RNA–Protein interactions for RNA: ENST00000439555.2

IRF1-204, Transcript of interferon regulatory factor 1, humanhuman

TSL 5

Gene IRF1, Length 524 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IRF1-204ENST00000439555 NISCHQ9Y2I1 1504 aa28.44■■■□□ 2.14
IRF1-204ENST00000439555 ABCC9O60706 1549 aa26.11■■□□□ 1.77
IRF1-204ENST00000439555 CCDC180Q9P1Z9 1646 aa25.83■■□□□ 1.73
IRF1-204ENST00000439555 DNAJC5BQ9UF47 199 aa24.97■■□□□ 1.59
IRF1-204ENST00000439555 RB1CC1Q8TDY2 1594 aa24.77■■□□□ 1.56
IRF1-204ENST00000439555 NACADO15069 1562 aa24.51■■□□□ 1.51
IRF1-204ENST00000439555 UNC13AQ9UPW8 1703 aa24.27■■□□□ 1.48
IRF1-204ENST00000439555 PABPN1Q86U42 306 aaKnown RBP eCLIP24.21■■□□□ 1.47
IRF1-204ENST00000439555 DCAF8L2P0C7V8 631 aa24.09■■□□□ 1.45
IRF1-204ENST00000439555 MYO15BQ96JP2 1530 aa24.08■■□□□ 1.45
IRF1-204ENST00000439555 BICRAQ9NZM4 1560 aa24.05■■□□□ 1.44
IRF1-204ENST00000439555 SHROOM4Q9ULL8 1493 aa23.76■■□□□ 1.39
IRF1-204ENST00000439555 CC2D2AQ9P2K1 1620 aa23.66■■□□□ 1.38
IRF1-204ENST00000439555 CECR2Q9BXF3 1484 aa23.62■■□□□ 1.37
IRF1-204ENST00000439555 DCAF1Q9Y4B6 1507 aa23.55■■□□□ 1.36
IRF1-204ENST00000439555 ZCCHC6Q5VYS8 1495 aaKnown RBP23.55■■□□□ 1.36
IRF1-204ENST00000439555 EIF4G1Q04637 1599 aaKnown RBP23.48■■□□□ 1.35
IRF1-204ENST00000439555 DNAJC5Q9H3Z4 198 aa23.39■■□□□ 1.33
IRF1-204ENST00000439555 SCRIBQ14160 1630 aa23.32■■□□□ 1.32
IRF1-204ENST00000439555 CUX2O14529 1486 aa22.84■■□□□ 1.25
IRF1-204ENST00000439555 NCAPD3P42695 1498 aa22.62■■□□□ 1.21
IRF1-204ENST00000439555 ERCC6Q03468 1493 aa22.6■■□□□ 1.21
IRF1-204ENST00000439555 ATAD2BQ9ULI0 1458 aa22.42■■□□□ 1.18
IRF1-204ENST00000439555 HMGXB3Q12766 1538 aa22.4■■□□□ 1.18
IRF1-204ENST00000439555 SMARCA2P51531 1590 aa22.38■■□□□ 1.17
IRF1-204ENST00000439555 NESP48681 1621 aa22.29■■□□□ 1.16
IRF1-204ENST00000439555 SMARCA4P51532 1647 aa22.29■■□□□ 1.16
IRF1-204ENST00000439555 THOC2Q8NI27 1593 aaKnown RBP22.25■■□□□ 1.15
IRF1-204ENST00000439555 LAMC3Q9Y6N6 1575 aa22.21■■□□□ 1.15
IRF1-204ENST00000439555 PEG3Q9GZU2 1588 aa22.16■■□□□ 1.14
IRF1-204ENST00000439555 BAZ1BQ9UIG0 1483 aaKnown RBP22.15■■□□□ 1.14
IRF1-204ENST00000439555 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
IRF1-204ENST00000439555 KIF21AQ7Z4S6 1674 aa22.09■■□□□ 1.13
IRF1-204ENST00000439555 PDS5BQ9NTI5 1447 aa22.06■■□□□ 1.12
IRF1-204ENST00000439555 TRIM41Q8WV44 630 aa22■■□□□ 1.11
IRF1-204ENST00000439555 CADPSQ9ULU8 1353 aa21.87■■□□□ 1.09
IRF1-204ENST00000439555 MROH2BQ7Z745 1585 aa21.85■■□□□ 1.09
IRF1-204ENST00000439555 WDR62O43379 1518 aa21.85■■□□□ 1.09
IRF1-204ENST00000439555 MRC2Q9UBG0 1479 aa21.84■■□□□ 1.09
IRF1-204ENST00000439555 OSCARQ8IYS5 282 aa21.71■■□□□ 1.07
IRF1-204ENST00000439555 CEP164Q9UPV0 1460 aa21.65■■□□□ 1.06
IRF1-204ENST00000439555 WIZO95785 1651 aa21.6■■□□□ 1.05
IRF1-204ENST00000439555 FANCD2Q9BXW9 1451 aa21.58■■□□□ 1.04
IRF1-204ENST00000439555 CFTRP13569 1480 aa21.52■■□□□ 1.04
IRF1-204ENST00000439555 RSF1Q96T23 1441 aaPredicted RBP21.51■■□□□ 1.03
IRF1-204ENST00000439555 RIMBP3CA6NJZ7 1639 aa21.44■■□□□ 1.02
IRF1-204ENST00000439555 RIMBP3BA6NNM3 1639 aa21.44■■□□□ 1.02
IRF1-204ENST00000439555 RIMBP3Q9UFD9 1639 aa21.44■■□□□ 1.02
IRF1-204ENST00000439555 URB2Q14146 1524 aaKnown RBP21.43■■□□□ 1.02
IRF1-204ENST00000439555 PRDM2Q13029 1718 aa21.39■■□□□ 1.01
IRF1-204ENST00000439555 TOP2AP11388 1531 aaKnown RBP21.32■■□□□ 1
IRF1-204ENST00000439555 ARHGEF11O15085 1522 aa21.3■■□□□ 1
IRF1-204ENST00000439555 IFT140Q96RY7 1462 aa21.27■■□□□ 1
IRF1-204ENST00000439555 ZNF608Q9ULD9 1512 aaPredicted RBP21.21■□□□□ 0.99
IRF1-204ENST00000439555 ABCC8Q09428 1581 aa21.17■□□□□ 0.98
IRF1-204ENST00000439555 CYB5RLQ6IPT4 315 aa21.15■□□□□ 0.98
IRF1-204ENST00000439555 TOPBP1Q92547 1522 aa21.13■□□□□ 0.97
IRF1-204ENST00000439555 EIF4G3O43432 1585 aaKnown RBP21.11■□□□□ 0.97
IRF1-204ENST00000439555 CHD1O14646 1710 aa21.1■□□□□ 0.97
IRF1-204ENST00000439555 CCDC88BA6NC98 1476 aa21.1■□□□□ 0.97
IRF1-204ENST00000439555 TRHP20396 242 aaPredicted RBP21.05■□□□□ 0.96
IRF1-204ENST00000439555 DNMBPQ6XZF7 1577 aa21.03■□□□□ 0.96
IRF1-204ENST00000439555 ARAP1Q96P48 1450 aa21.03■□□□□ 0.96
IRF1-204ENST00000439555 TARBP1Q13395 1621 aaKnown RBP21.03■□□□□ 0.96
IRF1-204ENST00000439555 AQRO60306 1485 aaKnown RBP eCLIP20.97■□□□□ 0.958e-7■■■□□ 16.1
IRF1-204ENST00000439555 FBLN2P98095 1184 aa20.89■□□□□ 0.93
IRF1-204ENST00000439555 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
IRF1-204ENST00000439555 WDR97A6NE52 1622 aa20.86■□□□□ 0.93
IRF1-204ENST00000439555 AEBP2Q6ZN18 517 aaPredicted RBP20.84■□□□□ 0.93
IRF1-204ENST00000439555 CLASP1Q7Z460 1538 aa20.83■□□□□ 0.92
IRF1-204ENST00000439555 SOGA1O94964 1423 aa20.78■□□□□ 0.92
IRF1-204ENST00000439555 SYNJ1O43426 1573 aa20.78■□□□□ 0.92
IRF1-204ENST00000439555 RAD54L2Q9Y4B4 1467 aa20.76■□□□□ 0.91
IRF1-204ENST00000439555 TDRD9Q8NDG6 1382 aaKnown RBP20.75■□□□□ 0.91
IRF1-204ENST00000439555 MAGI1Q96QZ7 1491 aaPredicted RBP20.75■□□□□ 0.91
IRF1-204ENST00000439555 CHMP7Q8WUX9 453 aaPredicted RBP20.74■□□□□ 0.91
IRF1-204ENST00000439555 SNAPC4Q5SXM2 1469 aa20.73■□□□□ 0.91
IRF1-204ENST00000439555 GRIN2BQ13224 1484 aa20.67■□□□□ 0.9
IRF1-204ENST00000439555 SYNJ2O15056 1496 aa20.66■□□□□ 0.9
IRF1-204ENST00000439555 FGD5Q6ZNL6 1462 aa20.65■□□□□ 0.9
IRF1-204ENST00000439555 SUPT5HO00267 1087 aaKnown RBP20.64■□□□□ 0.89
IRF1-204ENST00000439555 GAPVD1Q14C86 1478 aa20.61■□□□□ 0.89
IRF1-204ENST00000439555 PBRM1Q86U86 1689 aa20.59■□□□□ 0.89
IRF1-204ENST00000439555 CUX1P39880 1505 aa20.56■□□□□ 0.88
IRF1-204ENST00000439555 ABCA5Q8WWZ7 1642 aa20.45■□□□□ 0.87
IRF1-204ENST00000439555 ABCA10Q8WWZ4 1543 aa20.44■□□□□ 0.86
IRF1-204ENST00000439555 KIF13AQ9H1H9 1805 aa20.41■□□□□ 0.86
IRF1-204ENST00000439555 ERCC6L2Q5T890 1561 aa20.39■□□□□ 0.85
IRF1-204ENST00000439555 GRIN2AQ12879 1464 aa20.39■□□□□ 0.85
IRF1-204ENST00000439555 SHROOM2Q13796 1616 aa20.38■□□□□ 0.85
IRF1-204ENST00000439555 CEP170Q5SW79 1584 aa20.38■□□□□ 0.85
IRF1-204ENST00000439555 NUP160Q12769 1436 aa20.36■□□□□ 0.85
IRF1-204ENST00000439555 ADAMTS12P58397 1594 aa20.3■□□□□ 0.84
IRF1-204ENST00000439555 WRNQ14191 1432 aaPredicted RBP eCLIP20.3■□□□□ 0.84
IRF1-204ENST00000439555 FHAD1B1AJZ9 1412 aa20.25■□□□□ 0.83
IRF1-204ENST00000439555 TOP2BQ02880 1626 aa20.21■□□□□ 0.83
IRF1-204ENST00000439555 ERICH3Q5RHP9 1530 aa20.21■□□□□ 0.83
IRF1-204ENST00000439555 BIVM-ERCC5R4GMW8 1640 aa20.19■□□□□ 0.82
IRF1-204ENST00000439555 ABCC10Q5T3U5 1492 aa20.18■□□□□ 0.82
IRF1-204ENST00000439555 JPH4Q96JJ6 628 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms