RNA–Protein interactions for RNA: ENST00000440636.1

SP4-203, Transcript of Sp4 transcription factor, humanhuman

TSL 3

Gene SP4, Length 288 nt, Biotype retained intron.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP4-203ENST00000440636 NISCHQ9Y2I1 1504 aa33.17■■■□□ 2.9
SP4-203ENST00000440636 ABCC9O60706 1549 aa30.04■■■□□ 2.4
SP4-203ENST00000440636 CCDC180Q9P1Z9 1646 aa29.84■■■□□ 2.37
SP4-203ENST00000440636 RB1CC1Q8TDY2 1594 aa28.5■■■□□ 2.15
SP4-203ENST00000440636 DNAJC5BQ9UF47 199 aa28.39■■■□□ 2.14
SP4-203ENST00000440636 NACADO15069 1562 aa28.27■■■□□ 2.12
SP4-203ENST00000440636 DCAF8L2P0C7V8 631 aa28.03■■■□□ 2.08
SP4-203ENST00000440636 PABPN1Q86U42 306 aaKnown RBP eCLIP27.93■■■□□ 2.06
SP4-203ENST00000440636 UNC13AQ9UPW8 1703 aa27.87■■■□□ 2.05
SP4-203ENST00000440636 MYO15BQ96JP2 1530 aa27.83■■■□□ 2.05
SP4-203ENST00000440636 BICRAQ9NZM4 1560 aa27.71■■■□□ 2.03
SP4-203ENST00000440636 ZCCHC6Q5VYS8 1495 aaKnown RBP27.45■■□□□ 1.99
SP4-203ENST00000440636 DCAF1Q9Y4B6 1507 aa27.4■■□□□ 1.98
SP4-203ENST00000440636 SHROOM4Q9ULL8 1493 aa27.31■■□□□ 1.96
SP4-203ENST00000440636 SCRIBQ14160 1630 aa27.16■■□□□ 1.94
SP4-203ENST00000440636 CC2D2AQ9P2K1 1620 aa27.13■■□□□ 1.93
SP4-203ENST00000440636 CECR2Q9BXF3 1484 aa27.09■■□□□ 1.93
SP4-203ENST00000440636 EIF4G1Q04637 1599 aaKnown RBP27.03■■□□□ 1.92
SP4-203ENST00000440636 DNAJC5Q9H3Z4 198 aa26.2■■□□□ 1.78
SP4-203ENST00000440636 NCAPD3P42695 1498 aa26.11■■□□□ 1.77
SP4-203ENST00000440636 ATAD2BQ9ULI0 1458 aa26■■□□□ 1.75
SP4-203ENST00000440636 CUX2O14529 1486 aa25.98■■□□□ 1.75
SP4-203ENST00000440636 ERCC6Q03468 1493 aa25.93■■□□□ 1.74
SP4-203ENST00000440636 SMARCA4P51532 1647 aa25.92■■□□□ 1.74
SP4-203ENST00000440636 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
SP4-203ENST00000440636 HMGXB3Q12766 1538 aa25.89■■□□□ 1.74
SP4-203ENST00000440636 NESP48681 1621 aa25.76■■□□□ 1.71
SP4-203ENST00000440636 BAZ1AQ9NRL2 1556 aaPredicted RBP25.75■■□□□ 1.71
SP4-203ENST00000440636 BAZ1BQ9UIG0 1483 aaKnown RBP25.72■■□□□ 1.71
SP4-203ENST00000440636 PEG3Q9GZU2 1588 aa25.69■■□□□ 1.7
SP4-203ENST00000440636 MROH2BQ7Z745 1585 aa25.56■■□□□ 1.68
SP4-203ENST00000440636 THOC2Q8NI27 1593 aaKnown RBP25.54■■□□□ 1.68
SP4-203ENST00000440636 LAMC3Q9Y6N6 1575 aa25.53■■□□□ 1.68
SP4-203ENST00000440636 KIF21AQ7Z4S6 1674 aa25.41■■□□□ 1.66
SP4-203ENST00000440636 PDS5BQ9NTI5 1447 aa25.39■■□□□ 1.66
SP4-203ENST00000440636 CADPSQ9ULU8 1353 aa25.31■■□□□ 1.64
SP4-203ENST00000440636 WIZO95785 1651 aa25.23■■□□□ 1.63
SP4-203ENST00000440636 MRC2Q9UBG0 1479 aa25.19■■□□□ 1.62
SP4-203ENST00000440636 WDR62O43379 1518 aa25.16■■□□□ 1.62
SP4-203ENST00000440636 CEP164Q9UPV0 1460 aa25.04■■□□□ 1.6
SP4-203ENST00000440636 FANCD2Q9BXW9 1451 aa25.01■■□□□ 1.59
SP4-203ENST00000440636 CFTRP13569 1480 aa24.98■■□□□ 1.59
SP4-203ENST00000440636 RSF1Q96T23 1441 aaPredicted RBP24.95■■□□□ 1.59
SP4-203ENST00000440636 TRIM41Q8WV44 630 aa24.94■■□□□ 1.58
SP4-203ENST00000440636 TOP2AP11388 1531 aaKnown RBP24.9■■□□□ 1.58
SP4-203ENST00000440636 URB2Q14146 1524 aaKnown RBP24.83■■□□□ 1.57
SP4-203ENST00000440636 OSCARQ8IYS5 282 aa24.75■■□□□ 1.55
SP4-203ENST00000440636 PRDM2Q13029 1718 aa24.68■■□□□ 1.54
SP4-203ENST00000440636 CCDC88BA6NC98 1476 aa24.63■■□□□ 1.53
SP4-203ENST00000440636 IFT140Q96RY7 1462 aa24.56■■□□□ 1.52
SP4-203ENST00000440636 ZNF608Q9ULD9 1512 aaPredicted RBP24.56■■□□□ 1.52
SP4-203ENST00000440636 TOPBP1Q92547 1522 aa24.51■■□□□ 1.51
SP4-203ENST00000440636 RIMBP3CA6NJZ7 1639 aa24.46■■□□□ 1.51
SP4-203ENST00000440636 RIMBP3BA6NNM3 1639 aa24.46■■□□□ 1.51
SP4-203ENST00000440636 RIMBP3Q9UFD9 1639 aa24.46■■□□□ 1.51
SP4-203ENST00000440636 ABCC8Q09428 1581 aa24.43■■□□□ 1.5
SP4-203ENST00000440636 DNMBPQ6XZF7 1577 aa24.4■■□□□ 1.5
SP4-203ENST00000440636 EIF4G3O43432 1585 aaKnown RBP24.39■■□□□ 1.5
SP4-203ENST00000440636 ARHGEF11O15085 1522 aa24.37■■□□□ 1.49
SP4-203ENST00000440636 TARBP1Q13395 1621 aaKnown RBP24.32■■□□□ 1.48
SP4-203ENST00000440636 AQRO60306 1485 aaKnown RBP eCLIP24.3■■□□□ 1.482e-11■■■■■ 58.5
SP4-203ENST00000440636 POLA1P09884 1462 aaPredicted RBP24.26■■□□□ 1.47
SP4-203ENST00000440636 CHD1O14646 1710 aa24.24■■□□□ 1.47
SP4-203ENST00000440636 CYB5RLQ6IPT4 315 aa24.18■■□□□ 1.46
SP4-203ENST00000440636 RAD54L2Q9Y4B4 1467 aa24.17■■□□□ 1.46
SP4-203ENST00000440636 FBLN2P98095 1184 aa24.14■■□□□ 1.45
SP4-203ENST00000440636 ARAP1Q96P48 1450 aa24.13■■□□□ 1.45
SP4-203ENST00000440636 SOGA1O94964 1423 aa24.12■■□□□ 1.45
SP4-203ENST00000440636 TDRD9Q8NDG6 1382 aaKnown RBP24.11■■□□□ 1.45
SP4-203ENST00000440636 FGD5Q6ZNL6 1462 aa24.07■■□□□ 1.44
SP4-203ENST00000440636 WDR97A6NE52 1622 aa24.05■■□□□ 1.44
SP4-203ENST00000440636 SNAPC4Q5SXM2 1469 aa24.04■■□□□ 1.44
SP4-203ENST00000440636 CUX1P39880 1505 aa24.03■■□□□ 1.44
SP4-203ENST00000440636 CLASP1Q7Z460 1538 aa23.99■■□□□ 1.43
SP4-203ENST00000440636 MAGI1Q96QZ7 1491 aaPredicted RBP23.97■■□□□ 1.43
SP4-203ENST00000440636 TRHP20396 242 aaPredicted RBP23.95■■□□□ 1.42
SP4-203ENST00000440636 GRIN2BQ13224 1484 aa23.94■■□□□ 1.42
SP4-203ENST00000440636 CHMP7Q8WUX9 453 aaPredicted RBP23.94■■□□□ 1.42
SP4-203ENST00000440636 SYNJ1O43426 1573 aa23.93■■□□□ 1.42
SP4-203ENST00000440636 SYNJ2O15056 1496 aa23.89■■□□□ 1.42
SP4-203ENST00000440636 GAPVD1Q14C86 1478 aa23.83■■□□□ 1.41
SP4-203ENST00000440636 PBRM1Q86U86 1689 aa23.83■■□□□ 1.4
SP4-203ENST00000440636 ABCA10Q8WWZ4 1543 aa23.79■■□□□ 1.4
SP4-203ENST00000440636 ABCA5Q8WWZ7 1642 aa23.77■■□□□ 1.4
SP4-203ENST00000440636 SUPT5HO00267 1087 aaKnown RBP23.65■■□□□ 1.38
SP4-203ENST00000440636 GRIN2AQ12879 1464 aa23.64■■□□□ 1.38
SP4-203ENST00000440636 WRNQ14191 1432 aaPredicted RBP eCLIP23.64■■□□□ 1.37
SP4-203ENST00000440636 ADAMTS12P58397 1594 aa23.61■■□□□ 1.37
SP4-203ENST00000440636 ERCC6L2Q5T890 1561 aa23.6■■□□□ 1.37
SP4-203ENST00000440636 NUP160Q12769 1436 aa23.59■■□□□ 1.37
SP4-203ENST00000440636 TOP2BQ02880 1626 aa23.58■■□□□ 1.36
SP4-203ENST00000440636 BIVM-ERCC5R4GMW8 1640 aa23.58■■□□□ 1.36
SP4-203ENST00000440636 CEP170Q5SW79 1584 aa23.57■■□□□ 1.36
SP4-203ENST00000440636 FHAD1B1AJZ9 1412 aa23.52■■□□□ 1.36
SP4-203ENST00000440636 SHROOM2Q13796 1616 aa23.5■■□□□ 1.35
SP4-203ENST00000440636 ERICH3Q5RHP9 1530 aa23.49■■□□□ 1.35
SP4-203ENST00000440636 AEBP2Q6ZN18 517 aaPredicted RBP23.39■■□□□ 1.33
SP4-203ENST00000440636 PRG4Q92954 1404 aaPredicted RBP23.35■■□□□ 1.33
SP4-203ENST00000440636 JPH4Q96JJ6 628 aa23.32■■□□□ 1.32
SP4-203ENST00000440636 KIF13AQ9H1H9 1805 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms