RNA–Protein interactions for RNA: ENST00000440421.2

LTBR-202, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 729 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-202ENST00000440421 NISCHQ9Y2I1 1504 aa33.62■■■□□ 2.97
LTBR-202ENST00000440421 CCDC180Q9P1Z9 1646 aa29.95■■■□□ 2.38
LTBR-202ENST00000440421 ABCC9O60706 1549 aa29.55■■■□□ 2.32
LTBR-202ENST00000440421 RB1CC1Q8TDY2 1594 aa28.29■■■□□ 2.12
LTBR-202ENST00000440421 DCAF8L2P0C7V8 631 aa28.27■■■□□ 2.12
LTBR-202ENST00000440421 NACADO15069 1562 aa28.2■■■□□ 2.1
LTBR-202ENST00000440421 ZCCHC6Q5VYS8 1495 aaKnown RBP27.96■■■□□ 2.07
LTBR-202ENST00000440421 MYO15BQ96JP2 1530 aa27.92■■■□□ 2.06
LTBR-202ENST00000440421 DCAF1Q9Y4B6 1507 aa27.76■■■□□ 2.03
LTBR-202ENST00000440421 UNC13AQ9UPW8 1703 aa27.67■■■□□ 2.02
LTBR-202ENST00000440421 PABPN1Q86U42 306 aaKnown RBP eCLIP27.61■■■□□ 2.01
LTBR-202ENST00000440421 BICRAQ9NZM4 1560 aa27.45■■□□□ 1.99
LTBR-202ENST00000440421 SCRIBQ14160 1630 aa27.38■■□□□ 1.97
LTBR-202ENST00000440421 DNAJC5BQ9UF47 199 aa27.28■■□□□ 1.96
LTBR-202ENST00000440421 SHROOM4Q9ULL8 1493 aa27.07■■□□□ 1.92
LTBR-202ENST00000440421 EIF4G1Q04637 1599 aaKnown RBP26.75■■□□□ 1.87
LTBR-202ENST00000440421 CC2D2AQ9P2K1 1620 aa26.69■■□□□ 1.86
LTBR-202ENST00000440421 CECR2Q9BXF3 1484 aa26.55■■□□□ 1.84
LTBR-202ENST00000440421 SMARCA4P51532 1647 aa26.14■■□□□ 1.77
LTBR-202ENST00000440421 BAZ1AQ9NRL2 1556 aaPredicted RBP26.07■■□□□ 1.76
LTBR-202ENST00000440421 ATAD2BQ9ULI0 1458 aa26.03■■□□□ 1.76
LTBR-202ENST00000440421 NCAPD3P42695 1498 aa26.02■■□□□ 1.76
LTBR-202ENST00000440421 SMARCA2P51531 1590 aa25.98■■□□□ 1.75
LTBR-202ENST00000440421 MROH2BQ7Z745 1585 aa25.94■■□□□ 1.74
LTBR-202ENST00000440421 HMGXB3Q12766 1538 aa25.88■■□□□ 1.73
LTBR-202ENST00000440421 PEG3Q9GZU2 1588 aa25.83■■□□□ 1.73
LTBR-202ENST00000440421 BAZ1BQ9UIG0 1483 aaKnown RBP25.83■■□□□ 1.73
LTBR-202ENST00000440421 WIZO95785 1651 aa25.66■■□□□ 1.7
LTBR-202ENST00000440421 RSF1Q96T23 1441 aaPredicted RBP25.56■■□□□ 1.68
LTBR-202ENST00000440421 NESP48681 1621 aa25.52■■□□□ 1.68
LTBR-202ENST00000440421 ERCC6Q03468 1493 aa25.47■■□□□ 1.67
LTBR-202ENST00000440421 LAMC3Q9Y6N6 1575 aa25.38■■□□□ 1.65
LTBR-202ENST00000440421 TOP2AP11388 1531 aaKnown RBP25.34■■□□□ 1.65
LTBR-202ENST00000440421 CADPSQ9ULU8 1353 aa25.27■■□□□ 1.64
LTBR-202ENST00000440421 CUX2O14529 1486 aa25.21■■□□□ 1.63
LTBR-202ENST00000440421 PDS5BQ9NTI5 1447 aa25.21■■□□□ 1.63
LTBR-202ENST00000440421 KIF21AQ7Z4S6 1674 aa25.2■■□□□ 1.63
LTBR-202ENST00000440421 THOC2Q8NI27 1593 aaKnown RBP25.14■■□□□ 1.61
LTBR-202ENST00000440421 CFTRP13569 1480 aa25.08■■□□□ 1.6
LTBR-202ENST00000440421 CCDC88BA6NC98 1476 aa25.06■■□□□ 1.6
LTBR-202ENST00000440421 FANCD2Q9BXW9 1451 aa25■■□□□ 1.59
LTBR-202ENST00000440421 CEP164Q9UPV0 1460 aa24.99■■□□□ 1.59
LTBR-202ENST00000440421 MRC2Q9UBG0 1479 aa24.98■■□□□ 1.59
LTBR-202ENST00000440421 WDR62O43379 1518 aa24.89■■□□□ 1.57
LTBR-202ENST00000440421 PRDM2Q13029 1718 aa24.88■■□□□ 1.57
LTBR-202ENST00000440421 SUPT5HO00267 1087 aaKnown RBP24.86■■□□□ 1.57
LTBR-202ENST00000440421 URB2Q14146 1524 aaKnown RBP24.77■■□□□ 1.56
LTBR-202ENST00000440421 DNAJC5Q9H3Z4 198 aa24.67■■□□□ 1.54
LTBR-202ENST00000440421 TOPBP1Q92547 1522 aa24.58■■□□□ 1.53
LTBR-202ENST00000440421 ABCC8Q09428 1581 aa24.53■■□□□ 1.52
LTBR-202ENST00000440421 DNMBPQ6XZF7 1577 aa24.53■■□□□ 1.52
LTBR-202ENST00000440421 IFT140Q96RY7 1462 aa24.45■■□□□ 1.51
LTBR-202ENST00000440421 ZNF608Q9ULD9 1512 aaPredicted RBP24.4■■□□□ 1.5
LTBR-202ENST00000440421 POLA1P09884 1462 aaPredicted RBP24.36■■□□□ 1.49
LTBR-202ENST00000440421 CUX1P39880 1505 aa24.34■■□□□ 1.49
LTBR-202ENST00000440421 TARBP1Q13395 1621 aaKnown RBP24.32■■□□□ 1.48
LTBR-202ENST00000440421 FGD5Q6ZNL6 1462 aa24.29■■□□□ 1.48
LTBR-202ENST00000440421 EIF4G3O43432 1585 aaKnown RBP24.29■■□□□ 1.48
LTBR-202ENST00000440421 RAD54L2Q9Y4B4 1467 aa24.28■■□□□ 1.48
LTBR-202ENST00000440421 SOGA1O94964 1423 aa24.27■■□□□ 1.48
LTBR-202ENST00000440421 AQRO60306 1485 aaKnown RBP eCLIP24.25■■□□□ 1.472e-9■■■■□ 25.7
LTBR-202ENST00000440421 OSCARQ8IYS5 282 aa24.18■■□□□ 1.46
LTBR-202ENST00000440421 TDRD9Q8NDG6 1382 aaKnown RBP24.17■■□□□ 1.46
LTBR-202ENST00000440421 WRNQ14191 1432 aaPredicted RBP eCLIP24.11■■□□□ 1.45
LTBR-202ENST00000440421 SYNJ1O43426 1573 aa24.08■■□□□ 1.44
LTBR-202ENST00000440421 WDR97A6NE52 1622 aa24.07■■□□□ 1.44
LTBR-202ENST00000440421 TOP2BQ02880 1626 aa24.06■■□□□ 1.44
LTBR-202ENST00000440421 BIVM-ERCC5R4GMW8 1640 aa24.06■■□□□ 1.44
LTBR-202ENST00000440421 FBLN2P98095 1184 aa24.03■■□□□ 1.44
LTBR-202ENST00000440421 CHD1O14646 1710 aa24.02■■□□□ 1.44
LTBR-202ENST00000440421 ABCA10Q8WWZ4 1543 aa24.01■■□□□ 1.43
LTBR-202ENST00000440421 SNAPC4Q5SXM2 1469 aa24■■□□□ 1.43
LTBR-202ENST00000440421 GRIN2BQ13224 1484 aa23.99■■□□□ 1.43
LTBR-202ENST00000440421 GAPVD1Q14C86 1478 aa23.98■■□□□ 1.43
LTBR-202ENST00000440421 PBRM1Q86U86 1689 aa23.95■■□□□ 1.42
LTBR-202ENST00000440421 ABCA5Q8WWZ7 1642 aa23.94■■□□□ 1.42
LTBR-202ENST00000440421 MAGI1Q96QZ7 1491 aaPredicted RBP23.94■■□□□ 1.42
LTBR-202ENST00000440421 CHMP7Q8WUX9 453 aaPredicted RBP23.89■■□□□ 1.41
LTBR-202ENST00000440421 TRIM41Q8WV44 630 aa23.87■■□□□ 1.41
LTBR-202ENST00000440421 SYNJ2O15056 1496 aa23.85■■□□□ 1.41
LTBR-202ENST00000440421 RIMBP3CA6NJZ7 1639 aa23.82■■□□□ 1.4
LTBR-202ENST00000440421 RIMBP3BA6NNM3 1639 aa23.82■■□□□ 1.4
LTBR-202ENST00000440421 RIMBP3Q9UFD9 1639 aa23.82■■□□□ 1.4
LTBR-202ENST00000440421 ARHGEF11O15085 1522 aa23.78■■□□□ 1.4
LTBR-202ENST00000440421 ADAMTS12P58397 1594 aa23.74■■□□□ 1.39
LTBR-202ENST00000440421 CLASP1Q7Z460 1538 aa23.73■■□□□ 1.39
LTBR-202ENST00000440421 ERICH3Q5RHP9 1530 aa23.72■■□□□ 1.39
LTBR-202ENST00000440421 GRIN2AQ12879 1464 aa23.68■■□□□ 1.38
LTBR-202ENST00000440421 FHAD1B1AJZ9 1412 aa23.68■■□□□ 1.38
LTBR-202ENST00000440421 KIF27Q86VH2 1401 aa23.61■■□□□ 1.37
LTBR-202ENST00000440421 CYB5RLQ6IPT4 315 aa23.61■■□□□ 1.37
LTBR-202ENST00000440421 CEP170Q5SW79 1584 aa23.59■■□□□ 1.37
LTBR-202ENST00000440421 ARAP1Q96P48 1450 aa23.58■■□□□ 1.37
LTBR-202ENST00000440421 NUP160Q12769 1436 aa23.57■■□□□ 1.36
LTBR-202ENST00000440421 IGF1RP08069 1367 aa23.53■■□□□ 1.36
LTBR-202ENST00000440421 CUL7Q14999 1698 aa23.48■■□□□ 1.35
LTBR-202ENST00000440421 ERCC6L2Q5T890 1561 aa23.43■■□□□ 1.34
LTBR-202ENST00000440421 SHROOM2Q13796 1616 aa23.41■■□□□ 1.34
LTBR-202ENST00000440421 CARMIL1Q5VZK9 1371 aa23.4■■□□□ 1.34
LTBR-202ENST00000440421 RUSC2Q8N2Y8 1516 aa23.39■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 6.1 ms