RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 NISCHQ9Y2I1 1504 aa43.68■■■■■ 4.58
HDAC6-208ENST00000438518 CCDC180Q9P1Z9 1646 aa38.71■■■■□ 3.79
HDAC6-208ENST00000438518 ABCC9O60706 1549 aa37.06■■■■□ 3.52
HDAC6-208ENST00000438518 ZCCHC6Q5VYS8 1495 aaKnown RBP36.54■■■■□ 3.44
HDAC6-208ENST00000438518 DCAF1Q9Y4B6 1507 aa36.29■■■■□ 3.4
HDAC6-208ENST00000438518 MYO15BQ96JP2 1530 aa36.24■■■■□ 3.39
HDAC6-208ENST00000438518 NACADO15069 1562 aa36.2■■■■□ 3.39
HDAC6-208ENST00000438518 RB1CC1Q8TDY2 1594 aa36.09■■■■□ 3.37
HDAC6-208ENST00000438518 DCAF8L2P0C7V8 631 aa36.04■■■■□ 3.36
HDAC6-208ENST00000438518 UNC13AQ9UPW8 1703 aa35.26■■■■□ 3.23
HDAC6-208ENST00000438518 SCRIBQ14160 1630 aa35.19■■■■□ 3.22
HDAC6-208ENST00000438518 BICRAQ9NZM4 1560 aa34.88■■■■□ 3.17
HDAC6-208ENST00000438518 SHROOM4Q9ULL8 1493 aa34.77■■■■□ 3.16
HDAC6-208ENST00000438518 PABPN1Q86U42 306 aaKnown RBP eCLIP34.63■■■■□ 3.13
HDAC6-208ENST00000438518 EIF4G1Q04637 1599 aaKnown RBP33.95■■■■□ 3.03
HDAC6-208ENST00000438518 BAZ1AQ9NRL2 1556 aaPredicted RBP33.88■■■■□ 3.01
HDAC6-208ENST00000438518 CECR2Q9BXF3 1484 aa33.84■■■■□ 3.01
HDAC6-208ENST00000438518 SMARCA4P51532 1647 aa33.79■■■■□ 3
HDAC6-208ENST00000438518 CC2D2AQ9P2K1 1620 aa33.64■■■□□ 2.98
HDAC6-208ENST00000438518 MROH2BQ7Z745 1585 aa33.61■■■□□ 2.97
HDAC6-208ENST00000438518 PEG3Q9GZU2 1588 aa33.51■■■□□ 2.96
HDAC6-208ENST00000438518 SMARCA2P51531 1590 aa33.49■■■□□ 2.95
HDAC6-208ENST00000438518 RSF1Q96T23 1441 aaPredicted RBP33.45■■■□□ 2.94
HDAC6-208ENST00000438518 ATAD2BQ9ULI0 1458 aa33.41■■■□□ 2.94
HDAC6-208ENST00000438518 NCAPD3P42695 1498 aa33.34■■■□□ 2.93
HDAC6-208ENST00000438518 DNAJC5BQ9UF47 199 aa33.33■■■□□ 2.93
HDAC6-208ENST00000438518 WIZO95785 1651 aa33.3■■■□□ 2.92
HDAC6-208ENST00000438518 HMGXB3Q12766 1538 aa33.29■■■□□ 2.92
HDAC6-208ENST00000438518 BAZ1BQ9UIG0 1483 aaKnown RBP33.19■■■□□ 2.9
HDAC6-208ENST00000438518 TOP2AP11388 1531 aaKnown RBP33.05■■■□□ 2.88
HDAC6-208ENST00000438518 SUPT5HO00267 1087 aaKnown RBP32.91■■■□□ 2.86
HDAC6-208ENST00000438518 CCDC88BA6NC98 1476 aa32.57■■■□□ 2.8
HDAC6-208ENST00000438518 LAMC3Q9Y6N6 1575 aa32.44■■■□□ 2.78
HDAC6-208ENST00000438518 CADPSQ9ULU8 1353 aa32.36■■■□□ 2.77
HDAC6-208ENST00000438518 CFTRP13569 1480 aa32.33■■■□□ 2.77
HDAC6-208ENST00000438518 PRDM2Q13029 1718 aa32.28■■■□□ 2.76
HDAC6-208ENST00000438518 NESP48681 1621 aa32.22■■■□□ 2.75
HDAC6-208ENST00000438518 PDS5BQ9NTI5 1447 aa32.13■■■□□ 2.73
HDAC6-208ENST00000438518 FANCD2Q9BXW9 1451 aa31.99■■■□□ 2.71
HDAC6-208ENST00000438518 KIF21AQ7Z4S6 1674 aa31.99■■■□□ 2.71
HDAC6-208ENST00000438518 ERCC6Q03468 1493 aa31.97■■■□□ 2.71
HDAC6-208ENST00000438518 CEP164Q9UPV0 1460 aa31.94■■■□□ 2.7
HDAC6-208ENST00000438518 MRC2Q9UBG0 1479 aa31.76■■■□□ 2.67
HDAC6-208ENST00000438518 THOC2Q8NI27 1593 aaKnown RBP31.75■■■□□ 2.67
HDAC6-208ENST00000438518 ABCC8Q09428 1581 aa31.7■■■□□ 2.67
HDAC6-208ENST00000438518 WDR62O43379 1518 aa31.66■■■□□ 2.66
HDAC6-208ENST00000438518 DNMBPQ6XZF7 1577 aa31.63■■■□□ 2.65
HDAC6-208ENST00000438518 URB2Q14146 1524 aaKnown RBP31.6■■■□□ 2.65
HDAC6-208ENST00000438518 WRNQ14191 1432 aaPredicted RBP eCLIP31.56■■■□□ 2.64
HDAC6-208ENST00000438518 TOPBP1Q92547 1522 aa31.55■■■□□ 2.64
HDAC6-208ENST00000438518 CUX1P39880 1505 aa31.51■■■□□ 2.63
HDAC6-208ENST00000438518 BIVM-ERCC5R4GMW8 1640 aa31.5■■■□□ 2.63
HDAC6-208ENST00000438518 CUX2O14529 1486 aa31.49■■■□□ 2.63
HDAC6-208ENST00000438518 TOP2BQ02880 1626 aa31.48■■■□□ 2.63
HDAC6-208ENST00000438518 SYNJ1O43426 1573 aa31.43■■■□□ 2.62
HDAC6-208ENST00000438518 FGD5Q6ZNL6 1462 aa31.33■■■□□ 2.61
HDAC6-208ENST00000438518 POLA1P09884 1462 aaPredicted RBP31.32■■■□□ 2.6
HDAC6-208ENST00000438518 IFT140Q96RY7 1462 aa31.25■■■□□ 2.59
HDAC6-208ENST00000438518 TARBP1Q13395 1621 aaKnown RBP31.2■■■□□ 2.58
HDAC6-208ENST00000438518 SOGA1O94964 1423 aa31.17■■■□□ 2.58
HDAC6-208ENST00000438518 TRIM41Q8WV44 630 aa31.15■■■□□ 2.58
HDAC6-208ENST00000438518 WDR97A6NE52 1622 aa31.14■■■□□ 2.58
HDAC6-208ENST00000438518 CHIC1Q5VXU3 224 aa31.11■■■□□ 2.57
HDAC6-208ENST00000438518 ABCA10Q8WWZ4 1543 aa31.1■■■□□ 2.57
HDAC6-208ENST00000438518 RAD54L2Q9Y4B4 1467 aa31.09■■■□□ 2.57
HDAC6-208ENST00000438518 EIF4G3O43432 1585 aaKnown RBP30.96■■■□□ 2.55
HDAC6-208ENST00000438518 ABCA5Q8WWZ7 1642 aa30.95■■■□□ 2.54
HDAC6-208ENST00000438518 ZNF608Q9ULD9 1512 aaPredicted RBP30.93■■■□□ 2.54
HDAC6-208ENST00000438518 KIF27Q86VH2 1401 aa30.88■■■□□ 2.53
HDAC6-208ENST00000438518 GAPVD1Q14C86 1478 aa30.86■■■□□ 2.53
HDAC6-208ENST00000438518 TDRD9Q8NDG6 1382 aaKnown RBP30.85■■■□□ 2.53
HDAC6-208ENST00000438518 PBRM1Q86U86 1689 aa30.84■■■□□ 2.53
HDAC6-208ENST00000438518 AQRO60306 1485 aaKnown RBP eCLIP30.83■■■□□ 2.533e-8■□□□□ 11.2
HDAC6-208ENST00000438518 GRIN2BQ13224 1484 aa30.8■■■□□ 2.52
HDAC6-208ENST00000438518 ERICH3Q5RHP9 1530 aa30.78■■■□□ 2.52
HDAC6-208ENST00000438518 EEA1Q15075 1411 aa30.76■■■□□ 2.51
HDAC6-208ENST00000438518 MAGI1Q96QZ7 1491 aaPredicted RBP30.7■■■□□ 2.5
HDAC6-208ENST00000438518 CUL7Q14999 1698 aa30.65■■■□□ 2.5
HDAC6-208ENST00000438518 RUSC2Q8N2Y8 1516 aa30.63■■■□□ 2.49
HDAC6-208ENST00000438518 SNAPC4Q5SXM2 1469 aa30.63■■■□□ 2.49
HDAC6-208ENST00000438518 ADAMTS12P58397 1594 aa30.59■■■□□ 2.49
HDAC6-208ENST00000438518 IGF1RP08069 1367 aa30.59■■■□□ 2.49
HDAC6-208ENST00000438518 FHAD1B1AJZ9 1412 aa30.55■■■□□ 2.48
HDAC6-208ENST00000438518 SYNJ2O15056 1496 aa30.53■■■□□ 2.48
HDAC6-208ENST00000438518 CSRNP3Q8WYN3 585 aa30.47■■■□□ 2.47
HDAC6-208ENST00000438518 CHD1O14646 1710 aa30.45■■■□□ 2.47
HDAC6-208ENST00000438518 CARMIL1Q5VZK9 1371 aa30.45■■■□□ 2.47
HDAC6-208ENST00000438518 PRXQ9BXM0 1461 aa30.42■■■□□ 2.46
HDAC6-208ENST00000438518 GRIN2AQ12879 1464 aa30.39■■■□□ 2.46
HDAC6-208ENST00000438518 RAPGEF2Q9Y4G8 1499 aa30.39■■■□□ 2.46
HDAC6-208ENST00000438518 CHMP7Q8WUX9 453 aaPredicted RBP30.38■■■□□ 2.45
HDAC6-208ENST00000438518 KIF21BO75037 1637 aa30.37■■■□□ 2.45
HDAC6-208ENST00000438518 FAM9AQ8IZU1 332 aaPredicted RBP30.36■■■□□ 2.45
HDAC6-208ENST00000438518 FBLN2P98095 1184 aa30.3■■■□□ 2.44
HDAC6-208ENST00000438518 NUP160Q12769 1436 aa30.24■■■□□ 2.43
HDAC6-208ENST00000438518 GOLGA3Q08378 1498 aa30.2■■■□□ 2.43
HDAC6-208ENST00000438518 CEP170Q5SW79 1584 aa30.2■■■□□ 2.42
HDAC6-208ENST00000438518 OSCARQ8IYS5 282 aa30.18■■■□□ 2.42
HDAC6-208ENST00000438518 CTTNBP2Q8WZ74 1663 aa30.16■■■□□ 2.42
HDAC6-208ENST00000438518 CLASP1Q7Z460 1538 aa30.13■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 9145.9 ms