RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 NISCHQ9Y2I1 1504 aa45.1■■■■■ 4.81
SHH-203ENST00000435425 CCDC180Q9P1Z9 1646 aa40.07■■■■■ 4.01
SHH-203ENST00000435425 ABCC9O60706 1549 aa39.26■■■■□ 3.88
SHH-203ENST00000435425 DCAF8L2P0C7V8 631 aa37.87■■■■□ 3.65
SHH-203ENST00000435425 RB1CC1Q8TDY2 1594 aa37.72■■■■□ 3.63
SHH-203ENST00000435425 NACADO15069 1562 aa37.65■■■■□ 3.62
SHH-203ENST00000435425 ZCCHC6Q5VYS8 1495 aaKnown RBP37.56■■■■□ 3.6
SHH-203ENST00000435425 MYO15BQ96JP2 1530 aa37.35■■■■□ 3.57
SHH-203ENST00000435425 DCAF1Q9Y4B6 1507 aa37.24■■■■□ 3.55
SHH-203ENST00000435425 UNC13AQ9UPW8 1703 aa36.95■■■■□ 3.51
SHH-203ENST00000435425 PABPN1Q86U42 306 aaKnown RBP eCLIP36.73■■■■□ 3.47
SHH-203ENST00000435425 SCRIBQ14160 1630 aa36.67■■■■□ 3.46
SHH-203ENST00000435425 BICRAQ9NZM4 1560 aa36.57■■■■□ 3.45
SHH-203ENST00000435425 SHROOM4Q9ULL8 1493 aa36.06■■■■□ 3.36
SHH-203ENST00000435425 DNAJC5BQ9UF47 199 aa35.98■■■■□ 3.35
SHH-203ENST00000435425 EIF4G1Q04637 1599 aaKnown RBP35.61■■■■□ 3.29
SHH-203ENST00000435425 CC2D2AQ9P2K1 1620 aa35.49■■■■□ 3.27
SHH-203ENST00000435425 CECR2Q9BXF3 1484 aa35.22■■■■□ 3.23
SHH-203ENST00000435425 SMARCA4P51532 1647 aa35.02■■■■□ 3.2
SHH-203ENST00000435425 BAZ1AQ9NRL2 1556 aaPredicted RBP34.96■■■■□ 3.19
SHH-203ENST00000435425 MROH2BQ7Z745 1585 aa34.8■■■■□ 3.16
SHH-203ENST00000435425 ATAD2BQ9ULI0 1458 aa34.78■■■■□ 3.16
SHH-203ENST00000435425 SMARCA2P51531 1590 aa34.74■■■■□ 3.15
SHH-203ENST00000435425 NCAPD3P42695 1498 aa34.71■■■■□ 3.15
SHH-203ENST00000435425 PEG3Q9GZU2 1588 aa34.58■■■■□ 3.13
SHH-203ENST00000435425 HMGXB3Q12766 1538 aa34.55■■■■□ 3.12
SHH-203ENST00000435425 BAZ1BQ9UIG0 1483 aaKnown RBP34.53■■■■□ 3.12
SHH-203ENST00000435425 WIZO95785 1651 aa34.48■■■■□ 3.11
SHH-203ENST00000435425 RSF1Q96T23 1441 aaPredicted RBP34.39■■■■□ 3.1
SHH-203ENST00000435425 TOP2AP11388 1531 aaKnown RBP34.04■■■■□ 3.04
SHH-203ENST00000435425 NESP48681 1621 aa33.98■■■■□ 3.03
SHH-203ENST00000435425 LAMC3Q9Y6N6 1575 aa33.84■■■■□ 3.01
SHH-203ENST00000435425 ERCC6Q03468 1493 aa33.82■■■■□ 3.01
SHH-203ENST00000435425 CADPSQ9ULU8 1353 aa33.74■■■□□ 2.99
SHH-203ENST00000435425 SUPT5HO00267 1087 aaKnown RBP33.71■■■□□ 2.99
SHH-203ENST00000435425 CCDC88BA6NC98 1476 aa33.67■■■□□ 2.98
SHH-203ENST00000435425 KIF21AQ7Z4S6 1674 aa33.61■■■□□ 2.97
SHH-203ENST00000435425 PDS5BQ9NTI5 1447 aa33.61■■■□□ 2.97
SHH-203ENST00000435425 CFTRP13569 1480 aa33.53■■■□□ 2.96
SHH-203ENST00000435425 THOC2Q8NI27 1593 aaKnown RBP33.4■■■□□ 2.94
SHH-203ENST00000435425 FANCD2Q9BXW9 1451 aa33.39■■■□□ 2.94
SHH-203ENST00000435425 PRDM2Q13029 1718 aa33.37■■■□□ 2.93
SHH-203ENST00000435425 CUX2O14529 1486 aa33.36■■■□□ 2.93
SHH-203ENST00000435425 CEP164Q9UPV0 1460 aa33.34■■■□□ 2.93
SHH-203ENST00000435425 MRC2Q9UBG0 1479 aa33.27■■■□□ 2.92
SHH-203ENST00000435425 WDR62O43379 1518 aa33.13■■■□□ 2.89
SHH-203ENST00000435425 URB2Q14146 1524 aaKnown RBP33.06■■■□□ 2.88
SHH-203ENST00000435425 TOPBP1Q92547 1522 aa32.86■■■□□ 2.85
SHH-203ENST00000435425 ABCC8Q09428 1581 aa32.82■■■□□ 2.84
SHH-203ENST00000435425 DNMBPQ6XZF7 1577 aa32.82■■■□□ 2.84
SHH-203ENST00000435425 CUX1P39880 1505 aa32.64■■■□□ 2.82
SHH-203ENST00000435425 IFT140Q96RY7 1462 aa32.61■■■□□ 2.81
SHH-203ENST00000435425 POLA1P09884 1462 aaPredicted RBP32.57■■■□□ 2.8
SHH-203ENST00000435425 FGD5Q6ZNL6 1462 aa32.53■■■□□ 2.8
SHH-203ENST00000435425 ZNF608Q9ULD9 1512 aaPredicted RBP32.51■■■□□ 2.8
SHH-203ENST00000435425 RAD54L2Q9Y4B4 1467 aa32.49■■■□□ 2.79
SHH-203ENST00000435425 TARBP1Q13395 1621 aaKnown RBP32.49■■■□□ 2.79
SHH-203ENST00000435425 SOGA1O94964 1423 aa32.47■■■□□ 2.79
SHH-203ENST00000435425 WRNQ14191 1432 aaPredicted RBP eCLIP32.44■■■□□ 2.78
SHH-203ENST00000435425 SYNJ1O43426 1573 aa32.39■■■□□ 2.78
SHH-203ENST00000435425 EIF4G3O43432 1585 aaKnown RBP32.38■■■□□ 2.77
SHH-203ENST00000435425 BIVM-ERCC5R4GMW8 1640 aa32.37■■■□□ 2.77
SHH-203ENST00000435425 TOP2BQ02880 1626 aa32.36■■■□□ 2.77
SHH-203ENST00000435425 AQRO60306 1485 aaKnown RBP eCLIP32.35■■■□□ 2.77
SHH-203ENST00000435425 DNAJC5Q9H3Z4 198 aa32.32■■■□□ 2.76
SHH-203ENST00000435425 TDRD9Q8NDG6 1382 aaKnown RBP32.31■■■□□ 2.76
SHH-203ENST00000435425 WDR97A6NE52 1622 aa32.25■■■□□ 2.75
SHH-203ENST00000435425 ABCA10Q8WWZ4 1543 aa32.16■■■□□ 2.74
SHH-203ENST00000435425 GAPVD1Q14C86 1478 aa32.09■■■□□ 2.73
SHH-203ENST00000435425 PBRM1Q86U86 1689 aa32.07■■■□□ 2.72
SHH-203ENST00000435425 OSCARQ8IYS5 282 aa32.06■■■□□ 2.72
SHH-203ENST00000435425 GRIN2BQ13224 1484 aa32.05■■■□□ 2.72
SHH-203ENST00000435425 ABCA5Q8WWZ7 1642 aa32.05■■■□□ 2.72
SHH-203ENST00000435425 SNAPC4Q5SXM2 1469 aa32.04■■■□□ 2.72
SHH-203ENST00000435425 FBLN2P98095 1184 aa32.04■■■□□ 2.72
SHH-203ENST00000435425 CHD1O14646 1710 aa32.03■■■□□ 2.72
SHH-203ENST00000435425 MAGI1Q96QZ7 1491 aaPredicted RBP31.94■■■□□ 2.7
SHH-203ENST00000435425 CHMP7Q8WUX9 453 aaPredicted RBP31.89■■■□□ 2.7
SHH-203ENST00000435425 SYNJ2O15056 1496 aa31.84■■■□□ 2.69
SHH-203ENST00000435425 TRIM41Q8WV44 630 aa31.79■■■□□ 2.68
SHH-203ENST00000435425 ERICH3Q5RHP9 1530 aa31.78■■■□□ 2.68
SHH-203ENST00000435425 ADAMTS12P58397 1594 aa31.76■■■□□ 2.67
SHH-203ENST00000435425 KIF27Q86VH2 1401 aa31.75■■■□□ 2.67
SHH-203ENST00000435425 FHAD1B1AJZ9 1412 aa31.69■■■□□ 2.66
SHH-203ENST00000435425 GRIN2AQ12879 1464 aa31.65■■■□□ 2.66
SHH-203ENST00000435425 IGF1RP08069 1367 aa31.61■■■□□ 2.65
SHH-203ENST00000435425 CLASP1Q7Z460 1538 aa31.58■■■□□ 2.65
SHH-203ENST00000435425 RIMBP3CA6NJZ7 1639 aa31.56■■■□□ 2.64
SHH-203ENST00000435425 RIMBP3BA6NNM3 1639 aa31.56■■■□□ 2.64
SHH-203ENST00000435425 RIMBP3Q9UFD9 1639 aa31.56■■■□□ 2.64
SHH-203ENST00000435425 RUSC2Q8N2Y8 1516 aa31.55■■■□□ 2.64
SHH-203ENST00000435425 CUL7Q14999 1698 aa31.54■■■□□ 2.64
SHH-203ENST00000435425 ARHGEF11O15085 1522 aa31.52■■■□□ 2.64
SHH-203ENST00000435425 CEP170Q5SW79 1584 aa31.51■■■□□ 2.64
SHH-203ENST00000435425 NUP160Q12769 1436 aa31.47■■■□□ 2.63
SHH-203ENST00000435425 CARMIL1Q5VZK9 1371 aa31.45■■■□□ 2.63
SHH-203ENST00000435425 CHIC1Q5VXU3 224 aa31.41■■■□□ 2.62
SHH-203ENST00000435425 CYB5RLQ6IPT4 315 aa31.3■■■□□ 2.6
SHH-203ENST00000435425 ARAP1Q96P48 1450 aa31.27■■■□□ 2.6
SHH-203ENST00000435425 RAPGEF2Q9Y4G8 1499 aa31.27■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms