RNA–Protein interactions for RNA: ENST00000440552.5

PTPRN-205, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-205ENST00000440552 NISCHQ9Y2I1 1504 aa35.97■■■■□ 3.35
PTPRN-205ENST00000440552 ABCC9O60706 1549 aa32.53■■■□□ 2.8
PTPRN-205ENST00000440552 CCDC180Q9P1Z9 1646 aa32.38■■■□□ 2.77
PTPRN-205ENST00000440552 RB1CC1Q8TDY2 1594 aa30.92■■■□□ 2.54
PTPRN-205ENST00000440552 DNAJC5BQ9UF47 199 aa30.73■■■□□ 2.51
PTPRN-205ENST00000440552 NACADO15069 1562 aa30.69■■■□□ 2.5
PTPRN-205ENST00000440552 DCAF8L2P0C7V8 631 aa30.34■■■□□ 2.45
PTPRN-205ENST00000440552 MYO15BQ96JP2 1530 aa30.25■■■□□ 2.43
PTPRN-205ENST00000440552 PABPN1Q86U42 306 aaKnown RBP eCLIP30.24■■■□□ 2.43
PTPRN-205ENST00000440552 UNC13AQ9UPW8 1703 aa30.17■■■□□ 2.42
PTPRN-205ENST00000440552 BICRAQ9NZM4 1560 aa30.03■■■□□ 2.4
PTPRN-205ENST00000440552 DCAF1Q9Y4B6 1507 aa29.76■■■□□ 2.35
PTPRN-205ENST00000440552 ZCCHC6Q5VYS8 1495 aaKnown RBP29.75■■■□□ 2.35
PTPRN-205ENST00000440552 SHROOM4Q9ULL8 1493 aa29.69■■■□□ 2.34
PTPRN-205ENST00000440552 SCRIBQ14160 1630 aa29.4■■■□□ 2.3
PTPRN-205ENST00000440552 CC2D2AQ9P2K1 1620 aa29.4■■■□□ 2.3
PTPRN-205ENST00000440552 CECR2Q9BXF3 1484 aa29.36■■■□□ 2.29
PTPRN-205ENST00000440552 EIF4G1Q04637 1599 aaKnown RBP29.3■■■□□ 2.28
PTPRN-205ENST00000440552 DNAJC5Q9H3Z4 198 aa28.45■■■□□ 2.14
PTPRN-205ENST00000440552 NCAPD3P42695 1498 aa28.34■■■□□ 2.13
PTPRN-205ENST00000440552 CUX2O14529 1486 aa28.21■■■□□ 2.11
PTPRN-205ENST00000440552 ATAD2BQ9ULI0 1458 aa28.19■■■□□ 2.1
PTPRN-205ENST00000440552 ERCC6Q03468 1493 aa28.11■■■□□ 2.09
PTPRN-205ENST00000440552 SMARCA2P51531 1590 aa28.11■■■□□ 2.09
PTPRN-205ENST00000440552 HMGXB3Q12766 1538 aa28.09■■■□□ 2.09
PTPRN-205ENST00000440552 SMARCA4P51532 1647 aa28.08■■■□□ 2.09
PTPRN-205ENST00000440552 BAZ1AQ9NRL2 1556 aaPredicted RBP27.94■■■□□ 2.06
PTPRN-205ENST00000440552 NESP48681 1621 aa27.88■■■□□ 2.05
PTPRN-205ENST00000440552 BAZ1BQ9UIG0 1483 aaKnown RBP27.88■■■□□ 2.05
PTPRN-205ENST00000440552 PEG3Q9GZU2 1588 aa27.86■■■□□ 2.05
PTPRN-205ENST00000440552 LAMC3Q9Y6N6 1575 aa27.71■■■□□ 2.03
PTPRN-205ENST00000440552 MROH2BQ7Z745 1585 aa27.68■■■□□ 2.02
PTPRN-205ENST00000440552 THOC2Q8NI27 1593 aaKnown RBP27.67■■■□□ 2.02
PTPRN-205ENST00000440552 PDS5BQ9NTI5 1447 aa27.57■■■□□ 2
PTPRN-205ENST00000440552 KIF21AQ7Z4S6 1674 aa27.5■■□□□ 1.99
PTPRN-205ENST00000440552 CADPSQ9ULU8 1353 aa27.45■■□□□ 1.98
PTPRN-205ENST00000440552 MRC2Q9UBG0 1479 aa27.32■■□□□ 1.96
PTPRN-205ENST00000440552 WIZO95785 1651 aa27.3■■□□□ 1.96
PTPRN-205ENST00000440552 WDR62O43379 1518 aa27.27■■□□□ 1.96
PTPRN-205ENST00000440552 CEP164Q9UPV0 1460 aa27.16■■□□□ 1.94
PTPRN-205ENST00000440552 FANCD2Q9BXW9 1451 aa27.11■■□□□ 1.93
PTPRN-205ENST00000440552 CFTRP13569 1480 aa27.1■■□□□ 1.93
PTPRN-205ENST00000440552 RSF1Q96T23 1441 aaPredicted RBP27.05■■□□□ 1.92
PTPRN-205ENST00000440552 TRIM41Q8WV44 630 aa27■■□□□ 1.91
PTPRN-205ENST00000440552 TOP2AP11388 1531 aaKnown RBP27■■□□□ 1.91
PTPRN-205ENST00000440552 URB2Q14146 1524 aaKnown RBP26.89■■□□□ 1.89
PTPRN-205ENST00000440552 OSCARQ8IYS5 282 aa26.86■■□□□ 1.89
PTPRN-205ENST00000440552 PRDM2Q13029 1718 aa26.76■■□□□ 1.88
PTPRN-205ENST00000440552 CCDC88BA6NC98 1476 aa26.68■■□□□ 1.86
PTPRN-205ENST00000440552 IFT140Q96RY7 1462 aa26.65■■□□□ 1.86
PTPRN-205ENST00000440552 ZNF608Q9ULD9 1512 aaPredicted RBP26.59■■□□□ 1.85
PTPRN-205ENST00000440552 TOPBP1Q92547 1522 aa26.57■■□□□ 1.84
PTPRN-205ENST00000440552 ABCC8Q09428 1581 aa26.55■■□□□ 1.84
PTPRN-205ENST00000440552 RIMBP3CA6NJZ7 1639 aa26.5■■□□□ 1.83
PTPRN-205ENST00000440552 RIMBP3BA6NNM3 1639 aa26.5■■□□□ 1.83
PTPRN-205ENST00000440552 RIMBP3Q9UFD9 1639 aa26.5■■□□□ 1.83
PTPRN-205ENST00000440552 DNMBPQ6XZF7 1577 aa26.46■■□□□ 1.83
PTPRN-205ENST00000440552 EIF4G3O43432 1585 aaKnown RBP26.42■■□□□ 1.82
PTPRN-205ENST00000440552 ARHGEF11O15085 1522 aa26.41■■□□□ 1.82
PTPRN-205ENST00000440552 TARBP1Q13395 1621 aaKnown RBP26.36■■□□□ 1.81
PTPRN-205ENST00000440552 AQRO60306 1485 aaKnown RBP eCLIP26.31■■□□□ 1.8
PTPRN-205ENST00000440552 POLA1P09884 1462 aaPredicted RBP26.29■■□□□ 1.8
PTPRN-205ENST00000440552 CHD1O14646 1710 aa26.25■■□□□ 1.79
PTPRN-205ENST00000440552 CYB5RLQ6IPT4 315 aa26.21■■□□□ 1.79
PTPRN-205ENST00000440552 SOGA1O94964 1423 aa26.16■■□□□ 1.78
PTPRN-205ENST00000440552 RAD54L2Q9Y4B4 1467 aa26.16■■□□□ 1.78
PTPRN-205ENST00000440552 FBLN2P98095 1184 aa26.15■■□□□ 1.78
PTPRN-205ENST00000440552 WDR97A6NE52 1622 aa26.14■■□□□ 1.77
PTPRN-205ENST00000440552 ARAP1Q96P48 1450 aa26.13■■□□□ 1.77
PTPRN-205ENST00000440552 TDRD9Q8NDG6 1382 aaKnown RBP26.11■■□□□ 1.77
PTPRN-205ENST00000440552 FGD5Q6ZNL6 1462 aa26.07■■□□□ 1.76
PTPRN-205ENST00000440552 SNAPC4Q5SXM2 1469 aa26.04■■□□□ 1.76
PTPRN-205ENST00000440552 CUX1P39880 1505 aa26.02■■□□□ 1.76
PTPRN-205ENST00000440552 MAGI1Q96QZ7 1491 aaPredicted RBP26.01■■□□□ 1.75
PTPRN-205ENST00000440552 CLASP1Q7Z460 1538 aa26■■□□□ 1.75
PTPRN-205ENST00000440552 GRIN2BQ13224 1484 aa25.98■■□□□ 1.75
PTPRN-205ENST00000440552 CHMP7Q8WUX9 453 aaPredicted RBP25.97■■□□□ 1.75
PTPRN-205ENST00000440552 SYNJ1O43426 1573 aa25.95■■□□□ 1.75
PTPRN-205ENST00000440552 TRHP20396 242 aaPredicted RBP25.95■■□□□ 1.74
PTPRN-205ENST00000440552 SYNJ2O15056 1496 aa25.91■■□□□ 1.74
PTPRN-205ENST00000440552 GAPVD1Q14C86 1478 aa25.85■■□□□ 1.73
PTPRN-205ENST00000440552 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
PTPRN-205ENST00000440552 PBRM1Q86U86 1689 aa25.8■■□□□ 1.72
PTPRN-205ENST00000440552 ABCA5Q8WWZ7 1642 aa25.77■■□□□ 1.72
PTPRN-205ENST00000440552 WRNQ14191 1432 aaPredicted RBP eCLIP25.65■■□□□ 1.7
PTPRN-205ENST00000440552 GRIN2AQ12879 1464 aa25.63■■□□□ 1.69
PTPRN-205ENST00000440552 ADAMTS12P58397 1594 aa25.58■■□□□ 1.69
PTPRN-205ENST00000440552 NUP160Q12769 1436 aa25.58■■□□□ 1.69
PTPRN-205ENST00000440552 SUPT5HO00267 1087 aaKnown RBP25.58■■□□□ 1.69
PTPRN-205ENST00000440552 TOP2BQ02880 1626 aa25.55■■□□□ 1.68
PTPRN-205ENST00000440552 BIVM-ERCC5R4GMW8 1640 aa25.55■■□□□ 1.68
PTPRN-205ENST00000440552 FHAD1B1AJZ9 1412 aa25.53■■□□□ 1.68
PTPRN-205ENST00000440552 CEP170Q5SW79 1584 aa25.52■■□□□ 1.68
PTPRN-205ENST00000440552 ERCC6L2Q5T890 1561 aa25.52■■□□□ 1.68
PTPRN-205ENST00000440552 SHROOM2Q13796 1616 aa25.48■■□□□ 1.67
PTPRN-205ENST00000440552 ERICH3Q5RHP9 1530 aa25.47■■□□□ 1.67
PTPRN-205ENST00000440552 AEBP2Q6ZN18 517 aaPredicted RBP25.38■■□□□ 1.65
PTPRN-205ENST00000440552 PRG4Q92954 1404 aaPredicted RBP25.31■■□□□ 1.64
PTPRN-205ENST00000440552 JPH4Q96JJ6 628 aa25.3■■□□□ 1.64
PTPRN-205ENST00000440552 KIF13AQ9H1H9 1805 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms