RNA–Protein interactions for RNA: ENST00000436439.6

HMGCL-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 2 BASIC

Gene HMGCL, Length 1,354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-204ENST00000436439 NISCHQ9Y2I1 1504 aa26.97■■□□□ 1.91
HMGCL-204ENST00000436439 CCDC180Q9P1Z9 1646 aa24.21■■□□□ 1.47
HMGCL-204ENST00000436439 ABCC9O60706 1549 aa24.16■■□□□ 1.46
HMGCL-204ENST00000436439 RB1CC1Q8TDY2 1594 aa23■■□□□ 1.27
HMGCL-204ENST00000436439 NACADO15069 1562 aa22.83■■□□□ 1.25
HMGCL-204ENST00000436439 DCAF8L2P0C7V8 631 aa22.69■■□□□ 1.22
HMGCL-204ENST00000436439 DNAJC5BQ9UF47 199 aa22.63■■□□□ 1.21
HMGCL-204ENST00000436439 UNC13AQ9UPW8 1703 aa22.62■■□□□ 1.21
HMGCL-204ENST00000436439 MYO15BQ96JP2 1530 aa22.52■■□□□ 1.2
HMGCL-204ENST00000436439 PABPN1Q86U42 306 aaKnown RBP eCLIP22.48■■□□□ 1.19
HMGCL-204ENST00000436439 BICRAQ9NZM4 1560 aa22.39■■□□□ 1.18
HMGCL-204ENST00000436439 ZCCHC6Q5VYS8 1495 aaKnown RBP22.37■■□□□ 1.17
HMGCL-204ENST00000436439 DCAF1Q9Y4B6 1507 aa22.26■■□□□ 1.15
HMGCL-204ENST00000436439 SCRIBQ14160 1630 aa22.08■■□□□ 1.13
HMGCL-204ENST00000436439 SHROOM4Q9ULL8 1493 aa21.99■■□□□ 1.11
HMGCL-204ENST00000436439 CC2D2AQ9P2K1 1620 aa21.85■■□□□ 1.09
HMGCL-204ENST00000436439 EIF4G1Q04637 1599 aaKnown RBP21.8■■□□□ 1.08
HMGCL-204ENST00000436439 CECR2Q9BXF3 1484 aa21.73■■□□□ 1.07
HMGCL-204ENST00000436439 NCAPD3P42695 1498 aa21.07■□□□□ 0.96
HMGCL-204ENST00000436439 SMARCA4P51532 1647 aa21.06■□□□□ 0.96
HMGCL-204ENST00000436439 ATAD2BQ9ULI0 1458 aa21.03■□□□□ 0.96
HMGCL-204ENST00000436439 SMARCA2P51531 1590 aa20.97■□□□□ 0.95
HMGCL-204ENST00000436439 HMGXB3Q12766 1538 aa20.95■□□□□ 0.94
HMGCL-204ENST00000436439 BAZ1AQ9NRL2 1556 aaPredicted RBP20.92■□□□□ 0.94
HMGCL-204ENST00000436439 PEG3Q9GZU2 1588 aa20.84■□□□□ 0.93
HMGCL-204ENST00000436439 BAZ1BQ9UIG0 1483 aaKnown RBP20.82■□□□□ 0.92
HMGCL-204ENST00000436439 MROH2BQ7Z745 1585 aa20.82■□□□□ 0.92
HMGCL-204ENST00000436439 ERCC6Q03468 1493 aa20.81■□□□□ 0.92
HMGCL-204ENST00000436439 NESP48681 1621 aa20.79■□□□□ 0.92
HMGCL-204ENST00000436439 CUX2O14529 1486 aa20.77■□□□□ 0.92
HMGCL-204ENST00000436439 DNAJC5Q9H3Z4 198 aa20.7■□□□□ 0.9
HMGCL-204ENST00000436439 LAMC3Q9Y6N6 1575 aa20.62■□□□□ 0.89
HMGCL-204ENST00000436439 WIZO95785 1651 aa20.6■□□□□ 0.89
HMGCL-204ENST00000436439 THOC2Q8NI27 1593 aaKnown RBP20.59■□□□□ 0.89
HMGCL-204ENST00000436439 KIF21AQ7Z4S6 1674 aa20.58■□□□□ 0.88
HMGCL-204ENST00000436439 PDS5BQ9NTI5 1447 aa20.44■□□□□ 0.86
HMGCL-204ENST00000436439 CADPSQ9ULU8 1353 aa20.42■□□□□ 0.86
HMGCL-204ENST00000436439 RSF1Q96T23 1441 aaPredicted RBP20.36■□□□□ 0.85
HMGCL-204ENST00000436439 MRC2Q9UBG0 1479 aa20.3■□□□□ 0.84
HMGCL-204ENST00000436439 TOP2AP11388 1531 aaKnown RBP20.28■□□□□ 0.84
HMGCL-204ENST00000436439 WDR62O43379 1518 aa20.27■□□□□ 0.84
HMGCL-204ENST00000436439 CEP164Q9UPV0 1460 aa20.23■□□□□ 0.83
HMGCL-204ENST00000436439 CFTRP13569 1480 aa20.22■□□□□ 0.83
HMGCL-204ENST00000436439 FANCD2Q9BXW9 1451 aa20.21■□□□□ 0.83
HMGCL-204ENST00000436439 PRDM2Q13029 1718 aa20.12■□□□□ 0.81
HMGCL-204ENST00000436439 URB2Q14146 1524 aaKnown RBP20.08■□□□□ 0.8
HMGCL-204ENST00000436439 CCDC88BA6NC98 1476 aa20.05■□□□□ 0.8
HMGCL-204ENST00000436439 TOPBP1Q92547 1522 aa19.85■□□□□ 0.77
HMGCL-204ENST00000436439 ZNF608Q9ULD9 1512 aaPredicted RBP19.83■□□□□ 0.77
HMGCL-204ENST00000436439 TRIM41Q8WV44 630 aa19.82■□□□□ 0.76
HMGCL-204ENST00000436439 IFT140Q96RY7 1462 aa19.81■□□□□ 0.76
HMGCL-204ENST00000436439 OSCARQ8IYS5 282 aa19.79■□□□□ 0.76
HMGCL-204ENST00000436439 DNMBPQ6XZF7 1577 aa19.79■□□□□ 0.76
HMGCL-204ENST00000436439 ABCC8Q09428 1581 aa19.75■□□□□ 0.75
HMGCL-204ENST00000436439 EIF4G3O43432 1585 aaKnown RBP19.74■□□□□ 0.75
HMGCL-204ENST00000436439 TARBP1Q13395 1621 aaKnown RBP19.71■□□□□ 0.75
HMGCL-204ENST00000436439 POLA1P09884 1462 aaPredicted RBP19.65■□□□□ 0.74
HMGCL-204ENST00000436439 RIMBP3CA6NJZ7 1639 aa19.64■□□□□ 0.73
HMGCL-204ENST00000436439 RIMBP3BA6NNM3 1639 aa19.64■□□□□ 0.73
HMGCL-204ENST00000436439 RIMBP3Q9UFD9 1639 aa19.64■□□□□ 0.73
HMGCL-204ENST00000436439 AQRO60306 1485 aaKnown RBP eCLIP19.63■□□□□ 0.73
HMGCL-204ENST00000436439 CHD1O14646 1710 aa19.62■□□□□ 0.73
HMGCL-204ENST00000436439 RAD54L2Q9Y4B4 1467 aa19.59■□□□□ 0.73
HMGCL-204ENST00000436439 ARHGEF11O15085 1522 aa19.54■□□□□ 0.72
HMGCL-204ENST00000436439 CUX1P39880 1505 aa19.54■□□□□ 0.72
HMGCL-204ENST00000436439 FGD5Q6ZNL6 1462 aa19.53■□□□□ 0.72
HMGCL-204ENST00000436439 SOGA1O94964 1423 aa19.53■□□□□ 0.72
HMGCL-204ENST00000436439 TDRD9Q8NDG6 1382 aaKnown RBP19.5■□□□□ 0.71
HMGCL-204ENST00000436439 WDR97A6NE52 1622 aa19.47■□□□□ 0.71
HMGCL-204ENST00000436439 SUPT5HO00267 1087 aaKnown RBP19.45■□□□□ 0.7
HMGCL-204ENST00000436439 FBLN2P98095 1184 aa19.44■□□□□ 0.7
HMGCL-204ENST00000436439 SNAPC4Q5SXM2 1469 aa19.44■□□□□ 0.7
HMGCL-204ENST00000436439 PBRM1Q86U86 1689 aa19.39■□□□□ 0.69
HMGCL-204ENST00000436439 ARAP1Q96P48 1450 aa19.37■□□□□ 0.69
HMGCL-204ENST00000436439 GRIN2BQ13224 1484 aa19.36■□□□□ 0.69
HMGCL-204ENST00000436439 MAGI1Q96QZ7 1491 aaPredicted RBP19.36■□□□□ 0.69
HMGCL-204ENST00000436439 CYB5RLQ6IPT4 315 aa19.35■□□□□ 0.69
HMGCL-204ENST00000436439 CLASP1Q7Z460 1538 aa19.35■□□□□ 0.69
HMGCL-204ENST00000436439 ABCA5Q8WWZ7 1642 aa19.32■□□□□ 0.68
HMGCL-204ENST00000436439 GAPVD1Q14C86 1478 aa19.31■□□□□ 0.68
HMGCL-204ENST00000436439 SYNJ1O43426 1573 aa19.31■□□□□ 0.68
HMGCL-204ENST00000436439 ABCA10Q8WWZ4 1543 aa19.3■□□□□ 0.68
HMGCL-204ENST00000436439 CHMP7Q8WUX9 453 aaPredicted RBP19.3■□□□□ 0.68
HMGCL-204ENST00000436439 SYNJ2O15056 1496 aa19.29■□□□□ 0.68
HMGCL-204ENST00000436439 BIVM-ERCC5R4GMW8 1640 aa19.27■□□□□ 0.67
HMGCL-204ENST00000436439 TOP2BQ02880 1626 aa19.24■□□□□ 0.67
HMGCL-204ENST00000436439 WRNQ14191 1432 aaPredicted RBP eCLIP19.19■□□□□ 0.66
HMGCL-204ENST00000436439 ADAMTS12P58397 1594 aa19.16■□□□□ 0.66
HMGCL-204ENST00000436439 GRIN2AQ12879 1464 aa19.13■□□□□ 0.65
HMGCL-204ENST00000436439 TRHP20396 242 aaPredicted RBP19.11■□□□□ 0.65
HMGCL-204ENST00000436439 CEP170Q5SW79 1584 aa19.1■□□□□ 0.65
HMGCL-204ENST00000436439 ERCC6L2Q5T890 1561 aa19.09■□□□□ 0.65
HMGCL-204ENST00000436439 NUP160Q12769 1436 aa19.06■□□□□ 0.64
HMGCL-204ENST00000436439 ERICH3Q5RHP9 1530 aa19.06■□□□□ 0.64
HMGCL-204ENST00000436439 FHAD1B1AJZ9 1412 aa19.05■□□□□ 0.64
HMGCL-204ENST00000436439 SHROOM2Q13796 1616 aa19.02■□□□□ 0.64
HMGCL-204ENST00000436439 RUSC2Q8N2Y8 1516 aa18.89■□□□□ 0.62
HMGCL-204ENST00000436439 PRG4Q92954 1404 aaPredicted RBP18.86■□□□□ 0.61
HMGCL-204ENST00000436439 JPH4Q96JJ6 628 aa18.83■□□□□ 0.61
HMGCL-204ENST00000436439 CUL7Q14999 1698 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms