RNA–Protein interactions for RNA: ENST00000435083.5

CHRNA1-207, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

TSL 3

Gene CHRNA1, Length 1,596 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-207ENST00000435083 NISCHQ9Y2I1 1504 aa29.3■■■□□ 2.28
CHRNA1-207ENST00000435083 ABCC9O60706 1549 aa26.63■■□□□ 1.85
CHRNA1-207ENST00000435083 CCDC180Q9P1Z9 1646 aa26.36■■□□□ 1.81
CHRNA1-207ENST00000435083 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
CHRNA1-207ENST00000435083 DNAJC5BQ9UF47 199 aa25.16■■□□□ 1.62
CHRNA1-207ENST00000435083 NACADO15069 1562 aa24.98■■□□□ 1.59
CHRNA1-207ENST00000435083 DCAF8L2P0C7V8 631 aa24.93■■□□□ 1.58
CHRNA1-207ENST00000435083 PABPN1Q86U42 306 aaKnown RBP eCLIP24.78■■□□□ 1.56
CHRNA1-207ENST00000435083 UNC13AQ9UPW8 1703 aa24.65■■□□□ 1.54
CHRNA1-207ENST00000435083 MYO15BQ96JP2 1530 aa24.53■■□□□ 1.52
CHRNA1-207ENST00000435083 BICRAQ9NZM4 1560 aa24.48■■□□□ 1.51
CHRNA1-207ENST00000435083 ZCCHC6Q5VYS8 1495 aaKnown RBP24.22■■□□□ 1.47
CHRNA1-207ENST00000435083 DCAF1Q9Y4B6 1507 aa24.15■■□□□ 1.46
CHRNA1-207ENST00000435083 SHROOM4Q9ULL8 1493 aa24.09■■□□□ 1.45
CHRNA1-207ENST00000435083 SCRIBQ14160 1630 aa24.05■■□□□ 1.44
CHRNA1-207ENST00000435083 CC2D2AQ9P2K1 1620 aa24.02■■□□□ 1.44
CHRNA1-207ENST00000435083 CECR2Q9BXF3 1484 aa23.99■■□□□ 1.43
CHRNA1-207ENST00000435083 EIF4G1Q04637 1599 aaKnown RBP23.9■■□□□ 1.42
CHRNA1-207ENST00000435083 DNAJC5Q9H3Z4 198 aa23.25■■□□□ 1.31
CHRNA1-207ENST00000435083 NCAPD3P42695 1498 aa23.06■■□□□ 1.28
CHRNA1-207ENST00000435083 ERCC6Q03468 1493 aa23.01■■□□□ 1.27
CHRNA1-207ENST00000435083 CUX2O14529 1486 aa22.99■■□□□ 1.27
CHRNA1-207ENST00000435083 ATAD2BQ9ULI0 1458 aa22.98■■□□□ 1.27
CHRNA1-207ENST00000435083 SMARCA4P51532 1647 aa22.9■■□□□ 1.26
CHRNA1-207ENST00000435083 SMARCA2P51531 1590 aa22.9■■□□□ 1.26
CHRNA1-207ENST00000435083 HMGXB3Q12766 1538 aa22.86■■□□□ 1.25
CHRNA1-207ENST00000435083 NESP48681 1621 aa22.81■■□□□ 1.24
CHRNA1-207ENST00000435083 BAZ1AQ9NRL2 1556 aaPredicted RBP22.76■■□□□ 1.23
CHRNA1-207ENST00000435083 BAZ1BQ9UIG0 1483 aaKnown RBP22.76■■□□□ 1.23
CHRNA1-207ENST00000435083 PEG3Q9GZU2 1588 aa22.64■■□□□ 1.22
CHRNA1-207ENST00000435083 MROH2BQ7Z745 1585 aa22.59■■□□□ 1.21
CHRNA1-207ENST00000435083 LAMC3Q9Y6N6 1575 aa22.59■■□□□ 1.21
CHRNA1-207ENST00000435083 THOC2Q8NI27 1593 aaKnown RBP22.58■■□□□ 1.2
CHRNA1-207ENST00000435083 KIF21AQ7Z4S6 1674 aa22.5■■□□□ 1.19
CHRNA1-207ENST00000435083 PDS5BQ9NTI5 1447 aa22.48■■□□□ 1.19
CHRNA1-207ENST00000435083 CADPSQ9ULU8 1353 aa22.37■■□□□ 1.17
CHRNA1-207ENST00000435083 WIZO95785 1651 aa22.31■■□□□ 1.16
CHRNA1-207ENST00000435083 MRC2Q9UBG0 1479 aa22.29■■□□□ 1.16
CHRNA1-207ENST00000435083 WDR62O43379 1518 aa22.22■■□□□ 1.15
CHRNA1-207ENST00000435083 TRIM41Q8WV44 630 aa22.21■■□□□ 1.15
CHRNA1-207ENST00000435083 CEP164Q9UPV0 1460 aa22.18■■□□□ 1.14
CHRNA1-207ENST00000435083 FANCD2Q9BXW9 1451 aa22.13■■□□□ 1.13
CHRNA1-207ENST00000435083 CFTRP13569 1480 aa22.06■■□□□ 1.12
CHRNA1-207ENST00000435083 RSF1Q96T23 1441 aaPredicted RBP22.04■■□□□ 1.12
CHRNA1-207ENST00000435083 TOP2AP11388 1531 aaKnown RBP22■■□□□ 1.11
CHRNA1-207ENST00000435083 OSCARQ8IYS5 282 aa21.96■■□□□ 1.11
CHRNA1-207ENST00000435083 URB2Q14146 1524 aaKnown RBP21.96■■□□□ 1.11
CHRNA1-207ENST00000435083 PRDM2Q13029 1718 aa21.82■■□□□ 1.08
CHRNA1-207ENST00000435083 CCDC88BA6NC98 1476 aa21.77■■□□□ 1.08
CHRNA1-207ENST00000435083 IFT140Q96RY7 1462 aa21.73■■□□□ 1.07
CHRNA1-207ENST00000435083 ZNF608Q9ULD9 1512 aaPredicted RBP21.72■■□□□ 1.07
CHRNA1-207ENST00000435083 TOPBP1Q92547 1522 aa21.68■■□□□ 1.06
CHRNA1-207ENST00000435083 RIMBP3CA6NJZ7 1639 aa21.67■■□□□ 1.06
CHRNA1-207ENST00000435083 RIMBP3BA6NNM3 1639 aa21.67■■□□□ 1.06
CHRNA1-207ENST00000435083 RIMBP3Q9UFD9 1639 aa21.67■■□□□ 1.06
CHRNA1-207ENST00000435083 ABCC8Q09428 1581 aa21.61■■□□□ 1.05
CHRNA1-207ENST00000435083 EIF4G3O43432 1585 aaKnown RBP21.58■■□□□ 1.05
CHRNA1-207ENST00000435083 ARHGEF11O15085 1522 aa21.58■■□□□ 1.04
CHRNA1-207ENST00000435083 DNMBPQ6XZF7 1577 aa21.57■■□□□ 1.04
CHRNA1-207ENST00000435083 AQRO60306 1485 aaKnown RBP eCLIP21.52■■□□□ 1.04
CHRNA1-207ENST00000435083 TARBP1Q13395 1621 aaKnown RBP21.49■■□□□ 1.03
CHRNA1-207ENST00000435083 CYB5RLQ6IPT4 315 aa21.48■■□□□ 1.03
CHRNA1-207ENST00000435083 CHD1O14646 1710 aa21.47■■□□□ 1.03
CHRNA1-207ENST00000435083 FBLN2P98095 1184 aa21.47■■□□□ 1.03
CHRNA1-207ENST00000435083 POLA1P09884 1462 aaPredicted RBP21.44■■□□□ 1.02
CHRNA1-207ENST00000435083 RAD54L2Q9Y4B4 1467 aa21.39■■□□□ 1.01
CHRNA1-207ENST00000435083 SOGA1O94964 1423 aa21.37■■□□□ 1.01
CHRNA1-207ENST00000435083 TDRD9Q8NDG6 1382 aaKnown RBP21.36■■□□□ 1.01
CHRNA1-207ENST00000435083 ARAP1Q96P48 1450 aa21.34■■□□□ 1.01
CHRNA1-207ENST00000435083 TRHP20396 242 aaPredicted RBP21.34■■□□□ 1.01
CHRNA1-207ENST00000435083 FGD5Q6ZNL6 1462 aa21.29■■□□□ 1
CHRNA1-207ENST00000435083 SNAPC4Q5SXM2 1469 aa21.28■■□□□ 1
CHRNA1-207ENST00000435083 CHMP7Q8WUX9 453 aaPredicted RBP21.25■□□□□ 0.99
CHRNA1-207ENST00000435083 WDR97A6NE52 1622 aa21.23■□□□□ 0.99
CHRNA1-207ENST00000435083 CUX1P39880 1505 aa21.22■□□□□ 0.99
CHRNA1-207ENST00000435083 CLASP1Q7Z460 1538 aa21.2■□□□□ 0.98
CHRNA1-207ENST00000435083 GRIN2BQ13224 1484 aa21.19■□□□□ 0.98
CHRNA1-207ENST00000435083 MAGI1Q96QZ7 1491 aaPredicted RBP21.19■□□□□ 0.98
CHRNA1-207ENST00000435083 SYNJ1O43426 1573 aa21.19■□□□□ 0.98
CHRNA1-207ENST00000435083 SYNJ2O15056 1496 aa21.13■□□□□ 0.97
CHRNA1-207ENST00000435083 GAPVD1Q14C86 1478 aa21.09■□□□□ 0.97
CHRNA1-207ENST00000435083 PBRM1Q86U86 1689 aa21.09■□□□□ 0.97
CHRNA1-207ENST00000435083 ABCA10Q8WWZ4 1543 aa21.02■□□□□ 0.95
CHRNA1-207ENST00000435083 ABCA5Q8WWZ7 1642 aa21■□□□□ 0.95
CHRNA1-207ENST00000435083 SUPT5HO00267 1087 aaKnown RBP20.99■□□□□ 0.95
CHRNA1-207ENST00000435083 WRNQ14191 1432 aaPredicted RBP eCLIP20.91■□□□□ 0.94
CHRNA1-207ENST00000435083 GRIN2AQ12879 1464 aa20.91■□□□□ 0.94
CHRNA1-207ENST00000435083 ERCC6L2Q5T890 1561 aa20.88■□□□□ 0.93
CHRNA1-207ENST00000435083 AEBP2Q6ZN18 517 aaPredicted RBP20.88■□□□□ 0.93
CHRNA1-207ENST00000435083 ADAMTS12P58397 1594 aa20.86■□□□□ 0.93
CHRNA1-207ENST00000435083 CEP170Q5SW79 1584 aa20.85■□□□□ 0.93
CHRNA1-207ENST00000435083 NUP160Q12769 1436 aa20.83■□□□□ 0.93
CHRNA1-207ENST00000435083 BIVM-ERCC5R4GMW8 1640 aa20.83■□□□□ 0.92
CHRNA1-207ENST00000435083 TOP2BQ02880 1626 aa20.82■□□□□ 0.92
CHRNA1-207ENST00000435083 FHAD1B1AJZ9 1412 aa20.81■□□□□ 0.92
CHRNA1-207ENST00000435083 SHROOM2Q13796 1616 aa20.76■□□□□ 0.91
CHRNA1-207ENST00000435083 ERICH3Q5RHP9 1530 aa20.74■□□□□ 0.91
CHRNA1-207ENST00000435083 PRG4Q92954 1404 aaPredicted RBP20.69■□□□□ 0.9
CHRNA1-207ENST00000435083 JPH4Q96JJ6 628 aa20.67■□□□□ 0.9
CHRNA1-207ENST00000435083 KIF13AQ9H1H9 1805 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms