RNA–Protein interactions for RNA: ENST00000434435.1

SMARCAL1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

TSL 4

Gene SMARCAL1, Length 544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-208ENST00000434435 NISCHQ9Y2I1 1504 aa54.74■■■■■ 6.35
SMARCAL1-208ENST00000434435 CCDC180Q9P1Z9 1646 aa48.4■■■■■ 5.34
SMARCAL1-208ENST00000434435 ABCC9O60706 1549 aa46.31■■■■■ 5
SMARCAL1-208ENST00000434435 ZCCHC6Q5VYS8 1495 aaKnown RBP45.82■■■■■ 4.93
SMARCAL1-208ENST00000434435 DCAF1Q9Y4B6 1507 aa45.35■■■■■ 4.85
SMARCAL1-208ENST00000434435 DCAF8L2P0C7V8 631 aa45.24■■■■■ 4.83
SMARCAL1-208ENST00000434435 MYO15BQ96JP2 1530 aa45.19■■■■■ 4.82
SMARCAL1-208ENST00000434435 NACADO15069 1562 aa45.19■■■■■ 4.82
SMARCAL1-208ENST00000434435 RB1CC1Q8TDY2 1594 aa45.03■■■■■ 4.8
SMARCAL1-208ENST00000434435 SCRIBQ14160 1630 aa44.19■■■■■ 4.66
SMARCAL1-208ENST00000434435 UNC13AQ9UPW8 1703 aa44.17■■■■■ 4.66
SMARCAL1-208ENST00000434435 SHROOM4Q9ULL8 1493 aa43.76■■■■■ 4.6
SMARCAL1-208ENST00000434435 BICRAQ9NZM4 1560 aa43.61■■■■■ 4.57
SMARCAL1-208ENST00000434435 PABPN1Q86U42 306 aaKnown RBP eCLIP43.34■■■■■ 4.53
SMARCAL1-208ENST00000434435 CECR2Q9BXF3 1484 aa42.49■■■■■ 4.39
SMARCAL1-208ENST00000434435 BAZ1AQ9NRL2 1556 aaPredicted RBP42.4■■■■■ 4.38
SMARCAL1-208ENST00000434435 EIF4G1Q04637 1599 aaKnown RBP42.39■■■■■ 4.38
SMARCAL1-208ENST00000434435 SMARCA4P51532 1647 aa42.35■■■■■ 4.37
SMARCAL1-208ENST00000434435 MROH2BQ7Z745 1585 aa42.19■■■■■ 4.34
SMARCAL1-208ENST00000434435 CC2D2AQ9P2K1 1620 aa42■■■■■ 4.31
SMARCAL1-208ENST00000434435 RSF1Q96T23 1441 aaPredicted RBP42■■■■■ 4.31
SMARCAL1-208ENST00000434435 PEG3Q9GZU2 1588 aa41.89■■■■■ 4.3
SMARCAL1-208ENST00000434435 WIZO95785 1651 aa41.87■■■■■ 4.29
SMARCAL1-208ENST00000434435 SMARCA2P51531 1590 aa41.85■■■■■ 4.29
SMARCAL1-208ENST00000434435 ATAD2BQ9ULI0 1458 aa41.79■■■■■ 4.28
SMARCAL1-208ENST00000434435 SUPT5HO00267 1087 aaKnown RBP41.61■■■■■ 4.25
SMARCAL1-208ENST00000434435 NCAPD3P42695 1498 aa41.6■■■■■ 4.25
SMARCAL1-208ENST00000434435 HMGXB3Q12766 1538 aa41.58■■■■■ 4.25
SMARCAL1-208ENST00000434435 BAZ1BQ9UIG0 1483 aaKnown RBP41.53■■■■■ 4.24
SMARCAL1-208ENST00000434435 DNAJC5BQ9UF47 199 aa41.52■■■■■ 4.24
SMARCAL1-208ENST00000434435 TOP2AP11388 1531 aaKnown RBP41.46■■■■■ 4.23
SMARCAL1-208ENST00000434435 CCDC88BA6NC98 1476 aa40.89■■■■■ 4.14
SMARCAL1-208ENST00000434435 LAMC3Q9Y6N6 1575 aa40.47■■■■■ 4.07
SMARCAL1-208ENST00000434435 PRDM2Q13029 1718 aa40.46■■■■■ 4.07
SMARCAL1-208ENST00000434435 CADPSQ9ULU8 1353 aa40.42■■■■■ 4.06
SMARCAL1-208ENST00000434435 CFTRP13569 1480 aa40.41■■■■■ 4.06
SMARCAL1-208ENST00000434435 NESP48681 1621 aa40.34■■■■■ 4.05
SMARCAL1-208ENST00000434435 PDS5BQ9NTI5 1447 aa40.08■■■■■ 4.01
SMARCAL1-208ENST00000434435 KIF21AQ7Z4S6 1674 aa40.05■■■■■ 4
SMARCAL1-208ENST00000434435 FANCD2Q9BXW9 1451 aa40.01■■■■■ 4
SMARCAL1-208ENST00000434435 CEP164Q9UPV0 1460 aa39.91■■■■□ 3.98
SMARCAL1-208ENST00000434435 ERCC6Q03468 1493 aa39.88■■■■□ 3.97
SMARCAL1-208ENST00000434435 ABCC8Q09428 1581 aa39.75■■■■□ 3.95
SMARCAL1-208ENST00000434435 MRC2Q9UBG0 1479 aa39.65■■■■□ 3.94
SMARCAL1-208ENST00000434435 THOC2Q8NI27 1593 aaKnown RBP39.63■■■■□ 3.94
SMARCAL1-208ENST00000434435 WRNQ14191 1432 aaPredicted RBP eCLIP39.62■■■■□ 3.93
SMARCAL1-208ENST00000434435 DNMBPQ6XZF7 1577 aa39.58■■■■□ 3.93
SMARCAL1-208ENST00000434435 URB2Q14146 1524 aaKnown RBP39.56■■■■□ 3.92
SMARCAL1-208ENST00000434435 CUX1P39880 1505 aa39.55■■■■□ 3.92
SMARCAL1-208ENST00000434435 BIVM-ERCC5R4GMW8 1640 aa39.54■■■■□ 3.92
SMARCAL1-208ENST00000434435 SYNJ1O43426 1573 aa39.53■■■■□ 3.92
SMARCAL1-208ENST00000434435 WDR62O43379 1518 aa39.5■■■■□ 3.91
SMARCAL1-208ENST00000434435 TOP2BQ02880 1626 aa39.5■■■■□ 3.91
SMARCAL1-208ENST00000434435 TOPBP1Q92547 1522 aa39.5■■■■□ 3.91
SMARCAL1-208ENST00000434435 CHIC1Q5VXU3 224 aa39.36■■■■□ 3.89
SMARCAL1-208ENST00000434435 FGD5Q6ZNL6 1462 aa39.27■■■■□ 3.88
SMARCAL1-208ENST00000434435 TRIM41Q8WV44 630 aa39.26■■■■□ 3.88
SMARCAL1-208ENST00000434435 POLA1P09884 1462 aaPredicted RBP39.21■■■■□ 3.87
SMARCAL1-208ENST00000434435 CUX2O14529 1486 aa39.11■■■■□ 3.85
SMARCAL1-208ENST00000434435 TARBP1Q13395 1621 aaKnown RBP39.03■■■■□ 3.84
SMARCAL1-208ENST00000434435 SOGA1O94964 1423 aa39.03■■■■□ 3.84
SMARCAL1-208ENST00000434435 WDR97A6NE52 1622 aa39.03■■■■□ 3.84
SMARCAL1-208ENST00000434435 IFT140Q96RY7 1462 aa39.01■■■■□ 3.84
SMARCAL1-208ENST00000434435 RAD54L2Q9Y4B4 1467 aa39■■■■□ 3.83
SMARCAL1-208ENST00000434435 ABCA10Q8WWZ4 1543 aa38.93■■■■□ 3.82
SMARCAL1-208ENST00000434435 ABCA5Q8WWZ7 1642 aa38.76■■■■□ 3.8
SMARCAL1-208ENST00000434435 EIF4G3O43432 1585 aaKnown RBP38.74■■■■□ 3.79
SMARCAL1-208ENST00000434435 ZNF608Q9ULD9 1512 aaPredicted RBP38.73■■■■□ 3.79
SMARCAL1-208ENST00000434435 KIF27Q86VH2 1401 aa38.72■■■■□ 3.79
SMARCAL1-208ENST00000434435 PBRM1Q86U86 1689 aa38.67■■■■□ 3.78
SMARCAL1-208ENST00000434435 TDRD9Q8NDG6 1382 aaKnown RBP38.67■■■■□ 3.78
SMARCAL1-208ENST00000434435 GAPVD1Q14C86 1478 aa38.63■■■■□ 3.77
SMARCAL1-208ENST00000434435 RUSC2Q8N2Y8 1516 aa38.62■■■■□ 3.77
SMARCAL1-208ENST00000434435 EEA1Q15075 1411 aa38.62■■■■□ 3.77
SMARCAL1-208ENST00000434435 AQRO60306 1485 aaKnown RBP eCLIP38.6■■■■□ 3.77
SMARCAL1-208ENST00000434435 ERICH3Q5RHP9 1530 aa38.5■■■■□ 3.75
SMARCAL1-208ENST00000434435 GRIN2BQ13224 1484 aa38.5■■■■□ 3.75
SMARCAL1-208ENST00000434435 FAM9AQ8IZU1 332 aaPredicted RBP38.42■■■■□ 3.74
SMARCAL1-208ENST00000434435 CUL7Q14999 1698 aa38.42■■■■□ 3.74
SMARCAL1-208ENST00000434435 IGF1RP08069 1367 aa38.36■■■■□ 3.73
SMARCAL1-208ENST00000434435 SNAPC4Q5SXM2 1469 aa38.34■■■■□ 3.73
SMARCAL1-208ENST00000434435 ADAMTS12P58397 1594 aa38.33■■■■□ 3.73
SMARCAL1-208ENST00000434435 CSRNP3Q8WYN3 585 aa38.33■■■■□ 3.73
SMARCAL1-208ENST00000434435 MAGI1Q96QZ7 1491 aaPredicted RBP38.33■■■■□ 3.73
SMARCAL1-208ENST00000434435 KIF21BO75037 1637 aa38.22■■■■□ 3.71
SMARCAL1-208ENST00000434435 FHAD1B1AJZ9 1412 aa38.21■■■■□ 3.71
SMARCAL1-208ENST00000434435 CARMIL1Q5VZK9 1371 aa38.19■■■■□ 3.7
SMARCAL1-208ENST00000434435 PRXQ9BXM0 1461 aa38.19■■■■□ 3.7
SMARCAL1-208ENST00000434435 SYNJ2O15056 1496 aa38.15■■■■□ 3.7
SMARCAL1-208ENST00000434435 CHD1O14646 1710 aa38.13■■■■□ 3.69
SMARCAL1-208ENST00000434435 RAPGEF2Q9Y4G8 1499 aa38.12■■■■□ 3.69
SMARCAL1-208ENST00000434435 GRIN2AQ12879 1464 aa38.02■■■■□ 3.68
SMARCAL1-208ENST00000434435 GOLGA3Q08378 1498 aa38.01■■■■□ 3.67
SMARCAL1-208ENST00000434435 CHMP7Q8WUX9 453 aaPredicted RBP37.98■■■■□ 3.67
SMARCAL1-208ENST00000434435 FBLN2P98095 1184 aa37.94■■■■□ 3.66
SMARCAL1-208ENST00000434435 CTTNBP2Q8WZ74 1663 aa37.9■■■■□ 3.66
SMARCAL1-208ENST00000434435 EHMT2Q96KQ7 1210 aa37.85■■■■□ 3.65
SMARCAL1-208ENST00000434435 CEP170Q5SW79 1584 aa37.83■■■■□ 3.65
SMARCAL1-208ENST00000434435 NUP160Q12769 1436 aa37.78■■■■□ 3.64
SMARCAL1-208ENST00000434435 UBTFP17480 764 aaKnown RBP37.74■■■■□ 3.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms