RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 NISCHQ9Y2I1 1504 aa60.39■■■■■ 7.26
RAPGEF1-206ENST00000438647 CCDC180Q9P1Z9 1646 aa53.81■■■■■ 6.2
RAPGEF1-206ENST00000438647 ABCC9O60706 1549 aa52.86■■■■■ 6.05
RAPGEF1-206ENST00000438647 RB1CC1Q8TDY2 1594 aa50.79■■■■■ 5.72
RAPGEF1-206ENST00000438647 NACADO15069 1562 aa50.68■■■■■ 5.7
RAPGEF1-206ENST00000438647 DCAF8L2P0C7V8 631 aa50.58■■■■■ 5.69
RAPGEF1-206ENST00000438647 MYO15BQ96JP2 1530 aa50.31■■■■■ 5.65
RAPGEF1-206ENST00000438647 ZCCHC6Q5VYS8 1495 aaKnown RBP50.26■■■■■ 5.64
RAPGEF1-206ENST00000438647 DCAF1Q9Y4B6 1507 aa50■■■■■ 5.59
RAPGEF1-206ENST00000438647 UNC13AQ9UPW8 1703 aa49.52■■■■■ 5.52
RAPGEF1-206ENST00000438647 PABPN1Q86U42 306 aaKnown RBP eCLIP49.36■■■■■ 5.49
RAPGEF1-206ENST00000438647 BICRAQ9NZM4 1560 aa49.19■■■■■ 5.46
RAPGEF1-206ENST00000438647 SCRIBQ14160 1630 aa49.04■■■■■ 5.44
RAPGEF1-206ENST00000438647 SHROOM4Q9ULL8 1493 aa48.78■■■■■ 5.4
RAPGEF1-206ENST00000438647 DNAJC5BQ9UF47 199 aa48.69■■■■■ 5.38
RAPGEF1-206ENST00000438647 EIF4G1Q04637 1599 aaKnown RBP47.96■■■■■ 5.27
RAPGEF1-206ENST00000438647 CC2D2AQ9P2K1 1620 aa47.81■■■■■ 5.24
RAPGEF1-206ENST00000438647 CECR2Q9BXF3 1484 aa47.56■■■■■ 5.2
RAPGEF1-206ENST00000438647 SMARCA4P51532 1647 aa46.9■■■■■ 5.1
RAPGEF1-206ENST00000438647 BAZ1AQ9NRL2 1556 aaPredicted RBP46.86■■■■■ 5.09
RAPGEF1-206ENST00000438647 NCAPD3P42695 1498 aa46.76■■■■■ 5.08
RAPGEF1-206ENST00000438647 ATAD2BQ9ULI0 1458 aa46.73■■■■■ 5.07
RAPGEF1-206ENST00000438647 SMARCA2P51531 1590 aa46.69■■■■■ 5.07
RAPGEF1-206ENST00000438647 HMGXB3Q12766 1538 aa46.51■■■■■ 5.04
RAPGEF1-206ENST00000438647 MROH2BQ7Z745 1585 aa46.5■■■■■ 5.03
RAPGEF1-206ENST00000438647 PEG3Q9GZU2 1588 aa46.47■■■■■ 5.03
RAPGEF1-206ENST00000438647 BAZ1BQ9UIG0 1483 aaKnown RBP46.36■■■■■ 5.01
RAPGEF1-206ENST00000438647 WIZO95785 1651 aa45.97■■■■■ 4.95
RAPGEF1-206ENST00000438647 RSF1Q96T23 1441 aaPredicted RBP45.91■■■■■ 4.94
RAPGEF1-206ENST00000438647 ERCC6Q03468 1493 aa45.66■■■■■ 4.9
RAPGEF1-206ENST00000438647 NESP48681 1621 aa45.64■■■■■ 4.9
RAPGEF1-206ENST00000438647 LAMC3Q9Y6N6 1575 aa45.58■■■■■ 4.89
RAPGEF1-206ENST00000438647 TOP2AP11388 1531 aaKnown RBP45.52■■■■■ 4.88
RAPGEF1-206ENST00000438647 CADPSQ9ULU8 1353 aa45.39■■■■■ 4.86
RAPGEF1-206ENST00000438647 PDS5BQ9NTI5 1447 aa45.31■■■■■ 4.84
RAPGEF1-206ENST00000438647 CUX2O14529 1486 aa45.27■■■■■ 4.84
RAPGEF1-206ENST00000438647 KIF21AQ7Z4S6 1674 aa45.09■■■■■ 4.81
RAPGEF1-206ENST00000438647 CFTRP13569 1480 aa45.06■■■■■ 4.8
RAPGEF1-206ENST00000438647 THOC2Q8NI27 1593 aaKnown RBP45.03■■■■■ 4.8
RAPGEF1-206ENST00000438647 CCDC88BA6NC98 1476 aa44.97■■■■■ 4.79
RAPGEF1-206ENST00000438647 FANCD2Q9BXW9 1451 aa44.85■■■■■ 4.77
RAPGEF1-206ENST00000438647 CEP164Q9UPV0 1460 aa44.85■■■■■ 4.77
RAPGEF1-206ENST00000438647 MRC2Q9UBG0 1479 aa44.82■■■■■ 4.77
RAPGEF1-206ENST00000438647 WDR62O43379 1518 aa44.67■■■■■ 4.74
RAPGEF1-206ENST00000438647 PRDM2Q13029 1718 aa44.65■■■■■ 4.74
RAPGEF1-206ENST00000438647 SUPT5HO00267 1087 aaKnown RBP44.56■■■■■ 4.72
RAPGEF1-206ENST00000438647 URB2Q14146 1524 aaKnown RBP44.39■■■■■ 4.7
RAPGEF1-206ENST00000438647 ABCC8Q09428 1581 aa44.15■■■■■ 4.66
RAPGEF1-206ENST00000438647 DNAJC5Q9H3Z4 198 aa44.14■■■■■ 4.66
RAPGEF1-206ENST00000438647 TOPBP1Q92547 1522 aa44.09■■■■■ 4.65
RAPGEF1-206ENST00000438647 DNMBPQ6XZF7 1577 aa44.04■■■■■ 4.64
RAPGEF1-206ENST00000438647 IFT140Q96RY7 1462 aa43.92■■■■■ 4.62
RAPGEF1-206ENST00000438647 POLA1P09884 1462 aaPredicted RBP43.71■■■■■ 4.59
RAPGEF1-206ENST00000438647 ZNF608Q9ULD9 1512 aaPredicted RBP43.67■■■■■ 4.58
RAPGEF1-206ENST00000438647 CUX1P39880 1505 aa43.65■■■■■ 4.58
RAPGEF1-206ENST00000438647 TARBP1Q13395 1621 aaKnown RBP43.61■■■■■ 4.57
RAPGEF1-206ENST00000438647 FGD5Q6ZNL6 1462 aa43.57■■■■■ 4.56
RAPGEF1-206ENST00000438647 SOGA1O94964 1423 aa43.55■■■■■ 4.56
RAPGEF1-206ENST00000438647 EIF4G3O43432 1585 aaKnown RBP43.51■■■■■ 4.56
RAPGEF1-206ENST00000438647 RAD54L2Q9Y4B4 1467 aa43.49■■■■■ 4.55
RAPGEF1-206ENST00000438647 AQRO60306 1485 aaKnown RBP eCLIP43.41■■■■■ 4.545e-6■■■■□ 24.7
RAPGEF1-206ENST00000438647 OSCARQ8IYS5 282 aa43.35■■■■■ 4.53
RAPGEF1-206ENST00000438647 WDR97A6NE52 1622 aa43.33■■■■■ 4.53
RAPGEF1-206ENST00000438647 WRNQ14191 1432 aaPredicted RBP eCLIP43.33■■■■■ 4.533e-6■■■■■ 61.3
RAPGEF1-206ENST00000438647 TDRD9Q8NDG6 1382 aaKnown RBP43.3■■■■■ 4.52
RAPGEF1-206ENST00000438647 TOP2BQ02880 1626 aa43.23■■■■■ 4.51
RAPGEF1-206ENST00000438647 BIVM-ERCC5R4GMW8 1640 aa43.21■■■■■ 4.51
RAPGEF1-206ENST00000438647 SYNJ1O43426 1573 aa43.16■■■■■ 4.5
RAPGEF1-206ENST00000438647 ABCA10Q8WWZ4 1543 aa43.15■■■■■ 4.5
RAPGEF1-206ENST00000438647 GRIN2BQ13224 1484 aa43.08■■■■■ 4.49
RAPGEF1-206ENST00000438647 GAPVD1Q14C86 1478 aa43.04■■■■■ 4.48
RAPGEF1-206ENST00000438647 SNAPC4Q5SXM2 1469 aa43.03■■■■■ 4.48
RAPGEF1-206ENST00000438647 MAGI1Q96QZ7 1491 aaPredicted RBP43■■■■■ 4.47
RAPGEF1-206ENST00000438647 FBLN2P98095 1184 aa42.99■■■■■ 4.47
RAPGEF1-206ENST00000438647 CHD1O14646 1710 aa42.98■■■■■ 4.47
RAPGEF1-206ENST00000438647 ABCA5Q8WWZ7 1642 aa42.97■■■■■ 4.47
RAPGEF1-206ENST00000438647 PBRM1Q86U86 1689 aa42.91■■■■■ 4.46
RAPGEF1-206ENST00000438647 CHMP7Q8WUX9 453 aaPredicted RBP42.86■■■■■ 4.45
RAPGEF1-206ENST00000438647 SYNJ2O15056 1496 aa42.83■■■■■ 4.45
RAPGEF1-206ENST00000438647 ERICH3Q5RHP9 1530 aa42.64■■■■■ 4.42
RAPGEF1-206ENST00000438647 RIMBP3CA6NJZ7 1639 aa42.6■■■■■ 4.41
RAPGEF1-206ENST00000438647 RIMBP3BA6NNM3 1639 aa42.6■■■■■ 4.41
RAPGEF1-206ENST00000438647 RIMBP3Q9UFD9 1639 aa42.6■■■■■ 4.41
RAPGEF1-206ENST00000438647 ARHGEF11O15085 1522 aa42.6■■■■■ 4.41
RAPGEF1-206ENST00000438647 ADAMTS12P58397 1594 aa42.58■■■■■ 4.41
RAPGEF1-206ENST00000438647 TRIM41Q8WV44 630 aa42.58■■■■■ 4.41
RAPGEF1-206ENST00000438647 FHAD1B1AJZ9 1412 aa42.54■■■■■ 4.4
RAPGEF1-206ENST00000438647 CLASP1Q7Z460 1538 aa42.54■■■■■ 4.4
RAPGEF1-206ENST00000438647 GRIN2AQ12879 1464 aa42.51■■■■■ 4.4
RAPGEF1-206ENST00000438647 KIF27Q86VH2 1401 aa42.47■■■■■ 4.39
RAPGEF1-206ENST00000438647 NUP160Q12769 1436 aa42.33■■■■■ 4.37
RAPGEF1-206ENST00000438647 IGF1RP08069 1367 aa42.27■■■■■ 4.36
RAPGEF1-206ENST00000438647 CEP170Q5SW79 1584 aa42.27■■■■■ 4.36
RAPGEF1-206ENST00000438647 CYB5RLQ6IPT4 315 aa42.24■■■■■ 4.35
RAPGEF1-206ENST00000438647 ARAP1Q96P48 1450 aa42.23■■■■■ 4.35
RAPGEF1-206ENST00000438647 CUL7Q14999 1698 aa42.2■■■■■ 4.35
RAPGEF1-206ENST00000438647 CARMIL1Q5VZK9 1371 aa42.05■■■■■ 4.32
RAPGEF1-206ENST00000438647 SHROOM2Q13796 1616 aa42.01■■■■■ 4.32
RAPGEF1-206ENST00000438647 RUSC2Q8N2Y8 1516 aa41.96■■■■■ 4.31
RAPGEF1-206ENST00000438647 JPH4Q96JJ6 628 aa41.91■■■■■ 4.3
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms