RNA–Protein interactions for RNA: ENST00000434278.5

LMBR1-208, Transcript of limb development membrane protein 1, humanhuman

TSL 5

Gene LMBR1, Length 678 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-208ENST00000434278 NISCHQ9Y2I1 1504 aa49.87■■■■■ 5.57
LMBR1-208ENST00000434278 CCDC180Q9P1Z9 1646 aa44.49■■■■■ 4.71
LMBR1-208ENST00000434278 ABCC9O60706 1549 aa43.99■■■■■ 4.63
LMBR1-208ENST00000434278 RB1CC1Q8TDY2 1594 aa42.09■■■■■ 4.33
LMBR1-208ENST00000434278 NACADO15069 1562 aa41.93■■■■■ 4.3
LMBR1-208ENST00000434278 DCAF8L2P0C7V8 631 aa41.86■■■■■ 4.29
LMBR1-208ENST00000434278 MYO15BQ96JP2 1530 aa41.54■■■■■ 4.24
LMBR1-208ENST00000434278 ZCCHC6Q5VYS8 1495 aaKnown RBP41.45■■■■■ 4.23
LMBR1-208ENST00000434278 DCAF1Q9Y4B6 1507 aa41.21■■■■■ 4.19
LMBR1-208ENST00000434278 UNC13AQ9UPW8 1703 aa41.18■■■■■ 4.18
LMBR1-208ENST00000434278 PABPN1Q86U42 306 aaKnown RBP eCLIP41.06■■■■■ 4.16
LMBR1-208ENST00000434278 BICRAQ9NZM4 1560 aa40.89■■■■■ 4.14
LMBR1-208ENST00000434278 DNAJC5BQ9UF47 199 aa40.83■■■■■ 4.13
LMBR1-208ENST00000434278 SCRIBQ14160 1630 aa40.6■■■■■ 4.09
LMBR1-208ENST00000434278 SHROOM4Q9ULL8 1493 aa40.32■■■■■ 4.05
LMBR1-208ENST00000434278 EIF4G1Q04637 1599 aaKnown RBP39.82■■■■□ 3.97
LMBR1-208ENST00000434278 CC2D2AQ9P2K1 1620 aa39.76■■■■□ 3.96
LMBR1-208ENST00000434278 CECR2Q9BXF3 1484 aa39.56■■■■□ 3.92
LMBR1-208ENST00000434278 SMARCA4P51532 1647 aa38.78■■■■□ 3.8
LMBR1-208ENST00000434278 NCAPD3P42695 1498 aa38.73■■■■□ 3.79
LMBR1-208ENST00000434278 ATAD2BQ9ULI0 1458 aa38.69■■■■□ 3.78
LMBR1-208ENST00000434278 BAZ1AQ9NRL2 1556 aaPredicted RBP38.66■■■■□ 3.78
LMBR1-208ENST00000434278 SMARCA2P51531 1590 aa38.58■■■■□ 3.77
LMBR1-208ENST00000434278 HMGXB3Q12766 1538 aa38.47■■■■□ 3.75
LMBR1-208ENST00000434278 MROH2BQ7Z745 1585 aa38.45■■■■□ 3.75
LMBR1-208ENST00000434278 PEG3Q9GZU2 1588 aa38.4■■■■□ 3.74
LMBR1-208ENST00000434278 BAZ1BQ9UIG0 1483 aaKnown RBP38.33■■■■□ 3.73
LMBR1-208ENST00000434278 WIZO95785 1651 aa38.02■■■■□ 3.68
LMBR1-208ENST00000434278 NESP48681 1621 aa37.97■■■■□ 3.67
LMBR1-208ENST00000434278 ERCC6Q03468 1493 aa37.9■■■■□ 3.66
LMBR1-208ENST00000434278 RSF1Q96T23 1441 aaPredicted RBP37.86■■■■□ 3.65
LMBR1-208ENST00000434278 LAMC3Q9Y6N6 1575 aa37.75■■■■□ 3.63
LMBR1-208ENST00000434278 CUX2O14529 1486 aa37.65■■■■□ 3.62
LMBR1-208ENST00000434278 CADPSQ9ULU8 1353 aa37.57■■■■□ 3.61
LMBR1-208ENST00000434278 TOP2AP11388 1531 aaKnown RBP37.56■■■■□ 3.6
LMBR1-208ENST00000434278 PDS5BQ9NTI5 1447 aa37.5■■■■□ 3.59
LMBR1-208ENST00000434278 KIF21AQ7Z4S6 1674 aa37.48■■■■□ 3.59
LMBR1-208ENST00000434278 THOC2Q8NI27 1593 aaKnown RBP37.46■■■■□ 3.59
LMBR1-208ENST00000434278 CFTRP13569 1480 aa37.26■■■■□ 3.56
LMBR1-208ENST00000434278 MRC2Q9UBG0 1479 aa37.16■■■■□ 3.54
LMBR1-208ENST00000434278 CCDC88BA6NC98 1476 aa37.14■■■■□ 3.54
LMBR1-208ENST00000434278 FANCD2Q9BXW9 1451 aa37.14■■■■□ 3.54
LMBR1-208ENST00000434278 CEP164Q9UPV0 1460 aa37.12■■■■□ 3.53
LMBR1-208ENST00000434278 WDR62O43379 1518 aa37.06■■■■□ 3.52
LMBR1-208ENST00000434278 DNAJC5Q9H3Z4 198 aa37.04■■■■□ 3.52
LMBR1-208ENST00000434278 PRDM2Q13029 1718 aa36.91■■■■□ 3.5
LMBR1-208ENST00000434278 URB2Q14146 1524 aaKnown RBP36.82■■■■□ 3.48
LMBR1-208ENST00000434278 SUPT5HO00267 1087 aaKnown RBP36.59■■■■□ 3.45
LMBR1-208ENST00000434278 TOPBP1Q92547 1522 aa36.51■■■■□ 3.44
LMBR1-208ENST00000434278 ABCC8Q09428 1581 aa36.43■■■■□ 3.42
LMBR1-208ENST00000434278 DNMBPQ6XZF7 1577 aa36.41■■■■□ 3.42
LMBR1-208ENST00000434278 IFT140Q96RY7 1462 aa36.36■■■■□ 3.41
LMBR1-208ENST00000434278 ZNF608Q9ULD9 1512 aaPredicted RBP36.29■■■■□ 3.4
LMBR1-208ENST00000434278 POLA1P09884 1462 aaPredicted RBP36.18■■■■□ 3.38
LMBR1-208ENST00000434278 TARBP1Q13395 1621 aaKnown RBP36.15■■■■□ 3.38
LMBR1-208ENST00000434278 CUX1P39880 1505 aa36.09■■■■□ 3.37
LMBR1-208ENST00000434278 EIF4G3O43432 1585 aaKnown RBP36.09■■■■□ 3.37
LMBR1-208ENST00000434278 RAD54L2Q9Y4B4 1467 aa36.05■■■■□ 3.36
LMBR1-208ENST00000434278 OSCARQ8IYS5 282 aa36.04■■■■□ 3.36
LMBR1-208ENST00000434278 FGD5Q6ZNL6 1462 aa36.03■■■■□ 3.36
LMBR1-208ENST00000434278 AQRO60306 1485 aaKnown RBP eCLIP36.02■■■■□ 3.365e-8■■■■■ 27.4
LMBR1-208ENST00000434278 SOGA1O94964 1423 aa36.01■■■■□ 3.36
LMBR1-208ENST00000434278 TDRD9Q8NDG6 1382 aaKnown RBP35.89■■■■□ 3.34
LMBR1-208ENST00000434278 WDR97A6NE52 1622 aa35.78■■■■□ 3.32
LMBR1-208ENST00000434278 CHD1O14646 1710 aa35.72■■■■□ 3.31
LMBR1-208ENST00000434278 WRNQ14191 1432 aaPredicted RBP eCLIP35.68■■■■□ 3.32e-6■■■■■ 59.6
LMBR1-208ENST00000434278 SNAPC4Q5SXM2 1469 aa35.66■■■■□ 3.3
LMBR1-208ENST00000434278 FBLN2P98095 1184 aa35.65■■■■□ 3.3
LMBR1-208ENST00000434278 TRIM41Q8WV44 630 aa35.65■■■■□ 3.3
LMBR1-208ENST00000434278 TOP2BQ02880 1626 aa35.65■■■■□ 3.3
LMBR1-208ENST00000434278 BIVM-ERCC5R4GMW8 1640 aa35.65■■■■□ 3.3
LMBR1-208ENST00000434278 SYNJ1O43426 1573 aa35.64■■■■□ 3.3
LMBR1-208ENST00000434278 ABCA10Q8WWZ4 1543 aa35.64■■■■□ 3.3
LMBR1-208ENST00000434278 GRIN2BQ13224 1484 aa35.62■■■■□ 3.29
LMBR1-208ENST00000434278 GAPVD1Q14C86 1478 aa35.58■■■■□ 3.29
LMBR1-208ENST00000434278 MAGI1Q96QZ7 1491 aaPredicted RBP35.56■■■■□ 3.28
LMBR1-208ENST00000434278 ABCA5Q8WWZ7 1642 aa35.54■■■■□ 3.28
LMBR1-208ENST00000434278 PBRM1Q86U86 1689 aa35.53■■■■□ 3.28
LMBR1-208ENST00000434278 RIMBP3CA6NJZ7 1639 aa35.53■■■■□ 3.28
LMBR1-208ENST00000434278 RIMBP3BA6NNM3 1639 aa35.53■■■■□ 3.28
LMBR1-208ENST00000434278 RIMBP3Q9UFD9 1639 aa35.53■■■■□ 3.28
LMBR1-208ENST00000434278 CHMP7Q8WUX9 453 aaPredicted RBP35.48■■■■□ 3.27
LMBR1-208ENST00000434278 ARHGEF11O15085 1522 aa35.47■■■■□ 3.27
LMBR1-208ENST00000434278 SYNJ2O15056 1496 aa35.45■■■■□ 3.27
LMBR1-208ENST00000434278 CLASP1Q7Z460 1538 aa35.33■■■■□ 3.25
LMBR1-208ENST00000434278 ADAMTS12P58397 1594 aa35.24■■■■□ 3.23
LMBR1-208ENST00000434278 ERICH3Q5RHP9 1530 aa35.19■■■■□ 3.22
LMBR1-208ENST00000434278 CYB5RLQ6IPT4 315 aa35.18■■■■□ 3.22
LMBR1-208ENST00000434278 GRIN2AQ12879 1464 aa35.17■■■■□ 3.22
LMBR1-208ENST00000434278 ARAP1Q96P48 1450 aa35.17■■■■□ 3.22
LMBR1-208ENST00000434278 FHAD1B1AJZ9 1412 aa35.15■■■■□ 3.22
LMBR1-208ENST00000434278 NUP160Q12769 1436 aa35.05■■■■□ 3.2
LMBR1-208ENST00000434278 CEP170Q5SW79 1584 aa35.04■■■■□ 3.2
LMBR1-208ENST00000434278 KIF27Q86VH2 1401 aa34.95■■■■□ 3.19
LMBR1-208ENST00000434278 IGF1RP08069 1367 aa34.9■■■■□ 3.18
LMBR1-208ENST00000434278 ERCC6L2Q5T890 1561 aa34.85■■■■□ 3.17
LMBR1-208ENST00000434278 SHROOM2Q13796 1616 aa34.83■■■■□ 3.17
LMBR1-208ENST00000434278 CUL7Q14999 1698 aa34.78■■■■□ 3.16
LMBR1-208ENST00000434278 RUSC2Q8N2Y8 1516 aa34.72■■■■□ 3.15
LMBR1-208ENST00000434278 JPH4Q96JJ6 628 aa34.69■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms