RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 NISCHQ9Y2I1 1504 aa25.33■■□□□ 1.65
MCF2L-216ENST00000439475 CCDC180Q9P1Z9 1646 aa22.55■■□□□ 1.2
MCF2L-216ENST00000439475 ABCC9O60706 1549 aa22.19■■□□□ 1.14
MCF2L-216ENST00000439475 DCAF8L2P0C7V8 631 aa21.37■■□□□ 1.01
MCF2L-216ENST00000439475 RB1CC1Q8TDY2 1594 aa21.32■■□□□ 1
MCF2L-216ENST00000439475 NACADO15069 1562 aa21.27■■□□□ 1
MCF2L-216ENST00000439475 MYO15BQ96JP2 1530 aa21.09■□□□□ 0.97
MCF2L-216ENST00000439475 ZCCHC6Q5VYS8 1495 aaKnown RBP21.05■□□□□ 0.96
MCF2L-216ENST00000439475 DCAF1Q9Y4B6 1507 aa20.96■□□□□ 0.95
MCF2L-216ENST00000439475 PABPN1Q86U42 306 aaKnown RBP eCLIP20.76■□□□□ 0.913e-6■■■■□ 22.6
MCF2L-216ENST00000439475 UNC13AQ9UPW8 1703 aa20.75■□□□□ 0.91
MCF2L-216ENST00000439475 BICRAQ9NZM4 1560 aa20.58■□□□□ 0.88
MCF2L-216ENST00000439475 SCRIBQ14160 1630 aa20.55■□□□□ 0.88
MCF2L-216ENST00000439475 DNAJC5BQ9UF47 199 aa20.44■□□□□ 0.86
MCF2L-216ENST00000439475 SHROOM4Q9ULL8 1493 aa20.43■□□□□ 0.86
MCF2L-216ENST00000439475 EIF4G1Q04637 1599 aaKnown RBP20.1■□□□□ 0.81
MCF2L-216ENST00000439475 CC2D2AQ9P2K1 1620 aa20.05■□□□□ 0.8
MCF2L-216ENST00000439475 CECR2Q9BXF3 1484 aa19.96■□□□□ 0.79
MCF2L-216ENST00000439475 BAZ1AQ9NRL2 1556 aaPredicted RBP19.66■□□□□ 0.74
MCF2L-216ENST00000439475 SMARCA4P51532 1647 aa19.65■□□□□ 0.74
MCF2L-216ENST00000439475 NCAPD3P42695 1498 aa19.63■□□□□ 0.73
MCF2L-216ENST00000439475 ATAD2BQ9ULI0 1458 aa19.6■□□□□ 0.73
MCF2L-216ENST00000439475 SMARCA2P51531 1590 aa19.6■□□□□ 0.73
MCF2L-216ENST00000439475 MROH2BQ7Z745 1585 aa19.49■□□□□ 0.71
MCF2L-216ENST00000439475 HMGXB3Q12766 1538 aa19.48■□□□□ 0.71
MCF2L-216ENST00000439475 PEG3Q9GZU2 1588 aa19.46■□□□□ 0.71
MCF2L-216ENST00000439475 BAZ1BQ9UIG0 1483 aaKnown RBP19.46■□□□□ 0.71
MCF2L-216ENST00000439475 WIZO95785 1651 aa19.28■□□□□ 0.68
MCF2L-216ENST00000439475 RSF1Q96T23 1441 aaPredicted RBP19.26■□□□□ 0.67
MCF2L-216ENST00000439475 ERCC6Q03468 1493 aa19.19■□□□□ 0.66
MCF2L-216ENST00000439475 LAMC3Q9Y6N6 1575 aa19.13■□□□□ 0.65
MCF2L-216ENST00000439475 NESP48681 1621 aa19.13■□□□□ 0.65
MCF2L-216ENST00000439475 TOP2AP11388 1531 aaKnown RBP19.08■□□□□ 0.64
MCF2L-216ENST00000439475 CADPSQ9ULU8 1353 aa19.07■□□□□ 0.64
MCF2L-216ENST00000439475 PDS5BQ9NTI5 1447 aa19.06■□□□□ 0.64
MCF2L-216ENST00000439475 CUX2O14529 1486 aa18.99■□□□□ 0.63
MCF2L-216ENST00000439475 CFTRP13569 1480 aa18.9■□□□□ 0.62
MCF2L-216ENST00000439475 KIF21AQ7Z4S6 1674 aa18.89■□□□□ 0.61
MCF2L-216ENST00000439475 CCDC88BA6NC98 1476 aa18.88■□□□□ 0.61
MCF2L-216ENST00000439475 THOC2Q8NI27 1593 aaKnown RBP18.83■□□□□ 0.6
MCF2L-216ENST00000439475 FANCD2Q9BXW9 1451 aa18.83■□□□□ 0.6
MCF2L-216ENST00000439475 CEP164Q9UPV0 1460 aa18.83■□□□□ 0.6
MCF2L-216ENST00000439475 MRC2Q9UBG0 1479 aa18.8■□□□□ 0.6
MCF2L-216ENST00000439475 SUPT5HO00267 1087 aaKnown RBP18.8■□□□□ 0.6
MCF2L-216ENST00000439475 PRDM2Q13029 1718 aa18.72■□□□□ 0.59
MCF2L-216ENST00000439475 WDR62O43379 1518 aa18.7■□□□□ 0.58
MCF2L-216ENST00000439475 URB2Q14146 1524 aaKnown RBP18.59■□□□□ 0.57
MCF2L-216ENST00000439475 ABCC8Q09428 1581 aa18.59■□□□□ 0.57
MCF2L-216ENST00000439475 DNAJC5Q9H3Z4 198 aa18.57■□□□□ 0.56
MCF2L-216ENST00000439475 TOPBP1Q92547 1522 aa18.49■□□□□ 0.55
MCF2L-216ENST00000439475 DNMBPQ6XZF7 1577 aa18.47■□□□□ 0.55
MCF2L-216ENST00000439475 IFT140Q96RY7 1462 aa18.44■□□□□ 0.54
MCF2L-216ENST00000439475 POLA1P09884 1462 aaPredicted RBP18.33■□□□□ 0.52
MCF2L-216ENST00000439475 SOGA1O94964 1423 aa18.32■□□□□ 0.52
MCF2L-216ENST00000439475 ZNF608Q9ULD9 1512 aaPredicted RBP18.3■□□□□ 0.52
MCF2L-216ENST00000439475 CUX1P39880 1505 aa18.28■□□□□ 0.52
MCF2L-216ENST00000439475 OSCARQ8IYS5 282 aa18.28■□□□□ 0.52
MCF2L-216ENST00000439475 FGD5Q6ZNL6 1462 aa18.27■□□□□ 0.52
MCF2L-216ENST00000439475 TARBP1Q13395 1621 aaKnown RBP18.26■□□□□ 0.51
MCF2L-216ENST00000439475 RAD54L2Q9Y4B4 1467 aa18.26■□□□□ 0.51
MCF2L-216ENST00000439475 AQRO60306 1485 aaKnown RBP eCLIP18.23■□□□□ 0.51
MCF2L-216ENST00000439475 EIF4G3O43432 1585 aaKnown RBP18.21■□□□□ 0.51
MCF2L-216ENST00000439475 WRNQ14191 1432 aaPredicted RBP eCLIP18.21■□□□□ 0.51
MCF2L-216ENST00000439475 TDRD9Q8NDG6 1382 aaKnown RBP18.2■□□□□ 0.5
MCF2L-216ENST00000439475 WDR97A6NE52 1622 aa18.18■□□□□ 0.5
MCF2L-216ENST00000439475 FBLN2P98095 1184 aa18.14■□□□□ 0.49
MCF2L-216ENST00000439475 TOP2BQ02880 1626 aa18.12■□□□□ 0.49
MCF2L-216ENST00000439475 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
MCF2L-216ENST00000439475 ABCA10Q8WWZ4 1543 aa18.1■□□□□ 0.49
MCF2L-216ENST00000439475 GRIN2BQ13224 1484 aa18.09■□□□□ 0.49
MCF2L-216ENST00000439475 CHMP7Q8WUX9 453 aaPredicted RBP18.08■□□□□ 0.48
MCF2L-216ENST00000439475 SYNJ1O43426 1573 aa18.08■□□□□ 0.48
MCF2L-216ENST00000439475 GAPVD1Q14C86 1478 aa18.07■□□□□ 0.48
MCF2L-216ENST00000439475 MAGI1Q96QZ7 1491 aaPredicted RBP18.05■□□□□ 0.48
MCF2L-216ENST00000439475 SNAPC4Q5SXM2 1469 aa18.04■□□□□ 0.48
MCF2L-216ENST00000439475 CHD1O14646 1710 aa18.01■□□□□ 0.47
MCF2L-216ENST00000439475 PBRM1Q86U86 1689 aa17.99■□□□□ 0.47
MCF2L-216ENST00000439475 ABCA5Q8WWZ7 1642 aa17.98■□□□□ 0.47
MCF2L-216ENST00000439475 SYNJ2O15056 1496 aa17.97■□□□□ 0.47
MCF2L-216ENST00000439475 TRIM41Q8WV44 630 aa17.94■□□□□ 0.46
MCF2L-216ENST00000439475 ERICH3Q5RHP9 1530 aa17.89■□□□□ 0.45
MCF2L-216ENST00000439475 FHAD1B1AJZ9 1412 aa17.88■□□□□ 0.45
MCF2L-216ENST00000439475 KIF27Q86VH2 1401 aa17.87■□□□□ 0.45
MCF2L-216ENST00000439475 ARHGEF11O15085 1522 aa17.86■□□□□ 0.45
MCF2L-216ENST00000439475 RIMBP3CA6NJZ7 1639 aa17.86■□□□□ 0.45
MCF2L-216ENST00000439475 RIMBP3BA6NNM3 1639 aa17.86■□□□□ 0.45
MCF2L-216ENST00000439475 RIMBP3Q9UFD9 1639 aa17.86■□□□□ 0.45
MCF2L-216ENST00000439475 GRIN2AQ12879 1464 aa17.83■□□□□ 0.45
MCF2L-216ENST00000439475 ADAMTS12P58397 1594 aa17.83■□□□□ 0.44
MCF2L-216ENST00000439475 CYB5RLQ6IPT4 315 aa17.81■□□□□ 0.44
MCF2L-216ENST00000439475 CLASP1Q7Z460 1538 aa17.81■□□□□ 0.44
MCF2L-216ENST00000439475 IGF1RP08069 1367 aa17.78■□□□□ 0.44
MCF2L-216ENST00000439475 NUP160Q12769 1436 aa17.75■□□□□ 0.43
MCF2L-216ENST00000439475 CUL7Q14999 1698 aa17.71■□□□□ 0.42
MCF2L-216ENST00000439475 CEP170Q5SW79 1584 aa17.7■□□□□ 0.42
MCF2L-216ENST00000439475 CARMIL1Q5VZK9 1371 aa17.7■□□□□ 0.42
MCF2L-216ENST00000439475 ARAP1Q96P48 1450 aa17.69■□□□□ 0.42
MCF2L-216ENST00000439475 JPH4Q96JJ6 628 aa17.67■□□□□ 0.42
MCF2L-216ENST00000439475 SHROOM2Q13796 1616 aa17.59■□□□□ 0.41
MCF2L-216ENST00000439475 KIAA0586Q9BVV6 1533 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms