RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 NISCHQ9Y2I1 1504 aa37.06■■■■□ 3.52
LIMS3-201ENST00000437679 CCDC180Q9P1Z9 1646 aa33.02■■■□□ 2.88
LIMS3-201ENST00000437679 ABCC9O60706 1549 aa32.48■■■□□ 2.79
LIMS3-201ENST00000437679 RB1CC1Q8TDY2 1594 aa31.18■■■□□ 2.58
LIMS3-201ENST00000437679 NACADO15069 1562 aa31.1■■■□□ 2.57
LIMS3-201ENST00000437679 DCAF8L2P0C7V8 631 aa31.1■■■□□ 2.57
LIMS3-201ENST00000437679 MYO15BQ96JP2 1530 aa30.84■■■□□ 2.53
LIMS3-201ENST00000437679 ZCCHC6Q5VYS8 1495 aaKnown RBP30.83■■■□□ 2.53
LIMS3-201ENST00000437679 DCAF1Q9Y4B6 1507 aa30.66■■■□□ 2.5
LIMS3-201ENST00000437679 UNC13AQ9UPW8 1703 aa30.44■■■□□ 2.46
LIMS3-201ENST00000437679 PABPN1Q86U42 306 aaKnown RBP eCLIP30.34■■■□□ 2.45
LIMS3-201ENST00000437679 BICRAQ9NZM4 1560 aa30.2■■■□□ 2.42
LIMS3-201ENST00000437679 SCRIBQ14160 1630 aa30.12■■■□□ 2.41
LIMS3-201ENST00000437679 DNAJC5BQ9UF47 199 aa29.93■■■□□ 2.38
LIMS3-201ENST00000437679 SHROOM4Q9ULL8 1493 aa29.9■■■□□ 2.38
LIMS3-201ENST00000437679 EIF4G1Q04637 1599 aaKnown RBP29.43■■■□□ 2.3
LIMS3-201ENST00000437679 CC2D2AQ9P2K1 1620 aa29.37■■■□□ 2.29
LIMS3-201ENST00000437679 CECR2Q9BXF3 1484 aa29.21■■■□□ 2.27
LIMS3-201ENST00000437679 SMARCA4P51532 1647 aa28.8■■■□□ 2.2
LIMS3-201ENST00000437679 BAZ1AQ9NRL2 1556 aaPredicted RBP28.75■■■□□ 2.19
LIMS3-201ENST00000437679 NCAPD3P42695 1498 aa28.69■■■□□ 2.18
LIMS3-201ENST00000437679 ATAD2BQ9ULI0 1458 aa28.68■■■□□ 2.18
LIMS3-201ENST00000437679 SMARCA2P51531 1590 aa28.66■■■□□ 2.18
LIMS3-201ENST00000437679 MROH2BQ7Z745 1585 aa28.55■■■□□ 2.16
LIMS3-201ENST00000437679 HMGXB3Q12766 1538 aa28.53■■■□□ 2.16
LIMS3-201ENST00000437679 PEG3Q9GZU2 1588 aa28.5■■■□□ 2.15
LIMS3-201ENST00000437679 BAZ1BQ9UIG0 1483 aaKnown RBP28.46■■■□□ 2.15
LIMS3-201ENST00000437679 WIZO95785 1651 aa28.25■■■□□ 2.11
LIMS3-201ENST00000437679 RSF1Q96T23 1441 aaPredicted RBP28.18■■■□□ 2.1
LIMS3-201ENST00000437679 NESP48681 1621 aa28.04■■■□□ 2.08
LIMS3-201ENST00000437679 ERCC6Q03468 1493 aa28.04■■■□□ 2.08
LIMS3-201ENST00000437679 LAMC3Q9Y6N6 1575 aa27.96■■■□□ 2.07
LIMS3-201ENST00000437679 TOP2AP11388 1531 aaKnown RBP27.94■■■□□ 2.06
LIMS3-201ENST00000437679 CADPSQ9ULU8 1353 aa27.86■■■□□ 2.05
LIMS3-201ENST00000437679 PDS5BQ9NTI5 1447 aa27.81■■■□□ 2.04
LIMS3-201ENST00000437679 CUX2O14529 1486 aa27.77■■■□□ 2.04
LIMS3-201ENST00000437679 KIF21AQ7Z4S6 1674 aa27.72■■■□□ 2.03
LIMS3-201ENST00000437679 THOC2Q8NI27 1593 aaKnown RBP27.65■■■□□ 2.02
LIMS3-201ENST00000437679 CFTRP13569 1480 aa27.64■■■□□ 2.02
LIMS3-201ENST00000437679 CCDC88BA6NC98 1476 aa27.62■■■□□ 2.01
LIMS3-201ENST00000437679 FANCD2Q9BXW9 1451 aa27.54■■■□□ 2
LIMS3-201ENST00000437679 CEP164Q9UPV0 1460 aa27.53■■■□□ 2
LIMS3-201ENST00000437679 MRC2Q9UBG0 1479 aa27.51■■■□□ 2
LIMS3-201ENST00000437679 PRDM2Q13029 1718 aa27.44■■□□□ 1.98
LIMS3-201ENST00000437679 WDR62O43379 1518 aa27.41■■□□□ 1.98
LIMS3-201ENST00000437679 SUPT5HO00267 1087 aaKnown RBP27.4■■□□□ 1.98
LIMS3-201ENST00000437679 URB2Q14146 1524 aaKnown RBP27.26■■□□□ 1.95
LIMS3-201ENST00000437679 DNAJC5Q9H3Z4 198 aa27.11■■□□□ 1.93
LIMS3-201ENST00000437679 ABCC8Q09428 1581 aa27.09■■□□□ 1.93
LIMS3-201ENST00000437679 TOPBP1Q92547 1522 aa27.07■■□□□ 1.92
LIMS3-201ENST00000437679 DNMBPQ6XZF7 1577 aa27.03■■□□□ 1.92
LIMS3-201ENST00000437679 IFT140Q96RY7 1462 aa26.95■■□□□ 1.91
LIMS3-201ENST00000437679 POLA1P09884 1462 aaPredicted RBP26.83■■□□□ 1.89
LIMS3-201ENST00000437679 ZNF608Q9ULD9 1512 aaPredicted RBP26.82■■□□□ 1.88
LIMS3-201ENST00000437679 CUX1P39880 1505 aa26.8■■□□□ 1.88
LIMS3-201ENST00000437679 TARBP1Q13395 1621 aaKnown RBP26.77■■□□□ 1.88
LIMS3-201ENST00000437679 FGD5Q6ZNL6 1462 aa26.74■■□□□ 1.87
LIMS3-201ENST00000437679 SOGA1O94964 1423 aa26.74■■□□□ 1.87
LIMS3-201ENST00000437679 RAD54L2Q9Y4B4 1467 aa26.72■■□□□ 1.87
LIMS3-201ENST00000437679 EIF4G3O43432 1585 aaKnown RBP26.71■■□□□ 1.87
LIMS3-201ENST00000437679 AQRO60306 1485 aaKnown RBP eCLIP26.67■■□□□ 1.86
LIMS3-201ENST00000437679 OSCARQ8IYS5 282 aa26.62■■□□□ 1.85
LIMS3-201ENST00000437679 TDRD9Q8NDG6 1382 aaKnown RBP26.6■■□□□ 1.85
LIMS3-201ENST00000437679 WRNQ14191 1432 aaPredicted RBP eCLIP26.59■■□□□ 1.85
LIMS3-201ENST00000437679 WDR97A6NE52 1622 aa26.57■■□□□ 1.84
LIMS3-201ENST00000437679 TOP2BQ02880 1626 aa26.54■■□□□ 1.84
LIMS3-201ENST00000437679 BIVM-ERCC5R4GMW8 1640 aa26.53■■□□□ 1.84
LIMS3-201ENST00000437679 SYNJ1O43426 1573 aa26.5■■□□□ 1.83
LIMS3-201ENST00000437679 ABCA10Q8WWZ4 1543 aa26.48■■□□□ 1.83
LIMS3-201ENST00000437679 GRIN2BQ13224 1484 aa26.44■■□□□ 1.82
LIMS3-201ENST00000437679 FBLN2P98095 1184 aa26.43■■□□□ 1.82
LIMS3-201ENST00000437679 GAPVD1Q14C86 1478 aa26.42■■□□□ 1.82
LIMS3-201ENST00000437679 CHD1O14646 1710 aa26.42■■□□□ 1.82
LIMS3-201ENST00000437679 SNAPC4Q5SXM2 1469 aa26.42■■□□□ 1.82
LIMS3-201ENST00000437679 MAGI1Q96QZ7 1491 aaPredicted RBP26.38■■□□□ 1.81
LIMS3-201ENST00000437679 ABCA5Q8WWZ7 1642 aa26.38■■□□□ 1.81
LIMS3-201ENST00000437679 PBRM1Q86U86 1689 aa26.37■■□□□ 1.81
LIMS3-201ENST00000437679 CHMP7Q8WUX9 453 aaPredicted RBP26.33■■□□□ 1.81
LIMS3-201ENST00000437679 SYNJ2O15056 1496 aa26.29■■□□□ 1.8
LIMS3-201ENST00000437679 TRIM41Q8WV44 630 aa26.19■■□□□ 1.78
LIMS3-201ENST00000437679 RIMBP3CA6NJZ7 1639 aa26.17■■□□□ 1.78
LIMS3-201ENST00000437679 RIMBP3BA6NNM3 1639 aa26.17■■□□□ 1.78
LIMS3-201ENST00000437679 RIMBP3Q9UFD9 1639 aa26.17■■□□□ 1.78
LIMS3-201ENST00000437679 ERICH3Q5RHP9 1530 aa26.17■■□□□ 1.78
LIMS3-201ENST00000437679 ARHGEF11O15085 1522 aa26.16■■□□□ 1.78
LIMS3-201ENST00000437679 ADAMTS12P58397 1594 aa26.14■■□□□ 1.78
LIMS3-201ENST00000437679 CLASP1Q7Z460 1538 aa26.11■■□□□ 1.77
LIMS3-201ENST00000437679 FHAD1B1AJZ9 1412 aa26.11■■□□□ 1.77
LIMS3-201ENST00000437679 GRIN2AQ12879 1464 aa26.1■■□□□ 1.77
LIMS3-201ENST00000437679 KIF27Q86VH2 1401 aa26.06■■□□□ 1.76
LIMS3-201ENST00000437679 NUP160Q12769 1436 aa25.97■■□□□ 1.75
LIMS3-201ENST00000437679 CYB5RLQ6IPT4 315 aa25.96■■□□□ 1.75
LIMS3-201ENST00000437679 IGF1RP08069 1367 aa25.95■■□□□ 1.75
LIMS3-201ENST00000437679 CEP170Q5SW79 1584 aa25.95■■□□□ 1.75
LIMS3-201ENST00000437679 ARAP1Q96P48 1450 aa25.92■■□□□ 1.74
LIMS3-201ENST00000437679 CUL7Q14999 1698 aa25.9■■□□□ 1.74
LIMS3-201ENST00000437679 CARMIL1Q5VZK9 1371 aa25.82■■□□□ 1.72
LIMS3-201ENST00000437679 SHROOM2Q13796 1616 aa25.78■■□□□ 1.72
LIMS3-201ENST00000437679 RUSC2Q8N2Y8 1516 aa25.75■■□□□ 1.71
LIMS3-201ENST00000437679 JPH4Q96JJ6 628 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms