RNA–Protein interactions for RNA: ENST00000439286.5

GARNL3-206, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 5

Gene GARNL3, Length 905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-206ENST00000439286 NISCHQ9Y2I1 1504 aa33.43■■■□□ 2.94
GARNL3-206ENST00000439286 ABCC9O60706 1549 aa29.97■■■□□ 2.39
GARNL3-206ENST00000439286 CCDC180Q9P1Z9 1646 aa29.84■■■□□ 2.37
GARNL3-206ENST00000439286 RB1CC1Q8TDY2 1594 aa28.51■■■□□ 2.15
GARNL3-206ENST00000439286 DCAF8L2P0C7V8 631 aa28.49■■■□□ 2.15
GARNL3-206ENST00000439286 NACADO15069 1562 aa28.33■■■□□ 2.12
GARNL3-206ENST00000439286 DNAJC5BQ9UF47 199 aa28.07■■■□□ 2.08
GARNL3-206ENST00000439286 PABPN1Q86U42 306 aaKnown RBP eCLIP28.02■■■□□ 2.08
GARNL3-206ENST00000439286 MYO15BQ96JP2 1530 aa27.95■■■□□ 2.06
GARNL3-206ENST00000439286 ZCCHC6Q5VYS8 1495 aaKnown RBP27.69■■■□□ 2.02
GARNL3-206ENST00000439286 DCAF1Q9Y4B6 1507 aa27.6■■■□□ 2.01
GARNL3-206ENST00000439286 UNC13AQ9UPW8 1703 aa27.56■■■□□ 2
GARNL3-206ENST00000439286 BICRAQ9NZM4 1560 aa27.56■■■□□ 2
GARNL3-206ENST00000439286 SHROOM4Q9ULL8 1493 aa27.32■■□□□ 1.96
GARNL3-206ENST00000439286 SCRIBQ14160 1630 aa27.28■■□□□ 1.96
GARNL3-206ENST00000439286 CECR2Q9BXF3 1484 aa27.01■■□□□ 1.91
GARNL3-206ENST00000439286 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
GARNL3-206ENST00000439286 EIF4G1Q04637 1599 aaKnown RBP26.96■■□□□ 1.91
GARNL3-206ENST00000439286 NCAPD3P42695 1498 aa26.2■■□□□ 1.78
GARNL3-206ENST00000439286 ATAD2BQ9ULI0 1458 aa26.11■■□□□ 1.77
GARNL3-206ENST00000439286 SMARCA2P51531 1590 aa26.03■■□□□ 1.76
GARNL3-206ENST00000439286 SMARCA4P51532 1647 aa26■■□□□ 1.75
GARNL3-206ENST00000439286 BAZ1AQ9NRL2 1556 aaPredicted RBP25.96■■□□□ 1.75
GARNL3-206ENST00000439286 ERCC6Q03468 1493 aa25.95■■□□□ 1.74
GARNL3-206ENST00000439286 HMGXB3Q12766 1538 aa25.93■■□□□ 1.74
GARNL3-206ENST00000439286 BAZ1BQ9UIG0 1483 aaKnown RBP25.89■■□□□ 1.73
GARNL3-206ENST00000439286 DNAJC5Q9H3Z4 198 aa25.82■■□□□ 1.72
GARNL3-206ENST00000439286 CUX2O14529 1486 aa25.81■■□□□ 1.72
GARNL3-206ENST00000439286 MROH2BQ7Z745 1585 aa25.74■■□□□ 1.71
GARNL3-206ENST00000439286 PEG3Q9GZU2 1588 aa25.73■■□□□ 1.71
GARNL3-206ENST00000439286 NESP48681 1621 aa25.7■■□□□ 1.71
GARNL3-206ENST00000439286 PDS5BQ9NTI5 1447 aa25.54■■□□□ 1.68
GARNL3-206ENST00000439286 LAMC3Q9Y6N6 1575 aa25.53■■□□□ 1.68
GARNL3-206ENST00000439286 CADPSQ9ULU8 1353 aa25.46■■□□□ 1.67
GARNL3-206ENST00000439286 WIZO95785 1651 aa25.37■■□□□ 1.65
GARNL3-206ENST00000439286 THOC2Q8NI27 1593 aaKnown RBP25.33■■□□□ 1.65
GARNL3-206ENST00000439286 RSF1Q96T23 1441 aaPredicted RBP25.29■■□□□ 1.64
GARNL3-206ENST00000439286 KIF21AQ7Z4S6 1674 aa25.23■■□□□ 1.63
GARNL3-206ENST00000439286 MRC2Q9UBG0 1479 aa25.22■■□□□ 1.63
GARNL3-206ENST00000439286 CEP164Q9UPV0 1460 aa25.15■■□□□ 1.62
GARNL3-206ENST00000439286 FANCD2Q9BXW9 1451 aa25.12■■□□□ 1.61
GARNL3-206ENST00000439286 TOP2AP11388 1531 aaKnown RBP25.12■■□□□ 1.61
GARNL3-206ENST00000439286 CFTRP13569 1480 aa25.11■■□□□ 1.61
GARNL3-206ENST00000439286 WDR62O43379 1518 aa25.08■■□□□ 1.61
GARNL3-206ENST00000439286 CCDC88BA6NC98 1476 aa24.89■■□□□ 1.58
GARNL3-206ENST00000439286 URB2Q14146 1524 aaKnown RBP24.84■■□□□ 1.57
GARNL3-206ENST00000439286 OSCARQ8IYS5 282 aa24.8■■□□□ 1.56
GARNL3-206ENST00000439286 TRIM41Q8WV44 630 aa24.78■■□□□ 1.56
GARNL3-206ENST00000439286 IFT140Q96RY7 1462 aa24.66■■□□□ 1.54
GARNL3-206ENST00000439286 ABCC8Q09428 1581 aa24.64■■□□□ 1.54
GARNL3-206ENST00000439286 TOPBP1Q92547 1522 aa24.61■■□□□ 1.53
GARNL3-206ENST00000439286 PRDM2Q13029 1718 aa24.58■■□□□ 1.53
GARNL3-206ENST00000439286 ZNF608Q9ULD9 1512 aaPredicted RBP24.55■■□□□ 1.52
GARNL3-206ENST00000439286 DNMBPQ6XZF7 1577 aa24.5■■□□□ 1.51
GARNL3-206ENST00000439286 AQRO60306 1485 aaKnown RBP eCLIP24.4■■□□□ 1.5
GARNL3-206ENST00000439286 SUPT5HO00267 1087 aaKnown RBP24.4■■□□□ 1.5
GARNL3-206ENST00000439286 FBLN2P98095 1184 aa24.39■■□□□ 1.49
GARNL3-206ENST00000439286 POLA1P09884 1462 aaPredicted RBP24.37■■□□□ 1.49
GARNL3-206ENST00000439286 SOGA1O94964 1423 aa24.36■■□□□ 1.49
GARNL3-206ENST00000439286 EIF4G3O43432 1585 aaKnown RBP24.33■■□□□ 1.49
GARNL3-206ENST00000439286 RAD54L2Q9Y4B4 1467 aa24.3■■□□□ 1.48
GARNL3-206ENST00000439286 TDRD9Q8NDG6 1382 aaKnown RBP24.29■■□□□ 1.48
GARNL3-206ENST00000439286 TARBP1Q13395 1621 aaKnown RBP24.29■■□□□ 1.48
GARNL3-206ENST00000439286 FGD5Q6ZNL6 1462 aa24.24■■□□□ 1.47
GARNL3-206ENST00000439286 CYB5RLQ6IPT4 315 aa24.21■■□□□ 1.47
GARNL3-206ENST00000439286 CHMP7Q8WUX9 453 aaPredicted RBP24.21■■□□□ 1.47
GARNL3-206ENST00000439286 RIMBP3CA6NJZ7 1639 aa24.21■■□□□ 1.47
GARNL3-206ENST00000439286 RIMBP3BA6NNM3 1639 aa24.21■■□□□ 1.47
GARNL3-206ENST00000439286 RIMBP3Q9UFD9 1639 aa24.21■■□□□ 1.47
GARNL3-206ENST00000439286 ARHGEF11O15085 1522 aa24.2■■□□□ 1.47
GARNL3-206ENST00000439286 CUX1P39880 1505 aa24.17■■□□□ 1.46
GARNL3-206ENST00000439286 SNAPC4Q5SXM2 1469 aa24.13■■□□□ 1.45
GARNL3-206ENST00000439286 GRIN2BQ13224 1484 aa24.11■■□□□ 1.45
GARNL3-206ENST00000439286 WDR97A6NE52 1622 aa24.1■■□□□ 1.45
GARNL3-206ENST00000439286 MAGI1Q96QZ7 1491 aaPredicted RBP24.07■■□□□ 1.44
GARNL3-206ENST00000439286 CHD1O14646 1710 aa24.06■■□□□ 1.44
GARNL3-206ENST00000439286 GAPVD1Q14C86 1478 aa24.02■■□□□ 1.44
GARNL3-206ENST00000439286 SYNJ2O15056 1496 aa24■■□□□ 1.43
GARNL3-206ENST00000439286 TRHP20396 242 aaPredicted RBP23.98■■□□□ 1.43
GARNL3-206ENST00000439286 WRNQ14191 1432 aaPredicted RBP eCLIP23.98■■□□□ 1.43
GARNL3-206ENST00000439286 SYNJ1O43426 1573 aa23.96■■□□□ 1.43
GARNL3-206ENST00000439286 ABCA10Q8WWZ4 1543 aa23.96■■□□□ 1.43
GARNL3-206ENST00000439286 ARAP1Q96P48 1450 aa23.96■■□□□ 1.43
GARNL3-206ENST00000439286 CLASP1Q7Z460 1538 aa23.89■■□□□ 1.41
GARNL3-206ENST00000439286 ABCA5Q8WWZ7 1642 aa23.81■■□□□ 1.4
GARNL3-206ENST00000439286 PBRM1Q86U86 1689 aa23.79■■□□□ 1.4
GARNL3-206ENST00000439286 TOP2BQ02880 1626 aa23.78■■□□□ 1.4
GARNL3-206ENST00000439286 FHAD1B1AJZ9 1412 aa23.75■■□□□ 1.39
GARNL3-206ENST00000439286 GRIN2AQ12879 1464 aa23.75■■□□□ 1.39
GARNL3-206ENST00000439286 BIVM-ERCC5R4GMW8 1640 aa23.72■■□□□ 1.39
GARNL3-206ENST00000439286 NUP160Q12769 1436 aa23.67■■□□□ 1.38
GARNL3-206ENST00000439286 ADAMTS12P58397 1594 aa23.66■■□□□ 1.38
GARNL3-206ENST00000439286 ERICH3Q5RHP9 1530 aa23.65■■□□□ 1.38
GARNL3-206ENST00000439286 CEP170Q5SW79 1584 aa23.58■■□□□ 1.37
GARNL3-206ENST00000439286 JPH4Q96JJ6 628 aa23.57■■□□□ 1.36
GARNL3-206ENST00000439286 ERCC6L2Q5T890 1561 aa23.51■■□□□ 1.35
GARNL3-206ENST00000439286 PRG4Q92954 1404 aaPredicted RBP23.5■■□□□ 1.35
GARNL3-206ENST00000439286 KIF27Q86VH2 1401 aa23.5■■□□□ 1.35
GARNL3-206ENST00000439286 IGF1RP08069 1367 aa23.45■■□□□ 1.34
GARNL3-206ENST00000439286 NPM1P06748 294 aaKnown RBP eCLIP23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms