RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 NISCHQ9Y2I1 1504 aa27.72■■■□□ 2.03
COL28A1-203ENST00000435823 AEBP2Q6ZN18 517 aaPredicted RBP26.83■■□□□ 1.89
COL28A1-203ENST00000435823 CHIC1Q5VXU3 224 aa25.23■■□□□ 1.63
COL28A1-203ENST00000435823 CCDC180Q9P1Z9 1646 aa24.68■■□□□ 1.54
COL28A1-203ENST00000435823 ABCC9O60706 1549 aa24.14■■□□□ 1.45
COL28A1-203ENST00000435823 RB1CC1Q8TDY2 1594 aa23.24■■□□□ 1.31
COL28A1-203ENST00000435823 DCAF8L2P0C7V8 631 aa23.21■■□□□ 1.31
COL28A1-203ENST00000435823 NACADO15069 1562 aa23.2■■□□□ 1.3
COL28A1-203ENST00000435823 SENP3Q9H4L4 574 aaPredicted RBP23.18■■□□□ 1.3
COL28A1-203ENST00000435823 ZCCHC6Q5VYS8 1495 aaKnown RBP23.1■■□□□ 1.29
COL28A1-203ENST00000435823 MYO15BQ96JP2 1530 aa23.05■■□□□ 1.28
COL28A1-203ENST00000435823 DCAF1Q9Y4B6 1507 aa22.95■■□□□ 1.26
COL28A1-203ENST00000435823 PHF23Q9BUL5 403 aaPredicted RBP22.7■■□□□ 1.22
COL28A1-203ENST00000435823 UNC13AQ9UPW8 1703 aa22.68■■□□□ 1.22
COL28A1-203ENST00000435823 PABPN1Q86U42 306 aaKnown RBP eCLIP22.55■■□□□ 1.2
COL28A1-203ENST00000435823 SCRIBQ14160 1630 aa22.51■■□□□ 1.19
COL28A1-203ENST00000435823 BICRAQ9NZM4 1560 aa22.48■■□□□ 1.19
COL28A1-203ENST00000435823 SHROOM4Q9ULL8 1493 aa22.31■■□□□ 1.16
COL28A1-203ENST00000435823 DNAJC5BQ9UF47 199 aa22.1■■□□□ 1.13
COL28A1-203ENST00000435823 EIF4G1Q04637 1599 aaKnown RBP21.92■■□□□ 1.1
COL28A1-203ENST00000435823 POTEDQ86YR6 584 aa21.84■■□□□ 1.09
COL28A1-203ENST00000435823 CC2D2AQ9P2K1 1620 aa21.84■■□□□ 1.09
COL28A1-203ENST00000435823 CECR2Q9BXF3 1484 aa21.7■■□□□ 1.06
COL28A1-203ENST00000435823 FOXD1Q16676 465 aa21.64■■□□□ 1.05
COL28A1-203ENST00000435823 SMARCA4P51532 1647 aa21.53■■□□□ 1.04
COL28A1-203ENST00000435823 BAZ1AQ9NRL2 1556 aaPredicted RBP21.53■■□□□ 1.04
COL28A1-203ENST00000435823 SMARCA2P51531 1590 aa21.4■■□□□ 1.02
COL28A1-203ENST00000435823 ATAD2BQ9ULI0 1458 aa21.4■■□□□ 1.02
COL28A1-203ENST00000435823 NCAPD3P42695 1498 aa21.39■■□□□ 1.02
COL28A1-203ENST00000435823 MROH2BQ7Z745 1585 aa21.36■■□□□ 1.01
COL28A1-203ENST00000435823 PEG3Q9GZU2 1588 aa21.3■■□□□ 1
COL28A1-203ENST00000435823 HMGXB3Q12766 1538 aa21.29■■□□□ 1
COL28A1-203ENST00000435823 BAZ1BQ9UIG0 1483 aaKnown RBP21.26■□□□□ 0.99
COL28A1-203ENST00000435823 WIZO95785 1651 aa21.13■□□□□ 0.97
COL28A1-203ENST00000435823 RSF1Q96T23 1441 aaPredicted RBP21.12■□□□□ 0.97
COL28A1-203ENST00000435823 TOP2AP11388 1531 aaKnown RBP20.93■□□□□ 0.94
COL28A1-203ENST00000435823 NESP48681 1621 aa20.86■□□□□ 0.93
COL28A1-203ENST00000435823 LAMC3Q9Y6N6 1575 aa20.85■□□□□ 0.93
COL28A1-203ENST00000435823 ERCC6Q03468 1493 aa20.84■□□□□ 0.93
COL28A1-203ENST00000435823 CADPSQ9ULU8 1353 aa20.78■□□□□ 0.92
COL28A1-203ENST00000435823 MSH5O43196 834 aa20.75■□□□□ 0.91
COL28A1-203ENST00000435823 PDS5BQ9NTI5 1447 aa20.72■□□□□ 0.91
COL28A1-203ENST00000435823 CCDC88BA6NC98 1476 aa20.66■□□□□ 0.9
COL28A1-203ENST00000435823 CFTRP13569 1480 aa20.64■□□□□ 0.89
COL28A1-203ENST00000435823 KIF21AQ7Z4S6 1674 aa20.64■□□□□ 0.89
COL28A1-203ENST00000435823 CUX2O14529 1486 aa20.61■□□□□ 0.89
COL28A1-203ENST00000435823 SUPT5HO00267 1087 aaKnown RBP20.6■□□□□ 0.89
COL28A1-203ENST00000435823 THOC2Q8NI27 1593 aaKnown RBP20.56■□□□□ 0.88
COL28A1-203ENST00000435823 FANCD2Q9BXW9 1451 aa20.55■□□□□ 0.88
COL28A1-203ENST00000435823 CEP164Q9UPV0 1460 aa20.54■□□□□ 0.88
COL28A1-203ENST00000435823 PRDM2Q13029 1718 aa20.51■□□□□ 0.87
COL28A1-203ENST00000435823 MRC2Q9UBG0 1479 aa20.5■□□□□ 0.87
COL28A1-203ENST00000435823 WDR62O43379 1518 aa20.43■□□□□ 0.86
COL28A1-203ENST00000435823 URB2Q14146 1524 aaKnown RBP20.32■□□□□ 0.84
COL28A1-203ENST00000435823 ABCC8Q09428 1581 aa20.24■□□□□ 0.83
COL28A1-203ENST00000435823 TOPBP1Q92547 1522 aa20.21■□□□□ 0.83
COL28A1-203ENST00000435823 DNMBPQ6XZF7 1577 aa20.2■□□□□ 0.82
COL28A1-203ENST00000435823 IFT140Q96RY7 1462 aa20.11■□□□□ 0.81
COL28A1-203ENST00000435823 PIAS4Q8N2W9 510 aaPredicted RBP20.06■□□□□ 0.8
COL28A1-203ENST00000435823 CUX1P39880 1505 aa20.04■□□□□ 0.8
COL28A1-203ENST00000435823 POLA1P09884 1462 aaPredicted RBP20.03■□□□□ 0.8
COL28A1-203ENST00000435823 FGD5Q6ZNL6 1462 aa19.99■□□□□ 0.79
COL28A1-203ENST00000435823 TARBP1Q13395 1621 aaKnown RBP19.98■□□□□ 0.79
COL28A1-203ENST00000435823 ZNF608Q9ULD9 1512 aaPredicted RBP19.97■□□□□ 0.79
COL28A1-203ENST00000435823 SOGA1O94964 1423 aa19.96■□□□□ 0.79
COL28A1-203ENST00000435823 DNAJC5Q9H3Z4 198 aa19.95■□□□□ 0.78
COL28A1-203ENST00000435823 WRNQ14191 1432 aaPredicted RBP eCLIP19.94■□□□□ 0.78
COL28A1-203ENST00000435823 RAD54L2Q9Y4B4 1467 aa19.94■□□□□ 0.78
COL28A1-203ENST00000435823 EIF4G3O43432 1585 aaKnown RBP19.91■□□□□ 0.78
COL28A1-203ENST00000435823 TOP2BQ02880 1626 aa19.88■□□□□ 0.77
COL28A1-203ENST00000435823 BIVM-ERCC5R4GMW8 1640 aa19.88■□□□□ 0.77
COL28A1-203ENST00000435823 AQRO60306 1485 aaKnown RBP eCLIP19.87■□□□□ 0.77
COL28A1-203ENST00000435823 SYNJ1O43426 1573 aa19.87■□□□□ 0.77
COL28A1-203ENST00000435823 WDR97A6NE52 1622 aa19.86■□□□□ 0.77
COL28A1-203ENST00000435823 TDRD9Q8NDG6 1382 aaKnown RBP19.83■□□□□ 0.77
COL28A1-203ENST00000435823 ABCA10Q8WWZ4 1543 aa19.8■□□□□ 0.76
COL28A1-203ENST00000435823 OSCARQ8IYS5 282 aa19.76■□□□□ 0.75
COL28A1-203ENST00000435823 GRIN2BQ13224 1484 aa19.74■□□□□ 0.75
COL28A1-203ENST00000435823 GAPVD1Q14C86 1478 aa19.74■□□□□ 0.75
COL28A1-203ENST00000435823 ABCA5Q8WWZ7 1642 aa19.71■□□□□ 0.75
COL28A1-203ENST00000435823 SNAPC4Q5SXM2 1469 aa19.71■□□□□ 0.75
COL28A1-203ENST00000435823 PBRM1Q86U86 1689 aa19.7■□□□□ 0.74
COL28A1-203ENST00000435823 MAGI1Q96QZ7 1491 aaPredicted RBP19.69■□□□□ 0.74
COL28A1-203ENST00000435823 CHD1O14646 1710 aa19.68■□□□□ 0.74
COL28A1-203ENST00000435823 FBLN2P98095 1184 aa19.67■□□□□ 0.74
COL28A1-203ENST00000435823 CHMP7Q8WUX9 453 aaPredicted RBP19.62■□□□□ 0.73
COL28A1-203ENST00000435823 SYNJ2O15056 1496 aa19.6■□□□□ 0.73
COL28A1-203ENST00000435823 ERICH3Q5RHP9 1530 aa19.57■□□□□ 0.72
COL28A1-203ENST00000435823 ADAMTS12P58397 1594 aa19.54■□□□□ 0.72
COL28A1-203ENST00000435823 KIF27Q86VH2 1401 aa19.54■□□□□ 0.72
COL28A1-203ENST00000435823 PPP6R1Q9UPN7 881 aa19.52■□□□□ 0.72
COL28A1-203ENST00000435823 FHAD1B1AJZ9 1412 aa19.51■□□□□ 0.71
COL28A1-203ENST00000435823 TRIM41Q8WV44 630 aa19.48■□□□□ 0.71
COL28A1-203ENST00000435823 GRIN2AQ12879 1464 aa19.48■□□□□ 0.71
COL28A1-203ENST00000435823 CLASP1Q7Z460 1538 aa19.45■□□□□ 0.7
COL28A1-203ENST00000435823 ARHGEF11O15085 1522 aa19.42■□□□□ 0.7
COL28A1-203ENST00000435823 RIMBP3CA6NJZ7 1639 aa19.42■□□□□ 0.7
COL28A1-203ENST00000435823 RIMBP3BA6NNM3 1639 aa19.42■□□□□ 0.7
COL28A1-203ENST00000435823 RIMBP3Q9UFD9 1639 aa19.42■□□□□ 0.7
COL28A1-203ENST00000435823 IGF1RP08069 1367 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms