000440835 GRIN2BQ13224 1484 aa10.91□□□□□ -0.66
PTPRR-204ENST00000440835 FGD5Q6ZNL6 1462 aa10.91□□□□□ -0.66
PTPRR-204ENST00000440835 CUX1P39880 1505 aa10.89□□□□□ -0.67
PTPRR-204ENST00000440835 ARAP1Q96P48 1450 aa10.88□□□□□ -0.67
PTPRR-204ENST00000440835 SYNJ2O15056 1496 aa10.88□□□□□ -0.67
PTPRR-204ENST00000440835 RAD54L2Q9Y4B4 1467 aa10.88□□□□□ -0.67
PTPRR-204ENST00000440835 SNAPC4Q5SXM2 1469 aa10.87□□□□□ -0.67
PTPRR-204ENST00000440835 PBRM1Q86U86 1689 aa10.87□□□□□ -0.67
PTPRR-204ENST00000440835 ABCA10Q8WWZ4 1543 aa10.85□□□□□ -0.67
PTPRR-204ENST00000440835 ABCA5Q8WWZ7 1642 aa10.84□□□□□ -0.67
PTPRR-204ENST00000440835 TDRD9Q8NDG6 1382 aaKnown RBP10.84□□□□□ -0.67
PTPRR-204ENST00000440835 GAPVD1Q14C86 1478 aa10.83□□□□□ -0.68
PTPRR-204ENST00000440835 CYB5RLQ6IPT4 315 aa10.82□□□□□ -0.68
PTPRR-204ENST00000440835 CHMP7Q8WUX9 453 aaPredicted RBP10.82□□□□□ -0.68
PTPRR-204ENST00000440835 FBLN2P98095 1184 aa10.81□□□□□ -0.68
PTPRR-204ENST00000440835 BIVM-ERCC5R4GMW8 1640 aa10.8□□□□□ -0.68
PTPRR-204ENST00000440835 WRNQ14191 1432 aaPredicted RBP eCLIP10.78□□□□□ -0.68
PTPRR-204ENST00000440835 TOP2BQ02880 1626 aa10.77□□□□□ -0.69
PTPRR-204ENST00000440835 ADAMTS12P58397 1594 aa10.75□□□□□ -0.69
PTPRR-204ENST00000440835 ERICH3Q5RHP9 1530 aa10.75□□□□□ -0.69
PTPRR-204ENST00000440835 GRIN2AQ12879 1464 aa10.74□□□□□ -0.69
PTPRR-204ENST00000440835 NUP160Q12769 1436 aa10.73□□□□□ -0.69
PTPRR-204ENST00000440835 SHROOM2Q13796 1616 aa10.73□□□□□ -0.69
PTPRR-204ENST00000440835 FHAD1B1AJZ9 1412 aa10.72□□□□□ -0.69
PTPRR-204ENST00000440835 TRHP20396 242 aaPredicted RBP10.72□□□□□ -0.69
PTPRR-204ENST00000440835 CEP170Q5SW79 1584 aa10.68□□□□□ -0.7
PTPRR-204ENST00000440835 CUL7Q14999 1698 aa10.6□□□□□ -0.71
PTPRR-204ENST00000440835 SUPT5HO00267 1087 aaKnown RBP10.6□□□□□ -0.71
PTPRR-204ENST00000440835 RUSC2Q8N2Y8 1516 aa10.6□□□□□ -0.71
PTPRR-204ENST00000440835 ERCC6L2Q5T890 1561 aa10.59□□□□□ -0.71
PTPRR-204ENST00000440835 PRG4Q92954 1404 aaPredicted RBP10.57□□□□□ -0.72
PTPRR-204ENST00000440835 MAPKBP1O60336 1514 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms