RNA–Protein interactions for RNA: ENST00000440375.1

PDGFB-203, Transcript of platelet derived growth factor subunit B, humanhuman

TSL 4

Gene PDGFB, Length 556 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-203ENST00000440375 NISCHQ9Y2I1 1504 aa29.78■■■□□ 2.36
PDGFB-203ENST00000440375 CCDC180Q9P1Z9 1646 aa26.62■■□□□ 1.85
PDGFB-203ENST00000440375 ABCC9O60706 1549 aa26.47■■□□□ 1.83
PDGFB-203ENST00000440375 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
PDGFB-203ENST00000440375 NACADO15069 1562 aa25.1■■□□□ 1.61
PDGFB-203ENST00000440375 DCAF8L2P0C7V8 631 aa24.99■■□□□ 1.59
PDGFB-203ENST00000440375 MYO15BQ96JP2 1530 aa24.81■■□□□ 1.56
PDGFB-203ENST00000440375 ZCCHC6Q5VYS8 1495 aaKnown RBP24.76■■□□□ 1.55
PDGFB-203ENST00000440375 UNC13AQ9UPW8 1703 aa24.69■■□□□ 1.54
PDGFB-203ENST00000440375 PABPN1Q86U42 306 aaKnown RBP eCLIP24.66■■□□□ 1.54
PDGFB-203ENST00000440375 DNAJC5BQ9UF47 199 aa24.66■■□□□ 1.54
PDGFB-203ENST00000440375 DCAF1Q9Y4B6 1507 aa24.59■■□□□ 1.53
PDGFB-203ENST00000440375 BICRAQ9NZM4 1560 aa24.55■■□□□ 1.52
PDGFB-203ENST00000440375 SCRIBQ14160 1630 aa24.33■■□□□ 1.49
PDGFB-203ENST00000440375 SHROOM4Q9ULL8 1493 aa24.17■■□□□ 1.46
PDGFB-203ENST00000440375 EIF4G1Q04637 1599 aaKnown RBP23.91■■□□□ 1.42
PDGFB-203ENST00000440375 CC2D2AQ9P2K1 1620 aa23.91■■□□□ 1.42
PDGFB-203ENST00000440375 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
PDGFB-203ENST00000440375 SMARCA4P51532 1647 aa23.2■■□□□ 1.3
PDGFB-203ENST00000440375 NCAPD3P42695 1498 aa23.18■■□□□ 1.3
PDGFB-203ENST00000440375 ATAD2BQ9ULI0 1458 aa23.17■■□□□ 1.3
PDGFB-203ENST00000440375 BAZ1AQ9NRL2 1556 aaPredicted RBP23.09■■□□□ 1.29
PDGFB-203ENST00000440375 SMARCA2P51531 1590 aa23.08■■□□□ 1.29
PDGFB-203ENST00000440375 HMGXB3Q12766 1538 aa23.05■■□□□ 1.28
PDGFB-203ENST00000440375 MROH2BQ7Z745 1585 aa22.98■■□□□ 1.27
PDGFB-203ENST00000440375 PEG3Q9GZU2 1588 aa22.96■■□□□ 1.27
PDGFB-203ENST00000440375 BAZ1BQ9UIG0 1483 aaKnown RBP22.95■■□□□ 1.26
PDGFB-203ENST00000440375 NESP48681 1621 aa22.82■■□□□ 1.24
PDGFB-203ENST00000440375 ERCC6Q03468 1493 aa22.8■■□□□ 1.24
PDGFB-203ENST00000440375 WIZO95785 1651 aa22.71■■□□□ 1.23
PDGFB-203ENST00000440375 CUX2O14529 1486 aa22.68■■□□□ 1.22
PDGFB-203ENST00000440375 LAMC3Q9Y6N6 1575 aa22.62■■□□□ 1.21
PDGFB-203ENST00000440375 RSF1Q96T23 1441 aaPredicted RBP22.57■■□□□ 1.2
PDGFB-203ENST00000440375 THOC2Q8NI27 1593 aaKnown RBP22.55■■□□□ 1.2
PDGFB-203ENST00000440375 KIF21AQ7Z4S6 1674 aa22.5■■□□□ 1.19
PDGFB-203ENST00000440375 CADPSQ9ULU8 1353 aa22.49■■□□□ 1.19
PDGFB-203ENST00000440375 PDS5BQ9NTI5 1447 aa22.47■■□□□ 1.19
PDGFB-203ENST00000440375 TOP2AP11388 1531 aaKnown RBP22.43■■□□□ 1.18
PDGFB-203ENST00000440375 DNAJC5Q9H3Z4 198 aa22.42■■□□□ 1.18
PDGFB-203ENST00000440375 MRC2Q9UBG0 1479 aa22.31■■□□□ 1.16
PDGFB-203ENST00000440375 CFTRP13569 1480 aa22.28■■□□□ 1.16
PDGFB-203ENST00000440375 FANCD2Q9BXW9 1451 aa22.26■■□□□ 1.15
PDGFB-203ENST00000440375 WDR62O43379 1518 aa22.26■■□□□ 1.15
PDGFB-203ENST00000440375 CEP164Q9UPV0 1460 aa22.25■■□□□ 1.15
PDGFB-203ENST00000440375 CCDC88BA6NC98 1476 aa22.16■■□□□ 1.14
PDGFB-203ENST00000440375 URB2Q14146 1524 aaKnown RBP22.09■■□□□ 1.13
PDGFB-203ENST00000440375 PRDM2Q13029 1718 aa22.06■■□□□ 1.12
PDGFB-203ENST00000440375 TOPBP1Q92547 1522 aa21.86■■□□□ 1.09
PDGFB-203ENST00000440375 DNMBPQ6XZF7 1577 aa21.79■■□□□ 1.08
PDGFB-203ENST00000440375 ZNF608Q9ULD9 1512 aaPredicted RBP21.79■■□□□ 1.08
PDGFB-203ENST00000440375 IFT140Q96RY7 1462 aa21.78■■□□□ 1.08
PDGFB-203ENST00000440375 ABCC8Q09428 1581 aa21.74■■□□□ 1.07
PDGFB-203ENST00000440375 SUPT5HO00267 1087 aaKnown RBP21.69■■□□□ 1.06
PDGFB-203ENST00000440375 EIF4G3O43432 1585 aaKnown RBP21.67■■□□□ 1.06
PDGFB-203ENST00000440375 TARBP1Q13395 1621 aaKnown RBP21.66■■□□□ 1.06
PDGFB-203ENST00000440375 POLA1P09884 1462 aaPredicted RBP21.66■■□□□ 1.06
PDGFB-203ENST00000440375 OSCARQ8IYS5 282 aa21.63■■□□□ 1.05
PDGFB-203ENST00000440375 AQRO60306 1485 aaKnown RBP eCLIP21.59■■□□□ 1.05
PDGFB-203ENST00000440375 RAD54L2Q9Y4B4 1467 aa21.59■■□□□ 1.05
PDGFB-203ENST00000440375 CUX1P39880 1505 aa21.59■■□□□ 1.05
PDGFB-203ENST00000440375 FGD5Q6ZNL6 1462 aa21.56■■□□□ 1.04
PDGFB-203ENST00000440375 TRIM41Q8WV44 630 aa21.55■■□□□ 1.04
PDGFB-203ENST00000440375 SOGA1O94964 1423 aa21.52■■□□□ 1.04
PDGFB-203ENST00000440375 TDRD9Q8NDG6 1382 aaKnown RBP21.48■■□□□ 1.03
PDGFB-203ENST00000440375 CHD1O14646 1710 aa21.45■■□□□ 1.02
PDGFB-203ENST00000440375 RIMBP3CA6NJZ7 1639 aa21.41■■□□□ 1.02
PDGFB-203ENST00000440375 RIMBP3BA6NNM3 1639 aa21.41■■□□□ 1.02
PDGFB-203ENST00000440375 RIMBP3Q9UFD9 1639 aa21.41■■□□□ 1.02
PDGFB-203ENST00000440375 WDR97A6NE52 1622 aa21.4■■□□□ 1.02
PDGFB-203ENST00000440375 SNAPC4Q5SXM2 1469 aa21.39■■□□□ 1.02
PDGFB-203ENST00000440375 ARHGEF11O15085 1522 aa21.37■■□□□ 1.01
PDGFB-203ENST00000440375 FBLN2P98095 1184 aa21.36■■□□□ 1.01
PDGFB-203ENST00000440375 GRIN2BQ13224 1484 aa21.32■■□□□ 1
PDGFB-203ENST00000440375 MAGI1Q96QZ7 1491 aaPredicted RBP21.31■■□□□ 1
PDGFB-203ENST00000440375 ABCA10Q8WWZ4 1543 aa21.3■■□□□ 1
PDGFB-203ENST00000440375 SYNJ1O43426 1573 aa21.29■■□□□ 1
PDGFB-203ENST00000440375 GAPVD1Q14C86 1478 aa21.28■■□□□ 1
PDGFB-203ENST00000440375 ABCA5Q8WWZ7 1642 aa21.28■■□□□ 1
PDGFB-203ENST00000440375 PBRM1Q86U86 1689 aa21.28■■□□□ 1
PDGFB-203ENST00000440375 TOP2BQ02880 1626 aa21.26■□□□□ 0.99
PDGFB-203ENST00000440375 BIVM-ERCC5R4GMW8 1640 aa21.26■□□□□ 0.99
PDGFB-203ENST00000440375 WRNQ14191 1432 aaPredicted RBP eCLIP21.26■□□□□ 0.99
PDGFB-203ENST00000440375 SYNJ2O15056 1496 aa21.24■□□□□ 0.99
PDGFB-203ENST00000440375 CLASP1Q7Z460 1538 aa21.24■□□□□ 0.99
PDGFB-203ENST00000440375 CHMP7Q8WUX9 453 aaPredicted RBP21.22■□□□□ 0.99
PDGFB-203ENST00000440375 ARAP1Q96P48 1450 aa21.2■□□□□ 0.98
PDGFB-203ENST00000440375 CYB5RLQ6IPT4 315 aa21.14■□□□□ 0.97
PDGFB-203ENST00000440375 ADAMTS12P58397 1594 aa21.12■□□□□ 0.97
PDGFB-203ENST00000440375 GRIN2AQ12879 1464 aa21.07■□□□□ 0.96
PDGFB-203ENST00000440375 ERICH3Q5RHP9 1530 aa21.03■□□□□ 0.96
PDGFB-203ENST00000440375 CEP170Q5SW79 1584 aa21.02■□□□□ 0.95
PDGFB-203ENST00000440375 FHAD1B1AJZ9 1412 aa21.01■□□□□ 0.95
PDGFB-203ENST00000440375 NUP160Q12769 1436 aa21■□□□□ 0.95
PDGFB-203ENST00000440375 ERCC6L2Q5T890 1561 aa20.95■□□□□ 0.94
PDGFB-203ENST00000440375 SHROOM2Q13796 1616 aa20.88■□□□□ 0.93
PDGFB-203ENST00000440375 KIF27Q86VH2 1401 aa20.82■□□□□ 0.92
PDGFB-203ENST00000440375 TRHP20396 242 aaPredicted RBP20.82■□□□□ 0.92
PDGFB-203ENST00000440375 RUSC2Q8N2Y8 1516 aa20.82■□□□□ 0.92
PDGFB-203ENST00000440375 IGF1RP08069 1367 aa20.81■□□□□ 0.92
PDGFB-203ENST00000440375 PRG4Q92954 1404 aaPredicted RBP20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms