RNA–Protein interactions for RNA: ENST00000436754.5

PDLIM2-211, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5

Gene PDLIM2, Length 507 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-211ENST00000436754 NISCHQ9Y2I1 1504 aa27.28■■□□□ 1.96
PDLIM2-211ENST00000436754 CCDC180Q9P1Z9 1646 aa24.47■■□□□ 1.51
PDLIM2-211ENST00000436754 ABCC9O60706 1549 aa24.45■■□□□ 1.5
PDLIM2-211ENST00000436754 RB1CC1Q8TDY2 1594 aa23.31■■□□□ 1.32
PDLIM2-211ENST00000436754 NACADO15069 1562 aa23.18■■□□□ 1.3
PDLIM2-211ENST00000436754 DNAJC5BQ9UF47 199 aa23.03■■□□□ 1.28
PDLIM2-211ENST00000436754 DCAF8L2P0C7V8 631 aa22.99■■□□□ 1.27
PDLIM2-211ENST00000436754 MYO15BQ96JP2 1530 aa22.92■■□□□ 1.26
PDLIM2-211ENST00000436754 PABPN1Q86U42 306 aaKnown RBP eCLIP22.78■■□□□ 1.24
PDLIM2-211ENST00000436754 UNC13AQ9UPW8 1703 aa22.72■■□□□ 1.23
PDLIM2-211ENST00000436754 BICRAQ9NZM4 1560 aa22.63■■□□□ 1.21
PDLIM2-211ENST00000436754 DCAF1Q9Y4B6 1507 aa22.59■■□□□ 1.21
PDLIM2-211ENST00000436754 ZCCHC6Q5VYS8 1495 aaKnown RBP22.58■■□□□ 1.2
PDLIM2-211ENST00000436754 SHROOM4Q9ULL8 1493 aa22.39■■□□□ 1.17
PDLIM2-211ENST00000436754 SCRIBQ14160 1630 aa22.21■■□□□ 1.15
PDLIM2-211ENST00000436754 CC2D2AQ9P2K1 1620 aa22.11■■□□□ 1.13
PDLIM2-211ENST00000436754 CECR2Q9BXF3 1484 aa22.07■■□□□ 1.12
PDLIM2-211ENST00000436754 EIF4G1Q04637 1599 aaKnown RBP22.07■■□□□ 1.12
PDLIM2-211ENST00000436754 NCAPD3P42695 1498 aa21.43■■□□□ 1.02
PDLIM2-211ENST00000436754 ATAD2BQ9ULI0 1458 aa21.32■■□□□ 1
PDLIM2-211ENST00000436754 SMARCA2P51531 1590 aa21.25■□□□□ 0.99
PDLIM2-211ENST00000436754 SMARCA4P51532 1647 aa21.24■□□□□ 0.99
PDLIM2-211ENST00000436754 DNAJC5Q9H3Z4 198 aa21.23■□□□□ 0.99
PDLIM2-211ENST00000436754 HMGXB3Q12766 1538 aa21.21■□□□□ 0.99
PDLIM2-211ENST00000436754 BAZ1AQ9NRL2 1556 aaPredicted RBP21.17■□□□□ 0.98
PDLIM2-211ENST00000436754 CUX2O14529 1486 aa21.15■□□□□ 0.98
PDLIM2-211ENST00000436754 ERCC6Q03468 1493 aa21.12■□□□□ 0.97
PDLIM2-211ENST00000436754 PEG3Q9GZU2 1588 aa21.1■□□□□ 0.97
PDLIM2-211ENST00000436754 BAZ1BQ9UIG0 1483 aaKnown RBP21.07■□□□□ 0.96
PDLIM2-211ENST00000436754 NESP48681 1621 aa21■□□□□ 0.95
PDLIM2-211ENST00000436754 MROH2BQ7Z745 1585 aa20.98■□□□□ 0.95
PDLIM2-211ENST00000436754 LAMC3Q9Y6N6 1575 aa20.9■□□□□ 0.94
PDLIM2-211ENST00000436754 PDS5BQ9NTI5 1447 aa20.81■□□□□ 0.92
PDLIM2-211ENST00000436754 THOC2Q8NI27 1593 aaKnown RBP20.79■□□□□ 0.92
PDLIM2-211ENST00000436754 CADPSQ9ULU8 1353 aa20.76■□□□□ 0.91
PDLIM2-211ENST00000436754 WIZO95785 1651 aa20.7■□□□□ 0.91
PDLIM2-211ENST00000436754 KIF21AQ7Z4S6 1674 aa20.7■□□□□ 0.9
PDLIM2-211ENST00000436754 MRC2Q9UBG0 1479 aa20.58■□□□□ 0.89
PDLIM2-211ENST00000436754 RSF1Q96T23 1441 aaPredicted RBP20.58■□□□□ 0.88
PDLIM2-211ENST00000436754 WDR62O43379 1518 aa20.54■□□□□ 0.88
PDLIM2-211ENST00000436754 CFTRP13569 1480 aa20.51■□□□□ 0.87
PDLIM2-211ENST00000436754 CEP164Q9UPV0 1460 aa20.49■□□□□ 0.87
PDLIM2-211ENST00000436754 TOP2AP11388 1531 aaKnown RBP20.48■□□□□ 0.87
PDLIM2-211ENST00000436754 FANCD2Q9BXW9 1451 aa20.47■□□□□ 0.87
PDLIM2-211ENST00000436754 URB2Q14146 1524 aaKnown RBP20.3■□□□□ 0.84
PDLIM2-211ENST00000436754 CCDC88BA6NC98 1476 aa20.26■□□□□ 0.83
PDLIM2-211ENST00000436754 OSCARQ8IYS5 282 aa20.23■□□□□ 0.83
PDLIM2-211ENST00000436754 PRDM2Q13029 1718 aa20.22■□□□□ 0.83
PDLIM2-211ENST00000436754 TRIM41Q8WV44 630 aa20.16■□□□□ 0.82
PDLIM2-211ENST00000436754 IFT140Q96RY7 1462 aa20.11■□□□□ 0.81
PDLIM2-211ENST00000436754 ABCC8Q09428 1581 aa20.11■□□□□ 0.81
PDLIM2-211ENST00000436754 TOPBP1Q92547 1522 aa20.08■□□□□ 0.81
PDLIM2-211ENST00000436754 ZNF608Q9ULD9 1512 aaPredicted RBP20.04■□□□□ 0.8
PDLIM2-211ENST00000436754 DNMBPQ6XZF7 1577 aa20■□□□□ 0.79
PDLIM2-211ENST00000436754 TARBP1Q13395 1621 aaKnown RBP19.91■□□□□ 0.78
PDLIM2-211ENST00000436754 EIF4G3O43432 1585 aaKnown RBP19.9■□□□□ 0.78
PDLIM2-211ENST00000436754 AQRO60306 1485 aaKnown RBP eCLIP19.87■□□□□ 0.77
PDLIM2-211ENST00000436754 POLA1P09884 1462 aaPredicted RBP19.87■□□□□ 0.77
PDLIM2-211ENST00000436754 RIMBP3CA6NJZ7 1639 aa19.87■□□□□ 0.77
PDLIM2-211ENST00000436754 RIMBP3BA6NNM3 1639 aa19.87■□□□□ 0.77
PDLIM2-211ENST00000436754 RIMBP3Q9UFD9 1639 aa19.87■□□□□ 0.77
PDLIM2-211ENST00000436754 SOGA1O94964 1423 aa19.82■□□□□ 0.76
PDLIM2-211ENST00000436754 ARHGEF11O15085 1522 aa19.81■□□□□ 0.76
PDLIM2-211ENST00000436754 SUPT5HO00267 1087 aaKnown RBP19.8■□□□□ 0.76
PDLIM2-211ENST00000436754 RAD54L2Q9Y4B4 1467 aa19.79■□□□□ 0.76
PDLIM2-211ENST00000436754 TDRD9Q8NDG6 1382 aaKnown RBP19.75■□□□□ 0.75
PDLIM2-211ENST00000436754 WDR97A6NE52 1622 aa19.75■□□□□ 0.75
PDLIM2-211ENST00000436754 CHD1O14646 1710 aa19.74■□□□□ 0.75
PDLIM2-211ENST00000436754 FBLN2P98095 1184 aa19.73■□□□□ 0.75
PDLIM2-211ENST00000436754 FGD5Q6ZNL6 1462 aa19.73■□□□□ 0.75
PDLIM2-211ENST00000436754 CYB5RLQ6IPT4 315 aa19.71■□□□□ 0.75
PDLIM2-211ENST00000436754 CUX1P39880 1505 aa19.71■□□□□ 0.75
PDLIM2-211ENST00000436754 SNAPC4Q5SXM2 1469 aa19.65■□□□□ 0.74
PDLIM2-211ENST00000436754 MAGI1Q96QZ7 1491 aaPredicted RBP19.65■□□□□ 0.74
PDLIM2-211ENST00000436754 CHMP7Q8WUX9 453 aaPredicted RBP19.64■□□□□ 0.73
PDLIM2-211ENST00000436754 GRIN2BQ13224 1484 aa19.64■□□□□ 0.73
PDLIM2-211ENST00000436754 ARAP1Q96P48 1450 aa19.61■□□□□ 0.73
PDLIM2-211ENST00000436754 CLASP1Q7Z460 1538 aa19.58■□□□□ 0.73
PDLIM2-211ENST00000436754 SYNJ2O15056 1496 aa19.58■□□□□ 0.72
PDLIM2-211ENST00000436754 SYNJ1O43426 1573 aa19.56■□□□□ 0.72
PDLIM2-211ENST00000436754 GAPVD1Q14C86 1478 aa19.55■□□□□ 0.72
PDLIM2-211ENST00000436754 ABCA10Q8WWZ4 1543 aa19.55■□□□□ 0.72
PDLIM2-211ENST00000436754 ABCA5Q8WWZ7 1642 aa19.48■□□□□ 0.71
PDLIM2-211ENST00000436754 PBRM1Q86U86 1689 aa19.48■□□□□ 0.71
PDLIM2-211ENST00000436754 WRNQ14191 1432 aaPredicted RBP eCLIP19.47■□□□□ 0.71
PDLIM2-211ENST00000436754 TRHP20396 242 aaPredicted RBP19.46■□□□□ 0.71
PDLIM2-211ENST00000436754 TOP2BQ02880 1626 aa19.41■□□□□ 0.7
PDLIM2-211ENST00000436754 BIVM-ERCC5R4GMW8 1640 aa19.4■□□□□ 0.7
PDLIM2-211ENST00000436754 GRIN2AQ12879 1464 aa19.36■□□□□ 0.69
PDLIM2-211ENST00000436754 FHAD1B1AJZ9 1412 aa19.33■□□□□ 0.68
PDLIM2-211ENST00000436754 NUP160Q12769 1436 aa19.33■□□□□ 0.68
PDLIM2-211ENST00000436754 ADAMTS12P58397 1594 aa19.32■□□□□ 0.68
PDLIM2-211ENST00000436754 ERICH3Q5RHP9 1530 aa19.3■□□□□ 0.68
PDLIM2-211ENST00000436754 CEP170Q5SW79 1584 aa19.27■□□□□ 0.68
PDLIM2-211ENST00000436754 SHROOM2Q13796 1616 aa19.23■□□□□ 0.67
PDLIM2-211ENST00000436754 ERCC6L2Q5T890 1561 aa19.23■□□□□ 0.67
PDLIM2-211ENST00000436754 JPH4Q96JJ6 628 aa19.17■□□□□ 0.66
PDLIM2-211ENST00000436754 PRG4Q92954 1404 aaPredicted RBP19.12■□□□□ 0.65
PDLIM2-211ENST00000436754 IGF1RP08069 1367 aa19.08■□□□□ 0.65
PDLIM2-211ENST00000436754 KIF27Q86VH2 1401 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms