RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 NISCHQ9Y2I1 1504 aa48.86■■■■■ 5.41
SHROOM1-204ENST00000440118 CCDC180Q9P1Z9 1646 aa43.77■■■■■ 4.6
SHROOM1-204ENST00000440118 ABCC9O60706 1549 aa43.24■■■■■ 4.51
SHROOM1-204ENST00000440118 RB1CC1Q8TDY2 1594 aa41.42■■■■■ 4.22
SHROOM1-204ENST00000440118 NACADO15069 1562 aa41.2■■■■■ 4.19
SHROOM1-204ENST00000440118 DCAF8L2P0C7V8 631 aa41.12■■■■■ 4.17
SHROOM1-204ENST00000440118 MYO15BQ96JP2 1530 aa40.71■■■■■ 4.11
SHROOM1-204ENST00000440118 ZCCHC6Q5VYS8 1495 aaKnown RBP40.62■■■■■ 4.09
SHROOM1-204ENST00000440118 UNC13AQ9UPW8 1703 aa40.51■■■■■ 4.08
SHROOM1-204ENST00000440118 DCAF1Q9Y4B6 1507 aa40.37■■■■■ 4.05
SHROOM1-204ENST00000440118 PABPN1Q86U42 306 aaKnown RBP eCLIP40.27■■■■■ 4.04
SHROOM1-204ENST00000440118 DNAJC5BQ9UF47 199 aa40.1■■■■■ 4.01
SHROOM1-204ENST00000440118 BICRAQ9NZM4 1560 aa40.07■■■■■ 4.01
SHROOM1-204ENST00000440118 SCRIBQ14160 1630 aa39.93■■■■□ 3.98
SHROOM1-204ENST00000440118 SHROOM4Q9ULL8 1493 aa39.65■■■■□ 3.94
SHROOM1-204ENST00000440118 EIF4G1Q04637 1599 aaKnown RBP39.12■■■■□ 3.85
SHROOM1-204ENST00000440118 CC2D2AQ9P2K1 1620 aa39.11■■■■□ 3.85
SHROOM1-204ENST00000440118 CECR2Q9BXF3 1484 aa38.9■■■■□ 3.82
SHROOM1-204ENST00000440118 SMARCA4P51532 1647 aa38.09■■■■□ 3.69
SHROOM1-204ENST00000440118 BAZ1AQ9NRL2 1556 aaPredicted RBP37.97■■■■□ 3.67
SHROOM1-204ENST00000440118 SMARCA2P51531 1590 aa37.93■■■■□ 3.66
SHROOM1-204ENST00000440118 NCAPD3P42695 1498 aa37.93■■■■□ 3.66
SHROOM1-204ENST00000440118 ATAD2BQ9ULI0 1458 aa37.91■■■■□ 3.66
SHROOM1-204ENST00000440118 HMGXB3Q12766 1538 aa37.8■■■■□ 3.64
SHROOM1-204ENST00000440118 BAZ1BQ9UIG0 1483 aaKnown RBP37.68■■■■□ 3.62
SHROOM1-204ENST00000440118 MROH2BQ7Z745 1585 aa37.65■■■■□ 3.62
SHROOM1-204ENST00000440118 PEG3Q9GZU2 1588 aa37.64■■■■□ 3.62
SHROOM1-204ENST00000440118 ERCC6Q03468 1493 aa37.39■■■■□ 3.58
SHROOM1-204ENST00000440118 WIZO95785 1651 aa37.3■■■■□ 3.56
SHROOM1-204ENST00000440118 NESP48681 1621 aa37.24■■■■□ 3.55
SHROOM1-204ENST00000440118 LAMC3Q9Y6N6 1575 aa37.12■■■■□ 3.53
SHROOM1-204ENST00000440118 CUX2O14529 1486 aa37.07■■■■□ 3.53
SHROOM1-204ENST00000440118 RSF1Q96T23 1441 aaPredicted RBP37.01■■■■□ 3.51
SHROOM1-204ENST00000440118 KIF21AQ7Z4S6 1674 aa36.9■■■■□ 3.5
SHROOM1-204ENST00000440118 PDS5BQ9NTI5 1447 aa36.87■■■■□ 3.49
SHROOM1-204ENST00000440118 TOP2AP11388 1531 aaKnown RBP36.86■■■■□ 3.49
SHROOM1-204ENST00000440118 CADPSQ9ULU8 1353 aa36.83■■■■□ 3.49
SHROOM1-204ENST00000440118 THOC2Q8NI27 1593 aaKnown RBP36.83■■■■□ 3.49
SHROOM1-204ENST00000440118 DNAJC5Q9H3Z4 198 aa36.61■■■■□ 3.45
SHROOM1-204ENST00000440118 MRC2Q9UBG0 1479 aa36.54■■■■□ 3.44
SHROOM1-204ENST00000440118 CEP164Q9UPV0 1460 aa36.52■■■■□ 3.44
SHROOM1-204ENST00000440118 CFTRP13569 1480 aa36.5■■■■□ 3.43
SHROOM1-204ENST00000440118 FANCD2Q9BXW9 1451 aa36.47■■■■□ 3.43
SHROOM1-204ENST00000440118 WDR62O43379 1518 aa36.42■■■■□ 3.42
SHROOM1-204ENST00000440118 PRDM2Q13029 1718 aa36.41■■■■□ 3.42
SHROOM1-204ENST00000440118 CCDC88BA6NC98 1476 aa36.36■■■■□ 3.41
SHROOM1-204ENST00000440118 URB2Q14146 1524 aaKnown RBP36.11■■■■□ 3.37
SHROOM1-204ENST00000440118 SUPT5HO00267 1087 aaKnown RBP35.83■■■■□ 3.33
SHROOM1-204ENST00000440118 TOPBP1Q92547 1522 aa35.83■■■■□ 3.33
SHROOM1-204ENST00000440118 ABCC8Q09428 1581 aa35.81■■■■□ 3.32
SHROOM1-204ENST00000440118 DNMBPQ6XZF7 1577 aa35.79■■■■□ 3.32
SHROOM1-204ENST00000440118 IFT140Q96RY7 1462 aa35.73■■■■□ 3.31
SHROOM1-204ENST00000440118 ZNF608Q9ULD9 1512 aaPredicted RBP35.58■■■■□ 3.29
SHROOM1-204ENST00000440118 EIF4G3O43432 1585 aaKnown RBP35.52■■■■□ 3.28
SHROOM1-204ENST00000440118 POLA1P09884 1462 aaPredicted RBP35.48■■■■□ 3.27
SHROOM1-204ENST00000440118 TARBP1Q13395 1621 aaKnown RBP35.46■■■■□ 3.27
SHROOM1-204ENST00000440118 OSCARQ8IYS5 282 aa35.41■■■■□ 3.26
SHROOM1-204ENST00000440118 CUX1P39880 1505 aa35.37■■■■□ 3.25
SHROOM1-204ENST00000440118 FGD5Q6ZNL6 1462 aa35.36■■■■□ 3.25
SHROOM1-204ENST00000440118 RAD54L2Q9Y4B4 1467 aa35.34■■■■□ 3.25
SHROOM1-204ENST00000440118 SOGA1O94964 1423 aa35.32■■■■□ 3.25
SHROOM1-204ENST00000440118 AQRO60306 1485 aaKnown RBP eCLIP35.32■■■■□ 3.241e-7■■■■■ 31.6
SHROOM1-204ENST00000440118 CHD1O14646 1710 aa35.21■■■■□ 3.23
SHROOM1-204ENST00000440118 WDR97A6NE52 1622 aa35.21■■■■□ 3.23
SHROOM1-204ENST00000440118 TDRD9Q8NDG6 1382 aaKnown RBP35.18■■■■□ 3.22
SHROOM1-204ENST00000440118 TRIM41Q8WV44 630 aa35.15■■■■□ 3.22
SHROOM1-204ENST00000440118 FBLN2P98095 1184 aa35.08■■■■□ 3.21
SHROOM1-204ENST00000440118 SNAPC4Q5SXM2 1469 aa35.04■■■■□ 3.2
SHROOM1-204ENST00000440118 PBRM1Q86U86 1689 aa35.01■■■■□ 3.2
SHROOM1-204ENST00000440118 BIVM-ERCC5R4GMW8 1640 aa34.99■■■■□ 3.19
SHROOM1-204ENST00000440118 GRIN2BQ13224 1484 aa34.99■■■■□ 3.19
SHROOM1-204ENST00000440118 RIMBP3CA6NJZ7 1639 aa34.99■■■■□ 3.19
SHROOM1-204ENST00000440118 RIMBP3BA6NNM3 1639 aa34.99■■■■□ 3.19
SHROOM1-204ENST00000440118 RIMBP3Q9UFD9 1639 aa34.99■■■■□ 3.19
SHROOM1-204ENST00000440118 WRNQ14191 1432 aaPredicted RBP eCLIP34.98■■■■□ 3.19
SHROOM1-204ENST00000440118 TOP2BQ02880 1626 aa34.98■■■■□ 3.19
SHROOM1-204ENST00000440118 MAGI1Q96QZ7 1491 aaPredicted RBP34.97■■■■□ 3.19
SHROOM1-204ENST00000440118 ABCA10Q8WWZ4 1543 aa34.95■■■■□ 3.19
SHROOM1-204ENST00000440118 SYNJ1O43426 1573 aa34.95■■■■□ 3.18
SHROOM1-204ENST00000440118 GAPVD1Q14C86 1478 aa34.93■■■■□ 3.18
SHROOM1-204ENST00000440118 ABCA5Q8WWZ7 1642 aa34.91■■■■□ 3.18
SHROOM1-204ENST00000440118 ARHGEF11O15085 1522 aa34.9■■■■□ 3.18
SHROOM1-204ENST00000440118 CHMP7Q8WUX9 453 aaPredicted RBP34.87■■■■□ 3.17
SHROOM1-204ENST00000440118 SYNJ2O15056 1496 aa34.83■■■■□ 3.17
SHROOM1-204ENST00000440118 CLASP1Q7Z460 1538 aa34.7■■■■□ 3.14
SHROOM1-204ENST00000440118 ADAMTS12P58397 1594 aa34.64■■■■□ 3.14
SHROOM1-204ENST00000440118 CYB5RLQ6IPT4 315 aa34.57■■■■□ 3.12
SHROOM1-204ENST00000440118 ERICH3Q5RHP9 1530 aa34.55■■■■□ 3.12
SHROOM1-204ENST00000440118 GRIN2AQ12879 1464 aa34.55■■■■□ 3.12
SHROOM1-204ENST00000440118 ARAP1Q96P48 1450 aa34.55■■■■□ 3.12
SHROOM1-204ENST00000440118 FHAD1B1AJZ9 1412 aa34.49■■■■□ 3.11
SHROOM1-204ENST00000440118 CEP170Q5SW79 1584 aa34.4■■■■□ 3.1
SHROOM1-204ENST00000440118 NUP160Q12769 1436 aa34.36■■■■□ 3.09
SHROOM1-204ENST00000440118 KIF27Q86VH2 1401 aa34.31■■■■□ 3.08
SHROOM1-204ENST00000440118 CUL7Q14999 1698 aa34.23■■■■□ 3.07
SHROOM1-204ENST00000440118 SHROOM2Q13796 1616 aa34.21■■■■□ 3.07
SHROOM1-204ENST00000440118 ERCC6L2Q5T890 1561 aa34.18■■■■□ 3.06
SHROOM1-204ENST00000440118 RUSC2Q8N2Y8 1516 aa34.14■■■■□ 3.06
SHROOM1-204ENST00000440118 TRHP20396 242 aaPredicted RBP34.13■■■■□ 3.05
SHROOM1-204ENST00000440118 IGF1RP08069 1367 aa34.11■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms