RNA–Protein interactions for RNA: ENST00000437681.1

SNHG3-202, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 2 BASIC

Gene SNHG3, Length 2,614 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-202ENST00000437681 NISCHQ9Y2I1 1504 aa27.74■■■□□ 2.03
SNHG3-202ENST00000437681 CCDC180Q9P1Z9 1646 aa24.82■■□□□ 1.56
SNHG3-202ENST00000437681 ABCC9O60706 1549 aa23.54■■□□□ 1.36
SNHG3-202ENST00000437681 MYO15BQ96JP2 1530 aa23.31■■□□□ 1.32
SNHG3-202ENST00000437681 DCAF1Q9Y4B6 1507 aa23.23■■□□□ 1.31
SNHG3-202ENST00000437681 ZCCHC6Q5VYS8 1495 aaKnown RBP23.2■■□□□ 1.3
SNHG3-202ENST00000437681 NACADO15069 1562 aa23.19■■□□□ 1.3
SNHG3-202ENST00000437681 RB1CC1Q8TDY2 1594 aa23.1■■□□□ 1.29
SNHG3-202ENST00000437681 DCAF8L2P0C7V8 631 aa22.52■■□□□ 1.2
SNHG3-202ENST00000437681 UNC13AQ9UPW8 1703 aa22.51■■□□□ 1.19
SNHG3-202ENST00000437681 SHROOM4Q9ULL8 1493 aa22.47■■□□□ 1.19
SNHG3-202ENST00000437681 BICRAQ9NZM4 1560 aa22.29■■□□□ 1.16
SNHG3-202ENST00000437681 SCRIBQ14160 1630 aa22.25■■□□□ 1.15
SNHG3-202ENST00000437681 PABPN1Q86U42 306 aaKnown RBP eCLIP21.87■■□□□ 1.09
SNHG3-202ENST00000437681 EIF4G1Q04637 1599 aaKnown RBP21.67■■□□□ 1.06
SNHG3-202ENST00000437681 BAZ1AQ9NRL2 1556 aaPredicted RBP21.54■■□□□ 1.04
SNHG3-202ENST00000437681 SMARCA4P51532 1647 aa21.49■■□□□ 1.03
SNHG3-202ENST00000437681 CC2D2AQ9P2K1 1620 aa21.49■■□□□ 1.03
SNHG3-202ENST00000437681 PEG3Q9GZU2 1588 aa21.45■■□□□ 1.02
SNHG3-202ENST00000437681 SMARCA2P51531 1590 aa21.39■■□□□ 1.01
SNHG3-202ENST00000437681 CECR2Q9BXF3 1484 aa21.37■■□□□ 1.01
SNHG3-202ENST00000437681 NCAPD3P42695 1498 aa21.32■■□□□ 1
SNHG3-202ENST00000437681 HMGXB3Q12766 1538 aa21.32■■□□□ 1
SNHG3-202ENST00000437681 DNAJC5BQ9UF47 199 aa21.26■□□□□ 0.99
SNHG3-202ENST00000437681 ATAD2BQ9ULI0 1458 aa21.26■□□□□ 0.99
SNHG3-202ENST00000437681 MROH2BQ7Z745 1585 aa21.25■□□□□ 0.99
SNHG3-202ENST00000437681 RSF1Q96T23 1441 aaPredicted RBP21.12■□□□□ 0.97
SNHG3-202ENST00000437681 BAZ1BQ9UIG0 1483 aaKnown RBP21.08■□□□□ 0.97
SNHG3-202ENST00000437681 WIZO95785 1651 aa21.03■□□□□ 0.96
SNHG3-202ENST00000437681 TOP2AP11388 1531 aaKnown RBP21■□□□□ 0.95
SNHG3-202ENST00000437681 LAMC3Q9Y6N6 1575 aa20.77■□□□□ 0.92
SNHG3-202ENST00000437681 PRDM2Q13029 1718 aa20.66■□□□□ 0.9
SNHG3-202ENST00000437681 CADPSQ9ULU8 1353 aa20.61■□□□□ 0.89
SNHG3-202ENST00000437681 CCDC88BA6NC98 1476 aa20.6■□□□□ 0.89
SNHG3-202ENST00000437681 CFTRP13569 1480 aa20.59■□□□□ 0.89
SNHG3-202ENST00000437681 PDS5BQ9NTI5 1447 aa20.53■□□□□ 0.88
SNHG3-202ENST00000437681 NESP48681 1621 aa20.42■□□□□ 0.86
SNHG3-202ENST00000437681 KIF21AQ7Z4S6 1674 aa20.38■□□□□ 0.85
SNHG3-202ENST00000437681 ERCC6Q03468 1493 aa20.36■□□□□ 0.85
SNHG3-202ENST00000437681 SUPT5HO00267 1087 aaKnown RBP20.36■□□□□ 0.85
SNHG3-202ENST00000437681 THOC2Q8NI27 1593 aaKnown RBP20.34■□□□□ 0.85
SNHG3-202ENST00000437681 CUX2O14529 1486 aa20.33■□□□□ 0.85
SNHG3-202ENST00000437681 FANCD2Q9BXW9 1451 aa20.33■□□□□ 0.85
SNHG3-202ENST00000437681 CEP164Q9UPV0 1460 aa20.33■□□□□ 0.84
SNHG3-202ENST00000437681 MRC2Q9UBG0 1479 aa20.3■□□□□ 0.84
SNHG3-202ENST00000437681 ABCC8Q09428 1581 aa20.29■□□□□ 0.84
SNHG3-202ENST00000437681 WDR62O43379 1518 aa20.28■□□□□ 0.84
SNHG3-202ENST00000437681 DNMBPQ6XZF7 1577 aa20.16■□□□□ 0.82
SNHG3-202ENST00000437681 URB2Q14146 1524 aaKnown RBP20.1■□□□□ 0.81
SNHG3-202ENST00000437681 TOPBP1Q92547 1522 aa20.06■□□□□ 0.8
SNHG3-202ENST00000437681 WDR97A6NE52 1622 aa20.05■□□□□ 0.8
SNHG3-202ENST00000437681 BIVM-ERCC5R4GMW8 1640 aa20.03■□□□□ 0.8
SNHG3-202ENST00000437681 TOP2BQ02880 1626 aa19.97■□□□□ 0.79
SNHG3-202ENST00000437681 IFT140Q96RY7 1462 aa19.97■□□□□ 0.79
SNHG3-202ENST00000437681 CUX1P39880 1505 aa19.96■□□□□ 0.79
SNHG3-202ENST00000437681 WRNQ14191 1432 aaPredicted RBP eCLIP19.91■□□□□ 0.78
SNHG3-202ENST00000437681 TARBP1Q13395 1621 aaKnown RBP19.89■□□□□ 0.78
SNHG3-202ENST00000437681 POLA1P09884 1462 aaPredicted RBP19.87■□□□□ 0.77
SNHG3-202ENST00000437681 FGD5Q6ZNL6 1462 aa19.84■□□□□ 0.77
SNHG3-202ENST00000437681 SYNJ1O43426 1573 aa19.83■□□□□ 0.76
SNHG3-202ENST00000437681 ABCA10Q8WWZ4 1543 aa19.8■□□□□ 0.76
SNHG3-202ENST00000437681 SOGA1O94964 1423 aa19.77■□□□□ 0.76
SNHG3-202ENST00000437681 EIF4G3O43432 1585 aaKnown RBP19.71■□□□□ 0.75
SNHG3-202ENST00000437681 ABCA5Q8WWZ7 1642 aa19.71■□□□□ 0.75
SNHG3-202ENST00000437681 RAD54L2Q9Y4B4 1467 aa19.65■□□□□ 0.74
SNHG3-202ENST00000437681 PBRM1Q86U86 1689 aa19.63■□□□□ 0.73
SNHG3-202ENST00000437681 ERICH3Q5RHP9 1530 aa19.62■□□□□ 0.73
SNHG3-202ENST00000437681 GRIN2BQ13224 1484 aa19.62■□□□□ 0.73
SNHG3-202ENST00000437681 ZNF608Q9ULD9 1512 aaPredicted RBP19.61■□□□□ 0.73
SNHG3-202ENST00000437681 MAGI1Q96QZ7 1491 aaPredicted RBP19.61■□□□□ 0.73
SNHG3-202ENST00000437681 GAPVD1Q14C86 1478 aa19.59■□□□□ 0.73
SNHG3-202ENST00000437681 KIF27Q86VH2 1401 aa19.53■□□□□ 0.72
SNHG3-202ENST00000437681 CUL7Q14999 1698 aa19.52■□□□□ 0.72
SNHG3-202ENST00000437681 AQRO60306 1485 aaKnown RBP eCLIP19.51■□□□□ 0.719e-27■■■■■ 34.6
SNHG3-202ENST00000437681 ADAMTS12P58397 1594 aa19.48■□□□□ 0.71
SNHG3-202ENST00000437681 TDRD9Q8NDG6 1382 aaKnown RBP19.47■□□□□ 0.71
SNHG3-202ENST00000437681 EEA1Q15075 1411 aa19.47■□□□□ 0.71
SNHG3-202ENST00000437681 SYNJ2O15056 1496 aa19.47■□□□□ 0.71
SNHG3-202ENST00000437681 SNAPC4Q5SXM2 1469 aa19.45■□□□□ 0.7
SNHG3-202ENST00000437681 FHAD1B1AJZ9 1412 aa19.44■□□□□ 0.7
SNHG3-202ENST00000437681 CHD1O14646 1710 aa19.42■□□□□ 0.7
SNHG3-202ENST00000437681 TRIM41Q8WV44 630 aa19.41■□□□□ 0.7
SNHG3-202ENST00000437681 IGF1RP08069 1367 aa19.35■□□□□ 0.69
SNHG3-202ENST00000437681 GRIN2AQ12879 1464 aa19.33■□□□□ 0.68
SNHG3-202ENST00000437681 CHIC1Q5VXU3 224 aa19.33■□□□□ 0.68
SNHG3-202ENST00000437681 CLASP1Q7Z460 1538 aa19.31■□□□□ 0.68
SNHG3-202ENST00000437681 NUP160Q12769 1436 aa19.3■□□□□ 0.68
SNHG3-202ENST00000437681 OSCARQ8IYS5 282 aa19.28■□□□□ 0.68
SNHG3-202ENST00000437681 PRXQ9BXM0 1461 aa19.24■□□□□ 0.67
SNHG3-202ENST00000437681 CARMIL1Q5VZK9 1371 aa19.24■□□□□ 0.67
SNHG3-202ENST00000437681 CHMP7Q8WUX9 453 aaPredicted RBP19.23■□□□□ 0.67
SNHG3-202ENST00000437681 RAPGEF2Q9Y4G8 1499 aa19.23■□□□□ 0.67
SNHG3-202ENST00000437681 SHROOM2Q13796 1616 aa19.21■□□□□ 0.67
SNHG3-202ENST00000437681 KIF21BO75037 1637 aa19.2■□□□□ 0.66
SNHG3-202ENST00000437681 CEP170Q5SW79 1584 aa19.2■□□□□ 0.66
SNHG3-202ENST00000437681 DNAJC5Q9H3Z4 198 aa19.19■□□□□ 0.66
SNHG3-202ENST00000437681 RUSC2Q8N2Y8 1516 aa19.18■□□□□ 0.66
SNHG3-202ENST00000437681 KIAA0586Q9BVV6 1533 aa19.16■□□□□ 0.66
SNHG3-202ENST00000437681 CTTNBP2Q8WZ74 1663 aa19.13■□□□□ 0.65
SNHG3-202ENST00000437681 CSRNP3Q8WYN3 585 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms