RNA–Protein interactions for RNA: ENST00000439619.6

CCDC78-204, Transcript of coiled-coil domain containing 78, humanhuman

TSL 2

Gene CCDC78, Length 1,064 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-204ENST00000439619 NISCHQ9Y2I1 1504 aa46.31■■■■■ 5
CCDC78-204ENST00000439619 CCDC180Q9P1Z9 1646 aa41.39■■■■■ 4.22
CCDC78-204ENST00000439619 ABCC9O60706 1549 aa41.1■■■■■ 4.17
CCDC78-204ENST00000439619 RB1CC1Q8TDY2 1594 aa39.31■■■■□ 3.88
CCDC78-204ENST00000439619 NACADO15069 1562 aa39.12■■■■□ 3.85
CCDC78-204ENST00000439619 DCAF8L2P0C7V8 631 aa39.1■■■■□ 3.85
CCDC78-204ENST00000439619 MYO15BQ96JP2 1530 aa38.69■■■■□ 3.78
CCDC78-204ENST00000439619 ZCCHC6Q5VYS8 1495 aaKnown RBP38.44■■■■□ 3.74
CCDC78-204ENST00000439619 PABPN1Q86U42 306 aaKnown RBP eCLIP38.34■■■■□ 3.73
CCDC78-204ENST00000439619 DCAF1Q9Y4B6 1507 aa38.31■■■■□ 3.72
CCDC78-204ENST00000439619 DNAJC5BQ9UF47 199 aa38.17■■■■□ 3.7
CCDC78-204ENST00000439619 UNC13AQ9UPW8 1703 aa38.17■■■■□ 3.7
CCDC78-204ENST00000439619 BICRAQ9NZM4 1560 aa38■■■■□ 3.67
CCDC78-204ENST00000439619 SCRIBQ14160 1630 aa37.72■■■■□ 3.63
CCDC78-204ENST00000439619 SHROOM4Q9ULL8 1493 aa37.72■■■■□ 3.63
CCDC78-204ENST00000439619 EIF4G1Q04637 1599 aaKnown RBP37.12■■■■□ 3.53
CCDC78-204ENST00000439619 CC2D2AQ9P2K1 1620 aa37.1■■■■□ 3.53
CCDC78-204ENST00000439619 CECR2Q9BXF3 1484 aa37.02■■■■□ 3.52
CCDC78-204ENST00000439619 NCAPD3P42695 1498 aa36.11■■■■□ 3.37
CCDC78-204ENST00000439619 SMARCA4P51532 1647 aa36.02■■■■□ 3.36
CCDC78-204ENST00000439619 ATAD2BQ9ULI0 1458 aa36.02■■■■□ 3.36
CCDC78-204ENST00000439619 SMARCA2P51531 1590 aa35.99■■■■□ 3.35
CCDC78-204ENST00000439619 BAZ1AQ9NRL2 1556 aaPredicted RBP35.98■■■■□ 3.35
CCDC78-204ENST00000439619 HMGXB3Q12766 1538 aa35.85■■■■□ 3.33
CCDC78-204ENST00000439619 BAZ1BQ9UIG0 1483 aaKnown RBP35.74■■■■□ 3.31
CCDC78-204ENST00000439619 PEG3Q9GZU2 1588 aa35.68■■■■□ 3.3
CCDC78-204ENST00000439619 MROH2BQ7Z745 1585 aa35.64■■■■□ 3.3
CCDC78-204ENST00000439619 ERCC6Q03468 1493 aa35.57■■■■□ 3.28
CCDC78-204ENST00000439619 CUX2O14529 1486 aa35.35■■■■□ 3.25
CCDC78-204ENST00000439619 NESP48681 1621 aa35.34■■■■□ 3.25
CCDC78-204ENST00000439619 LAMC3Q9Y6N6 1575 aa35.24■■■■□ 3.23
CCDC78-204ENST00000439619 WIZO95785 1651 aa35.19■■■■□ 3.22
CCDC78-204ENST00000439619 PDS5BQ9NTI5 1447 aa35.11■■■■□ 3.21
CCDC78-204ENST00000439619 RSF1Q96T23 1441 aaPredicted RBP35.07■■■■□ 3.21
CCDC78-204ENST00000439619 CADPSQ9ULU8 1353 aa35.05■■■■□ 3.2
CCDC78-204ENST00000439619 DNAJC5Q9H3Z4 198 aa34.94■■■■□ 3.18
CCDC78-204ENST00000439619 THOC2Q8NI27 1593 aaKnown RBP34.9■■■■□ 3.18
CCDC78-204ENST00000439619 TOP2AP11388 1531 aaKnown RBP34.86■■■■□ 3.17
CCDC78-204ENST00000439619 KIF21AQ7Z4S6 1674 aa34.85■■■■□ 3.17
CCDC78-204ENST00000439619 MRC2Q9UBG0 1479 aa34.71■■■■□ 3.15
CCDC78-204ENST00000439619 CFTRP13569 1480 aa34.69■■■■□ 3.14
CCDC78-204ENST00000439619 CEP164Q9UPV0 1460 aa34.66■■■■□ 3.14
CCDC78-204ENST00000439619 FANCD2Q9BXW9 1451 aa34.64■■■■□ 3.14
CCDC78-204ENST00000439619 WDR62O43379 1518 aa34.57■■■■□ 3.12
CCDC78-204ENST00000439619 CCDC88BA6NC98 1476 aa34.46■■■■□ 3.11
CCDC78-204ENST00000439619 URB2Q14146 1524 aaKnown RBP34.25■■■■□ 3.07
CCDC78-204ENST00000439619 PRDM2Q13029 1718 aa34.24■■■■□ 3.07
CCDC78-204ENST00000439619 ABCC8Q09428 1581 aa34.05■■■■□ 3.04
CCDC78-204ENST00000439619 TOPBP1Q92547 1522 aa33.98■■■■□ 3.03
CCDC78-204ENST00000439619 IFT140Q96RY7 1462 aa33.97■■■■□ 3.03
CCDC78-204ENST00000439619 DNMBPQ6XZF7 1577 aa33.89■■■■□ 3.02
CCDC78-204ENST00000439619 SUPT5HO00267 1087 aaKnown RBP33.87■■■■□ 3.01
CCDC78-204ENST00000439619 OSCARQ8IYS5 282 aa33.85■■■■□ 3.01
CCDC78-204ENST00000439619 ZNF608Q9ULD9 1512 aaPredicted RBP33.77■■■■□ 3
CCDC78-204ENST00000439619 POLA1P09884 1462 aaPredicted RBP33.65■■■□□ 2.98
CCDC78-204ENST00000439619 EIF4G3O43432 1585 aaKnown RBP33.61■■■□□ 2.97
CCDC78-204ENST00000439619 TARBP1Q13395 1621 aaKnown RBP33.6■■■□□ 2.97
CCDC78-204ENST00000439619 TRIM41Q8WV44 630 aa33.59■■■□□ 2.97
CCDC78-204ENST00000439619 SOGA1O94964 1423 aa33.57■■■□□ 2.96
CCDC78-204ENST00000439619 AQRO60306 1485 aaKnown RBP eCLIP33.56■■■□□ 2.96
CCDC78-204ENST00000439619 RAD54L2Q9Y4B4 1467 aa33.5■■■□□ 2.95
CCDC78-204ENST00000439619 FGD5Q6ZNL6 1462 aa33.5■■■□□ 2.95
CCDC78-204ENST00000439619 CUX1P39880 1505 aa33.48■■■□□ 2.95
CCDC78-204ENST00000439619 TDRD9Q8NDG6 1382 aaKnown RBP33.43■■■□□ 2.94
CCDC78-204ENST00000439619 FBLN2P98095 1184 aa33.4■■■□□ 2.94
CCDC78-204ENST00000439619 WDR97A6NE52 1622 aa33.39■■■□□ 2.93
CCDC78-204ENST00000439619 GRIN2BQ13224 1484 aa33.25■■■□□ 2.91
CCDC78-204ENST00000439619 SNAPC4Q5SXM2 1469 aa33.24■■■□□ 2.91
CCDC78-204ENST00000439619 CHD1O14646 1710 aa33.23■■■□□ 2.91
CCDC78-204ENST00000439619 CHMP7Q8WUX9 453 aaPredicted RBP33.22■■■□□ 2.91
CCDC78-204ENST00000439619 MAGI1Q96QZ7 1491 aaPredicted RBP33.21■■■□□ 2.91
CCDC78-204ENST00000439619 RIMBP3CA6NJZ7 1639 aa33.2■■■□□ 2.91
CCDC78-204ENST00000439619 RIMBP3BA6NNM3 1639 aa33.2■■■□□ 2.91
CCDC78-204ENST00000439619 RIMBP3Q9UFD9 1639 aa33.2■■■□□ 2.91
CCDC78-204ENST00000439619 ARHGEF11O15085 1522 aa33.19■■■□□ 2.9
CCDC78-204ENST00000439619 WRNQ14191 1432 aaPredicted RBP eCLIP33.17■■■□□ 2.9
CCDC78-204ENST00000439619 GAPVD1Q14C86 1478 aa33.16■■■□□ 2.9
CCDC78-204ENST00000439619 ABCA10Q8WWZ4 1543 aa33.16■■■□□ 2.9
CCDC78-204ENST00000439619 SYNJ2O15056 1496 aa33.08■■■□□ 2.89
CCDC78-204ENST00000439619 TOP2BQ02880 1626 aa33.06■■■□□ 2.88
CCDC78-204ENST00000439619 SYNJ1O43426 1573 aa33.03■■■□□ 2.88
CCDC78-204ENST00000439619 BIVM-ERCC5R4GMW8 1640 aa33.02■■■□□ 2.88
CCDC78-204ENST00000439619 CYB5RLQ6IPT4 315 aa33.01■■■□□ 2.87
CCDC78-204ENST00000439619 ABCA5Q8WWZ7 1642 aa33■■■□□ 2.87
CCDC78-204ENST00000439619 PBRM1Q86U86 1689 aa33■■■□□ 2.87
CCDC78-204ENST00000439619 CLASP1Q7Z460 1538 aa32.92■■■□□ 2.86
CCDC78-204ENST00000439619 ARAP1Q96P48 1450 aa32.86■■■□□ 2.85
CCDC78-204ENST00000439619 GRIN2AQ12879 1464 aa32.79■■■□□ 2.84
CCDC78-204ENST00000439619 FHAD1B1AJZ9 1412 aa32.77■■■□□ 2.84
CCDC78-204ENST00000439619 ERICH3Q5RHP9 1530 aa32.77■■■□□ 2.84
CCDC78-204ENST00000439619 ADAMTS12P58397 1594 aa32.75■■■□□ 2.83
CCDC78-204ENST00000439619 NUP160Q12769 1436 aa32.64■■■□□ 2.82
CCDC78-204ENST00000439619 TRHP20396 242 aaPredicted RBP32.6■■■□□ 2.81
CCDC78-204ENST00000439619 CEP170Q5SW79 1584 aa32.58■■■□□ 2.81
CCDC78-204ENST00000439619 KIF27Q86VH2 1401 aa32.54■■■□□ 2.8
CCDC78-204ENST00000439619 IGF1RP08069 1367 aa32.41■■■□□ 2.78
CCDC78-204ENST00000439619 SHROOM2Q13796 1616 aa32.4■■■□□ 2.78
CCDC78-204ENST00000439619 JPH4Q96JJ6 628 aa32.39■■■□□ 2.78
CCDC78-204ENST00000439619 ERCC6L2Q5T890 1561 aa32.36■■■□□ 2.77
CCDC78-204ENST00000439619 PRG4Q92954 1404 aaPredicted RBP32.34■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 247.4 ms