RNA–Protein interactions for RNA: ENST00000439518.5

NCKIPSD-206, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 1 (best)

Gene NCKIPSD, Length 1,214 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-206ENST00000439518 NISCHQ9Y2I1 1504 aa50.46■■■■■ 5.67
NCKIPSD-206ENST00000439518 CCDC180Q9P1Z9 1646 aa45.09■■■■■ 4.81
NCKIPSD-206ENST00000439518 ABCC9O60706 1549 aa44.75■■■■■ 4.76
NCKIPSD-206ENST00000439518 RB1CC1Q8TDY2 1594 aa42.76■■■■■ 4.44
NCKIPSD-206ENST00000439518 NACADO15069 1562 aa42.58■■■■■ 4.41
NCKIPSD-206ENST00000439518 DCAF8L2P0C7V8 631 aa42.38■■■■■ 4.37
NCKIPSD-206ENST00000439518 MYO15BQ96JP2 1530 aa42.15■■■■■ 4.34
NCKIPSD-206ENST00000439518 ZCCHC6Q5VYS8 1495 aaKnown RBP41.9■■■■■ 4.3
NCKIPSD-206ENST00000439518 UNC13AQ9UPW8 1703 aa41.75■■■■■ 4.27
NCKIPSD-206ENST00000439518 PABPN1Q86U42 306 aaKnown RBP eCLIP41.74■■■■■ 4.27
NCKIPSD-206ENST00000439518 DCAF1Q9Y4B6 1507 aa41.74■■■■■ 4.27
NCKIPSD-206ENST00000439518 DNAJC5BQ9UF47 199 aa41.73■■■■■ 4.27
NCKIPSD-206ENST00000439518 BICRAQ9NZM4 1560 aa41.54■■■■■ 4.24
NCKIPSD-206ENST00000439518 SCRIBQ14160 1630 aa41.09■■■■■ 4.17
NCKIPSD-206ENST00000439518 SHROOM4Q9ULL8 1493 aa41.02■■■■■ 4.16
NCKIPSD-206ENST00000439518 EIF4G1Q04637 1599 aaKnown RBP40.46■■■■■ 4.07
NCKIPSD-206ENST00000439518 CC2D2AQ9P2K1 1620 aa40.44■■■■■ 4.06
NCKIPSD-206ENST00000439518 CECR2Q9BXF3 1484 aa40.29■■■■■ 4.04
NCKIPSD-206ENST00000439518 NCAPD3P42695 1498 aa39.34■■■■□ 3.89
NCKIPSD-206ENST00000439518 SMARCA4P51532 1647 aa39.26■■■■□ 3.88
NCKIPSD-206ENST00000439518 ATAD2BQ9ULI0 1458 aa39.24■■■■□ 3.87
NCKIPSD-206ENST00000439518 SMARCA2P51531 1590 aa39.14■■■■□ 3.86
NCKIPSD-206ENST00000439518 BAZ1AQ9NRL2 1556 aaPredicted RBP39.13■■■■□ 3.85
NCKIPSD-206ENST00000439518 HMGXB3Q12766 1538 aa39.04■■■■□ 3.84
NCKIPSD-206ENST00000439518 PEG3Q9GZU2 1588 aa38.92■■■■□ 3.82
NCKIPSD-206ENST00000439518 MROH2BQ7Z745 1585 aa38.89■■■■□ 3.82
NCKIPSD-206ENST00000439518 BAZ1BQ9UIG0 1483 aaKnown RBP38.86■■■■□ 3.81
NCKIPSD-206ENST00000439518 ERCC6Q03468 1493 aa38.6■■■■□ 3.77
NCKIPSD-206ENST00000439518 NESP48681 1621 aa38.56■■■■□ 3.76
NCKIPSD-206ENST00000439518 CUX2O14529 1486 aa38.45■■■■□ 3.75
NCKIPSD-206ENST00000439518 WIZO95785 1651 aa38.39■■■■□ 3.74
NCKIPSD-206ENST00000439518 LAMC3Q9Y6N6 1575 aa38.35■■■■□ 3.73
NCKIPSD-206ENST00000439518 RSF1Q96T23 1441 aaPredicted RBP38.23■■■■□ 3.71
NCKIPSD-206ENST00000439518 CADPSQ9ULU8 1353 aa38.14■■■■□ 3.7
NCKIPSD-206ENST00000439518 PDS5BQ9NTI5 1447 aa38.12■■■■□ 3.69
NCKIPSD-206ENST00000439518 THOC2Q8NI27 1593 aaKnown RBP38.09■■■■□ 3.69
NCKIPSD-206ENST00000439518 DNAJC5Q9H3Z4 198 aa38.06■■■■□ 3.68
NCKIPSD-206ENST00000439518 KIF21AQ7Z4S6 1674 aa38.03■■■■□ 3.68
NCKIPSD-206ENST00000439518 TOP2AP11388 1531 aaKnown RBP37.97■■■■□ 3.67
NCKIPSD-206ENST00000439518 CFTRP13569 1480 aa37.79■■■■□ 3.64
NCKIPSD-206ENST00000439518 MRC2Q9UBG0 1479 aa37.77■■■■□ 3.64
NCKIPSD-206ENST00000439518 FANCD2Q9BXW9 1451 aa37.69■■■■□ 3.62
NCKIPSD-206ENST00000439518 CEP164Q9UPV0 1460 aa37.68■■■■□ 3.62
NCKIPSD-206ENST00000439518 WDR62O43379 1518 aa37.66■■■■□ 3.62
NCKIPSD-206ENST00000439518 CCDC88BA6NC98 1476 aa37.55■■■■□ 3.6
NCKIPSD-206ENST00000439518 URB2Q14146 1524 aaKnown RBP37.36■■■■□ 3.57
NCKIPSD-206ENST00000439518 PRDM2Q13029 1718 aa37.34■■■■□ 3.57
NCKIPSD-206ENST00000439518 TOPBP1Q92547 1522 aa37.01■■■■□ 3.52
NCKIPSD-206ENST00000439518 ABCC8Q09428 1581 aa36.96■■■■□ 3.51
NCKIPSD-206ENST00000439518 IFT140Q96RY7 1462 aa36.94■■■■□ 3.5
NCKIPSD-206ENST00000439518 DNMBPQ6XZF7 1577 aa36.9■■■■□ 3.5
NCKIPSD-206ENST00000439518 ZNF608Q9ULD9 1512 aaPredicted RBP36.84■■■■□ 3.49
NCKIPSD-206ENST00000439518 OSCARQ8IYS5 282 aa36.76■■■■□ 3.48
NCKIPSD-206ENST00000439518 SUPT5HO00267 1087 aaKnown RBP36.75■■■■□ 3.47
NCKIPSD-206ENST00000439518 TARBP1Q13395 1621 aaKnown RBP36.67■■■■□ 3.46
NCKIPSD-206ENST00000439518 POLA1P09884 1462 aaPredicted RBP36.66■■■■□ 3.46
NCKIPSD-206ENST00000439518 EIF4G3O43432 1585 aaKnown RBP36.62■■■■□ 3.45
NCKIPSD-206ENST00000439518 AQRO60306 1485 aaKnown RBP eCLIP36.55■■■■□ 3.446e-7■■■■■ 27.6
NCKIPSD-206ENST00000439518 RAD54L2Q9Y4B4 1467 aa36.51■■■■□ 3.44
NCKIPSD-206ENST00000439518 CUX1P39880 1505 aa36.51■■■■□ 3.44
NCKIPSD-206ENST00000439518 SOGA1O94964 1423 aa36.51■■■■□ 3.43
NCKIPSD-206ENST00000439518 FGD5Q6ZNL6 1462 aa36.47■■■■□ 3.43
NCKIPSD-206ENST00000439518 TRIM41Q8WV44 630 aa36.46■■■■□ 3.43
NCKIPSD-206ENST00000439518 TDRD9Q8NDG6 1382 aaKnown RBP36.4■■■■□ 3.42
NCKIPSD-206ENST00000439518 WDR97A6NE52 1622 aa36.3■■■■□ 3.4
NCKIPSD-206ENST00000439518 CHD1O14646 1710 aa36.25■■■■□ 3.39
NCKIPSD-206ENST00000439518 RIMBP3CA6NJZ7 1639 aa36.2■■■■□ 3.39
NCKIPSD-206ENST00000439518 RIMBP3BA6NNM3 1639 aa36.2■■■■□ 3.39
NCKIPSD-206ENST00000439518 RIMBP3Q9UFD9 1639 aa36.2■■■■□ 3.39
NCKIPSD-206ENST00000439518 FBLN2P98095 1184 aa36.2■■■■□ 3.39
NCKIPSD-206ENST00000439518 SNAPC4Q5SXM2 1469 aa36.17■■■■□ 3.38
NCKIPSD-206ENST00000439518 ARHGEF11O15085 1522 aa36.15■■■■□ 3.38
NCKIPSD-206ENST00000439518 GRIN2BQ13224 1484 aa36.15■■■■□ 3.38
NCKIPSD-206ENST00000439518 MAGI1Q96QZ7 1491 aaPredicted RBP36.11■■■■□ 3.37
NCKIPSD-206ENST00000439518 ABCA10Q8WWZ4 1543 aa36.1■■■■□ 3.37
NCKIPSD-206ENST00000439518 GAPVD1Q14C86 1478 aa36.06■■■■□ 3.36
NCKIPSD-206ENST00000439518 WRNQ14191 1432 aaPredicted RBP eCLIP36.03■■■■□ 3.36
NCKIPSD-206ENST00000439518 CHMP7Q8WUX9 453 aaPredicted RBP36.02■■■■□ 3.36
NCKIPSD-206ENST00000439518 TOP2BQ02880 1626 aa36.01■■■■□ 3.36
NCKIPSD-206ENST00000439518 BIVM-ERCC5R4GMW8 1640 aa36■■■■□ 3.35
NCKIPSD-206ENST00000439518 ABCA5Q8WWZ7 1642 aa35.99■■■■□ 3.35
NCKIPSD-206ENST00000439518 SYNJ2O15056 1496 aa35.99■■■■□ 3.35
NCKIPSD-206ENST00000439518 SYNJ1O43426 1573 aa35.97■■■■□ 3.35
NCKIPSD-206ENST00000439518 PBRM1Q86U86 1689 aa35.97■■■■□ 3.35
NCKIPSD-206ENST00000439518 CLASP1Q7Z460 1538 aa35.91■■■■□ 3.34
NCKIPSD-206ENST00000439518 CYB5RLQ6IPT4 315 aa35.87■■■■□ 3.33
NCKIPSD-206ENST00000439518 ARAP1Q96P48 1450 aa35.83■■■■□ 3.33
NCKIPSD-206ENST00000439518 ADAMTS12P58397 1594 aa35.68■■■■□ 3.3
NCKIPSD-206ENST00000439518 GRIN2AQ12879 1464 aa35.68■■■■□ 3.3
NCKIPSD-206ENST00000439518 ERICH3Q5RHP9 1530 aa35.64■■■■□ 3.3
NCKIPSD-206ENST00000439518 FHAD1B1AJZ9 1412 aa35.64■■■■□ 3.3
NCKIPSD-206ENST00000439518 NUP160Q12769 1436 aa35.57■■■■□ 3.28
NCKIPSD-206ENST00000439518 CEP170Q5SW79 1584 aa35.52■■■■□ 3.28
NCKIPSD-206ENST00000439518 ERCC6L2Q5T890 1561 aa35.37■■■■□ 3.25
NCKIPSD-206ENST00000439518 SHROOM2Q13796 1616 aa35.35■■■■□ 3.25
NCKIPSD-206ENST00000439518 KIF27Q86VH2 1401 aa35.33■■■■□ 3.25
NCKIPSD-206ENST00000439518 TRHP20396 242 aaPredicted RBP35.32■■■■□ 3.24
NCKIPSD-206ENST00000439518 IGF1RP08069 1367 aa35.31■■■■□ 3.24
NCKIPSD-206ENST00000439518 JPH4Q96JJ6 628 aa35.2■■■■□ 3.23
NCKIPSD-206ENST00000439518 RUSC2Q8N2Y8 1516 aa35.17■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms