RNA–Protein interactions for RNA: ENST00000440271.5

TRIM39-210, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-210ENST00000440271 NISCHQ9Y2I1 1504 aa52.26■■■■■ 5.96
TRIM39-210ENST00000440271 ABCC9O60706 1549 aa47.55■■■■■ 5.2
TRIM39-210ENST00000440271 CCDC180Q9P1Z9 1646 aa47.01■■■■■ 5.12
TRIM39-210ENST00000440271 DNAJC5BQ9UF47 199 aa45.08■■■■■ 4.81
TRIM39-210ENST00000440271 RB1CC1Q8TDY2 1594 aa45.02■■■■■ 4.8
TRIM39-210ENST00000440271 NACADO15069 1562 aa44.61■■■■■ 4.73
TRIM39-210ENST00000440271 DCAF8L2P0C7V8 631 aa44.42■■■■■ 4.7
TRIM39-210ENST00000440271 PABPN1Q86U42 306 aaKnown RBP eCLIP44.27■■■■■ 4.68
TRIM39-210ENST00000440271 UNC13AQ9UPW8 1703 aa43.93■■■■■ 4.62
TRIM39-210ENST00000440271 MYO15BQ96JP2 1530 aa43.85■■■■■ 4.61
TRIM39-210ENST00000440271 BICRAQ9NZM4 1560 aa43.73■■■■■ 4.59
TRIM39-210ENST00000440271 ZCCHC6Q5VYS8 1495 aaKnown RBP43.19■■■■■ 4.5
TRIM39-210ENST00000440271 DCAF1Q9Y4B6 1507 aa43.12■■■■■ 4.49
TRIM39-210ENST00000440271 SHROOM4Q9ULL8 1493 aa43.07■■■■■ 4.49
TRIM39-210ENST00000440271 CC2D2AQ9P2K1 1620 aa42.89■■■■■ 4.46
TRIM39-210ENST00000440271 CECR2Q9BXF3 1484 aa42.88■■■■■ 4.46
TRIM39-210ENST00000440271 SCRIBQ14160 1630 aa42.84■■■■■ 4.45
TRIM39-210ENST00000440271 EIF4G1Q04637 1599 aaKnown RBP42.69■■■■■ 4.43
TRIM39-210ENST00000440271 DNAJC5Q9H3Z4 198 aa41.72■■■■■ 4.27
TRIM39-210ENST00000440271 NCAPD3P42695 1498 aa41.24■■■■■ 4.19
TRIM39-210ENST00000440271 CUX2O14529 1486 aa41.14■■■■■ 4.18
TRIM39-210ENST00000440271 ERCC6Q03468 1493 aa41.08■■■■■ 4.17
TRIM39-210ENST00000440271 ATAD2BQ9ULI0 1458 aa41.03■■■■■ 4.16
TRIM39-210ENST00000440271 SMARCA2P51531 1590 aa40.86■■■■■ 4.13
TRIM39-210ENST00000440271 SMARCA4P51532 1647 aa40.83■■■■■ 4.13
TRIM39-210ENST00000440271 HMGXB3Q12766 1538 aa40.83■■■■■ 4.13
TRIM39-210ENST00000440271 NESP48681 1621 aa40.72■■■■■ 4.11
TRIM39-210ENST00000440271 BAZ1BQ9UIG0 1483 aaKnown RBP40.59■■■■■ 4.09
TRIM39-210ENST00000440271 BAZ1AQ9NRL2 1556 aaPredicted RBP40.57■■■■■ 4.09
TRIM39-210ENST00000440271 PEG3Q9GZU2 1588 aa40.44■■■■■ 4.06
TRIM39-210ENST00000440271 THOC2Q8NI27 1593 aaKnown RBP40.32■■■■■ 4.05
TRIM39-210ENST00000440271 LAMC3Q9Y6N6 1575 aa40.31■■■■■ 4.04
TRIM39-210ENST00000440271 MROH2BQ7Z745 1585 aa40.27■■■■■ 4.04
TRIM39-210ENST00000440271 PDS5BQ9NTI5 1447 aa40.16■■■■■ 4.02
TRIM39-210ENST00000440271 KIF21AQ7Z4S6 1674 aa40.1■■■■■ 4.01
TRIM39-210ENST00000440271 CADPSQ9ULU8 1353 aa39.97■■■■□ 3.99
TRIM39-210ENST00000440271 MRC2Q9UBG0 1479 aa39.81■■■■□ 3.96
TRIM39-210ENST00000440271 WIZO95785 1651 aa39.73■■■■□ 3.95
TRIM39-210ENST00000440271 WDR62O43379 1518 aa39.7■■■■□ 3.95
TRIM39-210ENST00000440271 TRIM41Q8WV44 630 aa39.7■■■■□ 3.95
TRIM39-210ENST00000440271 CEP164Q9UPV0 1460 aa39.56■■■■□ 3.92
TRIM39-210ENST00000440271 FANCD2Q9BXW9 1451 aa39.49■■■■□ 3.91
TRIM39-210ENST00000440271 CFTRP13569 1480 aa39.4■■■■□ 3.9
TRIM39-210ENST00000440271 RSF1Q96T23 1441 aaPredicted RBP39.31■■■■□ 3.88
TRIM39-210ENST00000440271 OSCARQ8IYS5 282 aa39.28■■■■□ 3.88
TRIM39-210ENST00000440271 TOP2AP11388 1531 aaKnown RBP39.19■■■■□ 3.86
TRIM39-210ENST00000440271 URB2Q14146 1524 aaKnown RBP39.19■■■■□ 3.86
TRIM39-210ENST00000440271 PRDM2Q13029 1718 aa38.83■■■■□ 3.81
TRIM39-210ENST00000440271 CCDC88BA6NC98 1476 aa38.82■■■■□ 3.81
TRIM39-210ENST00000440271 IFT140Q96RY7 1462 aa38.8■■■■□ 3.8
TRIM39-210ENST00000440271 ZNF608Q9ULD9 1512 aaPredicted RBP38.79■■■■□ 3.8
TRIM39-210ENST00000440271 RIMBP3CA6NJZ7 1639 aa38.71■■■■□ 3.79
TRIM39-210ENST00000440271 RIMBP3BA6NNM3 1639 aa38.71■■■■□ 3.79
TRIM39-210ENST00000440271 RIMBP3Q9UFD9 1639 aa38.71■■■■□ 3.79
TRIM39-210ENST00000440271 TOPBP1Q92547 1522 aa38.68■■■■□ 3.78
TRIM39-210ENST00000440271 ABCC8Q09428 1581 aa38.58■■■■□ 3.77
TRIM39-210ENST00000440271 ARHGEF11O15085 1522 aa38.56■■■■□ 3.76
TRIM39-210ENST00000440271 EIF4G3O43432 1585 aaKnown RBP38.48■■■■□ 3.75
TRIM39-210ENST00000440271 DNMBPQ6XZF7 1577 aa38.48■■■■□ 3.75
TRIM39-210ENST00000440271 AQRO60306 1485 aaKnown RBP eCLIP38.41■■■■□ 3.744e-6■■■■■ 31
TRIM39-210ENST00000440271 CYB5RLQ6IPT4 315 aa38.4■■■■□ 3.74
TRIM39-210ENST00000440271 TARBP1Q13395 1621 aaKnown RBP38.35■■■■□ 3.73
TRIM39-210ENST00000440271 FBLN2P98095 1184 aa38.28■■■■□ 3.72
TRIM39-210ENST00000440271 CHD1O14646 1710 aa38.27■■■■□ 3.72
TRIM39-210ENST00000440271 POLA1P09884 1462 aaPredicted RBP38.26■■■■□ 3.72
TRIM39-210ENST00000440271 RAD54L2Q9Y4B4 1467 aa38.16■■■■□ 3.7
TRIM39-210ENST00000440271 ARAP1Q96P48 1450 aa38.15■■■■□ 3.7
TRIM39-210ENST00000440271 SOGA1O94964 1423 aa38.12■■■■□ 3.69
TRIM39-210ENST00000440271 TDRD9Q8NDG6 1382 aaKnown RBP38.12■■■■□ 3.69
TRIM39-210ENST00000440271 TRHP20396 242 aaPredicted RBP38.11■■■■□ 3.69
TRIM39-210ENST00000440271 SNAPC4Q5SXM2 1469 aa37.96■■■■□ 3.67
TRIM39-210ENST00000440271 FGD5Q6ZNL6 1462 aa37.96■■■■□ 3.67
TRIM39-210ENST00000440271 CHMP7Q8WUX9 453 aaPredicted RBP37.93■■■■□ 3.66
TRIM39-210ENST00000440271 WDR97A6NE52 1622 aa37.9■■■■□ 3.66
TRIM39-210ENST00000440271 CLASP1Q7Z460 1538 aa37.87■■■■□ 3.65
TRIM39-210ENST00000440271 CUX1P39880 1505 aa37.85■■■■□ 3.65
TRIM39-210ENST00000440271 MAGI1Q96QZ7 1491 aaPredicted RBP37.84■■■■□ 3.65
TRIM39-210ENST00000440271 GRIN2BQ13224 1484 aa37.81■■■■□ 3.64
TRIM39-210ENST00000440271 SYNJ1O43426 1573 aa37.8■■■■□ 3.64
TRIM39-210ENST00000440271 SYNJ2O15056 1496 aa37.73■■■■□ 3.63
TRIM39-210ENST00000440271 GAPVD1Q14C86 1478 aa37.63■■■■□ 3.61
TRIM39-210ENST00000440271 PBRM1Q86U86 1689 aa37.54■■■■□ 3.6
TRIM39-210ENST00000440271 ABCA10Q8WWZ4 1543 aa37.51■■■■□ 3.59
TRIM39-210ENST00000440271 ABCA5Q8WWZ7 1642 aa37.44■■■■□ 3.58
TRIM39-210ENST00000440271 AEBP2Q6ZN18 517 aaPredicted RBP37.32■■■■□ 3.56
TRIM39-210ENST00000440271 GRIN2AQ12879 1464 aa37.32■■■■□ 3.56
TRIM39-210ENST00000440271 WRNQ14191 1432 aaPredicted RBP eCLIP37.29■■■■□ 3.56
TRIM39-210ENST00000440271 SUPT5HO00267 1087 aaKnown RBP37.28■■■■□ 3.56
TRIM39-210ENST00000440271 ERCC6L2Q5T890 1561 aa37.26■■■■□ 3.56
TRIM39-210ENST00000440271 NUP160Q12769 1436 aa37.22■■■■□ 3.55
TRIM39-210ENST00000440271 ADAMTS12P58397 1594 aa37.19■■■■□ 3.54
TRIM39-210ENST00000440271 CEP170Q5SW79 1584 aa37.18■■■■□ 3.54
TRIM39-210ENST00000440271 FHAD1B1AJZ9 1412 aa37.13■■■■□ 3.53
TRIM39-210ENST00000440271 TOP2BQ02880 1626 aa37.1■■■■□ 3.53
TRIM39-210ENST00000440271 BIVM-ERCC5R4GMW8 1640 aa37.08■■■■□ 3.53
TRIM39-210ENST00000440271 SHROOM2Q13796 1616 aa37.06■■■■□ 3.52
TRIM39-210ENST00000440271 ERICH3Q5RHP9 1530 aa37.01■■■■□ 3.52
TRIM39-210ENST00000440271 PRG4Q92954 1404 aaPredicted RBP36.93■■■■□ 3.5
TRIM39-210ENST00000440271 JPH4Q96JJ6 628 aa36.91■■■■□ 3.5
TRIM39-210ENST00000440271 KIF13AQ9H1H9 1805 aa36.78■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms