RNA–Protein interactions for RNA: ENST00000438510.5

HLA-DMB-259, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 663 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-259ENST00000438510 NISCHQ9Y2I1 1504 aa25.09■■□□□ 1.61
HLA-DMB-259ENST00000438510 CCDC180Q9P1Z9 1646 aa22.29■■□□□ 1.16
HLA-DMB-259ENST00000438510 ABCC9O60706 1549 aa21.33■■□□□ 1
HLA-DMB-259ENST00000438510 ZCCHC6Q5VYS8 1495 aaKnown RBP20.99■□□□□ 0.95
HLA-DMB-259ENST00000438510 DCAF1Q9Y4B6 1507 aa20.82■□□□□ 0.92
HLA-DMB-259ENST00000438510 NACADO15069 1562 aa20.8■□□□□ 0.92
HLA-DMB-259ENST00000438510 MYO15BQ96JP2 1530 aa20.78■□□□□ 0.92
HLA-DMB-259ENST00000438510 RB1CC1Q8TDY2 1594 aa20.76■□□□□ 0.91
HLA-DMB-259ENST00000438510 DCAF8L2P0C7V8 631 aa20.72■□□□□ 0.91
HLA-DMB-259ENST00000438510 AEBP2Q6ZN18 517 aaPredicted RBP20.7■□□□□ 0.9
HLA-DMB-259ENST00000438510 UNC13AQ9UPW8 1703 aa20.36■□□□□ 0.85
HLA-DMB-259ENST00000438510 SCRIBQ14160 1630 aa20.28■□□□□ 0.84
HLA-DMB-259ENST00000438510 BICRAQ9NZM4 1560 aa20.07■□□□□ 0.8
HLA-DMB-259ENST00000438510 SHROOM4Q9ULL8 1493 aa19.96■□□□□ 0.79
HLA-DMB-259ENST00000438510 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
HLA-DMB-259ENST00000438510 DNAJC5BQ9UF47 199 aa19.7■□□□□ 0.74
HLA-DMB-259ENST00000438510 CHIC1Q5VXU3 224 aa19.61■□□□□ 0.73
HLA-DMB-259ENST00000438510 EIF4G1Q04637 1599 aaKnown RBP19.53■□□□□ 0.72
HLA-DMB-259ENST00000438510 BAZ1AQ9NRL2 1556 aaPredicted RBP19.47■□□□□ 0.71
HLA-DMB-259ENST00000438510 SMARCA4P51532 1647 aa19.45■□□□□ 0.7
HLA-DMB-259ENST00000438510 CECR2Q9BXF3 1484 aa19.45■□□□□ 0.7
HLA-DMB-259ENST00000438510 CC2D2AQ9P2K1 1620 aa19.37■□□□□ 0.69
HLA-DMB-259ENST00000438510 MROH2BQ7Z745 1585 aa19.32■□□□□ 0.68
HLA-DMB-259ENST00000438510 SMARCA2P51531 1590 aa19.25■□□□□ 0.67
HLA-DMB-259ENST00000438510 PEG3Q9GZU2 1588 aa19.25■□□□□ 0.67
HLA-DMB-259ENST00000438510 RSF1Q96T23 1441 aaPredicted RBP19.19■□□□□ 0.66
HLA-DMB-259ENST00000438510 WIZO95785 1651 aa19.18■□□□□ 0.66
HLA-DMB-259ENST00000438510 ATAD2BQ9ULI0 1458 aa19.18■□□□□ 0.66
HLA-DMB-259ENST00000438510 HMGXB3Q12766 1538 aa19.14■□□□□ 0.65
HLA-DMB-259ENST00000438510 NCAPD3P42695 1498 aa19.13■□□□□ 0.65
HLA-DMB-259ENST00000438510 BAZ1BQ9UIG0 1483 aaKnown RBP19.09■□□□□ 0.65
HLA-DMB-259ENST00000438510 TOP2AP11388 1531 aaKnown RBP19■□□□□ 0.63
HLA-DMB-259ENST00000438510 SUPT5HO00267 1087 aaKnown RBP18.9■□□□□ 0.62
HLA-DMB-259ENST00000438510 CCDC88BA6NC98 1476 aa18.71■□□□□ 0.59
HLA-DMB-259ENST00000438510 LAMC3Q9Y6N6 1575 aa18.65■□□□□ 0.58
HLA-DMB-259ENST00000438510 PRDM2Q13029 1718 aa18.64■□□□□ 0.57
HLA-DMB-259ENST00000438510 CADPSQ9ULU8 1353 aa18.57■□□□□ 0.56
HLA-DMB-259ENST00000438510 CFTRP13569 1480 aa18.55■□□□□ 0.56
HLA-DMB-259ENST00000438510 NESP48681 1621 aa18.55■□□□□ 0.56
HLA-DMB-259ENST00000438510 KIF21AQ7Z4S6 1674 aa18.46■□□□□ 0.55
HLA-DMB-259ENST00000438510 PDS5BQ9NTI5 1447 aa18.45■□□□□ 0.54
HLA-DMB-259ENST00000438510 ERCC6Q03468 1493 aa18.4■□□□□ 0.54
HLA-DMB-259ENST00000438510 FANCD2Q9BXW9 1451 aa18.39■□□□□ 0.53
HLA-DMB-259ENST00000438510 CEP164Q9UPV0 1460 aa18.37■□□□□ 0.53
HLA-DMB-259ENST00000438510 THOC2Q8NI27 1593 aaKnown RBP18.29■□□□□ 0.52
HLA-DMB-259ENST00000438510 MRC2Q9UBG0 1479 aa18.26■□□□□ 0.51
HLA-DMB-259ENST00000438510 WDR62O43379 1518 aa18.21■□□□□ 0.51
HLA-DMB-259ENST00000438510 ABCC8Q09428 1581 aa18.2■□□□□ 0.5
HLA-DMB-259ENST00000438510 DNMBPQ6XZF7 1577 aa18.19■□□□□ 0.5
HLA-DMB-259ENST00000438510 URB2Q14146 1524 aaKnown RBP18.17■□□□□ 0.5
HLA-DMB-259ENST00000438510 TOPBP1Q92547 1522 aa18.13■□□□□ 0.49
HLA-DMB-259ENST00000438510 BIVM-ERCC5R4GMW8 1640 aa18.13■□□□□ 0.49
HLA-DMB-259ENST00000438510 WRNQ14191 1432 aaPredicted RBP eCLIP18.12■□□□□ 0.49
HLA-DMB-259ENST00000438510 CUX1P39880 1505 aa18.12■□□□□ 0.49
HLA-DMB-259ENST00000438510 TOP2BQ02880 1626 aa18.1■□□□□ 0.49
HLA-DMB-259ENST00000438510 CUX2O14529 1486 aa18.1■□□□□ 0.49
HLA-DMB-259ENST00000438510 DNAJC5Q9H3Z4 198 aa18.1■□□□□ 0.49
HLA-DMB-259ENST00000438510 SYNJ1O43426 1573 aa18.09■□□□□ 0.49
HLA-DMB-259ENST00000438510 FGD5Q6ZNL6 1462 aa18.01■□□□□ 0.47
HLA-DMB-259ENST00000438510 POLA1P09884 1462 aaPredicted RBP18■□□□□ 0.47
HLA-DMB-259ENST00000438510 IFT140Q96RY7 1462 aa17.95■□□□□ 0.46
HLA-DMB-259ENST00000438510 WDR97A6NE52 1622 aa17.94■□□□□ 0.46
HLA-DMB-259ENST00000438510 TARBP1Q13395 1621 aaKnown RBP17.94■□□□□ 0.46
HLA-DMB-259ENST00000438510 SOGA1O94964 1423 aa17.9■□□□□ 0.46
HLA-DMB-259ENST00000438510 TRIM41Q8WV44 630 aa17.88■□□□□ 0.45
HLA-DMB-259ENST00000438510 RAD54L2Q9Y4B4 1467 aa17.88■□□□□ 0.45
HLA-DMB-259ENST00000438510 SENP3Q9H4L4 574 aaPredicted RBP17.87■□□□□ 0.45
HLA-DMB-259ENST00000438510 ABCA10Q8WWZ4 1543 aa17.86■□□□□ 0.45
HLA-DMB-259ENST00000438510 EIF4G3O43432 1585 aaKnown RBP17.84■□□□□ 0.45
HLA-DMB-259ENST00000438510 ABCA5Q8WWZ7 1642 aa17.81■□□□□ 0.44
HLA-DMB-259ENST00000438510 PBRM1Q86U86 1689 aa17.8■□□□□ 0.44
HLA-DMB-259ENST00000438510 ZNF608Q9ULD9 1512 aaPredicted RBP17.79■□□□□ 0.44
HLA-DMB-259ENST00000438510 GAPVD1Q14C86 1478 aa17.74■□□□□ 0.43
HLA-DMB-259ENST00000438510 TDRD9Q8NDG6 1382 aaKnown RBP17.73■□□□□ 0.43
HLA-DMB-259ENST00000438510 KIF27Q86VH2 1401 aa17.72■□□□□ 0.43
HLA-DMB-259ENST00000438510 AQRO60306 1485 aaKnown RBP eCLIP17.72■□□□□ 0.43
HLA-DMB-259ENST00000438510 GRIN2BQ13224 1484 aa17.69■□□□□ 0.42
HLA-DMB-259ENST00000438510 ERICH3Q5RHP9 1530 aa17.68■□□□□ 0.42
HLA-DMB-259ENST00000438510 CUL7Q14999 1698 aa17.64■□□□□ 0.42
HLA-DMB-259ENST00000438510 EEA1Q15075 1411 aa17.64■□□□□ 0.41
HLA-DMB-259ENST00000438510 MAGI1Q96QZ7 1491 aaPredicted RBP17.63■□□□□ 0.41
HLA-DMB-259ENST00000438510 SNAPC4Q5SXM2 1469 aa17.62■□□□□ 0.41
HLA-DMB-259ENST00000438510 ADAMTS12P58397 1594 aa17.62■□□□□ 0.41
HLA-DMB-259ENST00000438510 RUSC2Q8N2Y8 1516 aa17.6■□□□□ 0.41
HLA-DMB-259ENST00000438510 CHD1O14646 1710 aa17.58■□□□□ 0.41
HLA-DMB-259ENST00000438510 SYNJ2O15056 1496 aa17.55■□□□□ 0.4
HLA-DMB-259ENST00000438510 FHAD1B1AJZ9 1412 aa17.54■□□□□ 0.4
HLA-DMB-259ENST00000438510 IGF1RP08069 1367 aa17.53■□□□□ 0.4
HLA-DMB-259ENST00000438510 PHF23Q9BUL5 403 aaPredicted RBP17.52■□□□□ 0.4
HLA-DMB-259ENST00000438510 CSRNP3Q8WYN3 585 aa17.47■□□□□ 0.39
HLA-DMB-259ENST00000438510 CARMIL1Q5VZK9 1371 aa17.47■□□□□ 0.39
HLA-DMB-259ENST00000438510 GRIN2AQ12879 1464 aa17.47■□□□□ 0.39
HLA-DMB-259ENST00000438510 KIF21BO75037 1637 aa17.47■□□□□ 0.39
HLA-DMB-259ENST00000438510 FAM9AQ8IZU1 332 aaPredicted RBP17.46■□□□□ 0.39
HLA-DMB-259ENST00000438510 CHMP7Q8WUX9 453 aaPredicted RBP17.45■□□□□ 0.38
HLA-DMB-259ENST00000438510 PRXQ9BXM0 1461 aa17.44■□□□□ 0.38
HLA-DMB-259ENST00000438510 RAPGEF2Q9Y4G8 1499 aa17.44■□□□□ 0.38
HLA-DMB-259ENST00000438510 FBLN2P98095 1184 aa17.43■□□□□ 0.38
HLA-DMB-259ENST00000438510 CTTNBP2Q8WZ74 1663 aa17.4■□□□□ 0.38
HLA-DMB-259ENST00000438510 CEP170Q5SW79 1584 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms