RNA–Protein interactions for RNA: ENST00000434274.2

LIMS1-209, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 3

Gene LIMS1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-209ENST00000434274 NISCHQ9Y2I1 1504 aa36.62■■■■□ 3.45
LIMS1-209ENST00000434274 CCDC180Q9P1Z9 1646 aa32.88■■■□□ 2.85
LIMS1-209ENST00000434274 ABCC9O60706 1549 aa32.2■■■□□ 2.74
LIMS1-209ENST00000434274 RB1CC1Q8TDY2 1594 aa31.05■■■□□ 2.56
LIMS1-209ENST00000434274 NACADO15069 1562 aa30.94■■■□□ 2.54
LIMS1-209ENST00000434274 MYO15BQ96JP2 1530 aa30.72■■■□□ 2.51
LIMS1-209ENST00000434274 DCAF8L2P0C7V8 631 aa30.51■■■□□ 2.47
LIMS1-209ENST00000434274 ZCCHC6Q5VYS8 1495 aaKnown RBP30.47■■■□□ 2.47
LIMS1-209ENST00000434274 DCAF1Q9Y4B6 1507 aa30.43■■■□□ 2.46
LIMS1-209ENST00000434274 UNC13AQ9UPW8 1703 aa30.22■■■□□ 2.43
LIMS1-209ENST00000434274 BICRAQ9NZM4 1560 aa29.95■■■□□ 2.39
LIMS1-209ENST00000434274 SHROOM4Q9ULL8 1493 aa29.93■■■□□ 2.38
LIMS1-209ENST00000434274 PABPN1Q86U42 306 aaKnown RBP eCLIP29.9■■■□□ 2.38
LIMS1-209ENST00000434274 SCRIBQ14160 1630 aa29.76■■■□□ 2.35
LIMS1-209ENST00000434274 DNAJC5BQ9UF47 199 aa29.64■■■□□ 2.34
LIMS1-209ENST00000434274 EIF4G1Q04637 1599 aaKnown RBP29.26■■■□□ 2.27
LIMS1-209ENST00000434274 CC2D2AQ9P2K1 1620 aa29.19■■■□□ 2.26
LIMS1-209ENST00000434274 CECR2Q9BXF3 1484 aa29.04■■■□□ 2.24
LIMS1-209ENST00000434274 SMARCA4P51532 1647 aa28.51■■■□□ 2.15
LIMS1-209ENST00000434274 BAZ1AQ9NRL2 1556 aaPredicted RBP28.5■■■□□ 2.15
LIMS1-209ENST00000434274 SMARCA2P51531 1590 aa28.48■■■□□ 2.15
LIMS1-209ENST00000434274 NCAPD3P42695 1498 aa28.47■■■□□ 2.15
LIMS1-209ENST00000434274 HMGXB3Q12766 1538 aa28.39■■■□□ 2.14
LIMS1-209ENST00000434274 ATAD2BQ9ULI0 1458 aa28.39■■■□□ 2.13
LIMS1-209ENST00000434274 PEG3Q9GZU2 1588 aa28.31■■■□□ 2.12
LIMS1-209ENST00000434274 BAZ1BQ9UIG0 1483 aaKnown RBP28.19■■■□□ 2.1
LIMS1-209ENST00000434274 MROH2BQ7Z745 1585 aa28.12■■■□□ 2.09
LIMS1-209ENST00000434274 ERCC6Q03468 1493 aa27.9■■■□□ 2.06
LIMS1-209ENST00000434274 LAMC3Q9Y6N6 1575 aa27.85■■■□□ 2.05
LIMS1-209ENST00000434274 WIZO95785 1651 aa27.81■■■□□ 2.04
LIMS1-209ENST00000434274 CUX2O14529 1486 aa27.81■■■□□ 2.04
LIMS1-209ENST00000434274 NESP48681 1621 aa27.71■■■□□ 2.03
LIMS1-209ENST00000434274 RSF1Q96T23 1441 aaPredicted RBP27.7■■■□□ 2.03
LIMS1-209ENST00000434274 PDS5BQ9NTI5 1447 aa27.65■■■□□ 2.02
LIMS1-209ENST00000434274 TOP2AP11388 1531 aaKnown RBP27.63■■■□□ 2.01
LIMS1-209ENST00000434274 CADPSQ9ULU8 1353 aa27.6■■■□□ 2.01
LIMS1-209ENST00000434274 THOC2Q8NI27 1593 aaKnown RBP27.53■■■□□ 2
LIMS1-209ENST00000434274 KIF21AQ7Z4S6 1674 aa27.5■■□□□ 1.99
LIMS1-209ENST00000434274 CFTRP13569 1480 aa27.38■■□□□ 1.97
LIMS1-209ENST00000434274 MRC2Q9UBG0 1479 aa27.35■■□□□ 1.97
LIMS1-209ENST00000434274 CEP164Q9UPV0 1460 aa27.33■■□□□ 1.97
LIMS1-209ENST00000434274 PRDM2Q13029 1718 aa27.29■■□□□ 1.96
LIMS1-209ENST00000434274 WDR62O43379 1518 aa27.28■■□□□ 1.96
LIMS1-209ENST00000434274 FANCD2Q9BXW9 1451 aa27.28■■□□□ 1.96
LIMS1-209ENST00000434274 CCDC88BA6NC98 1476 aa27.18■■□□□ 1.94
LIMS1-209ENST00000434274 DNAJC5Q9H3Z4 198 aa27.15■■□□□ 1.94
LIMS1-209ENST00000434274 URB2Q14146 1524 aaKnown RBP26.97■■□□□ 1.91
LIMS1-209ENST00000434274 ABCC8Q09428 1581 aa26.94■■□□□ 1.9
LIMS1-209ENST00000434274 DNMBPQ6XZF7 1577 aa26.81■■□□□ 1.88
LIMS1-209ENST00000434274 TOPBP1Q92547 1522 aa26.8■■□□□ 1.88
LIMS1-209ENST00000434274 IFT140Q96RY7 1462 aa26.78■■□□□ 1.88
LIMS1-209ENST00000434274 SUPT5HO00267 1087 aaKnown RBP26.63■■□□□ 1.85
LIMS1-209ENST00000434274 POLA1P09884 1462 aaPredicted RBP26.55■■□□□ 1.84
LIMS1-209ENST00000434274 EIF4G3O43432 1585 aaKnown RBP26.54■■□□□ 1.84
LIMS1-209ENST00000434274 WDR97A6NE52 1622 aa26.54■■□□□ 1.84
LIMS1-209ENST00000434274 TARBP1Q13395 1621 aaKnown RBP26.54■■□□□ 1.84
LIMS1-209ENST00000434274 ZNF608Q9ULD9 1512 aaPredicted RBP26.52■■□□□ 1.84
LIMS1-209ENST00000434274 OSCARQ8IYS5 282 aa26.46■■□□□ 1.83
LIMS1-209ENST00000434274 CUX1P39880 1505 aa26.44■■□□□ 1.82
LIMS1-209ENST00000434274 FGD5Q6ZNL6 1462 aa26.42■■□□□ 1.82
LIMS1-209ENST00000434274 SOGA1O94964 1423 aa26.41■■□□□ 1.82
LIMS1-209ENST00000434274 AQRO60306 1485 aaKnown RBP eCLIP26.32■■□□□ 1.8
LIMS1-209ENST00000434274 RAD54L2Q9Y4B4 1467 aa26.32■■□□□ 1.8
LIMS1-209ENST00000434274 CHD1O14646 1710 aa26.24■■□□□ 1.79
LIMS1-209ENST00000434274 MAGI1Q96QZ7 1491 aaPredicted RBP26.23■■□□□ 1.79
LIMS1-209ENST00000434274 BIVM-ERCC5R4GMW8 1640 aa26.23■■□□□ 1.79
LIMS1-209ENST00000434274 ABCA10Q8WWZ4 1543 aa26.23■■□□□ 1.79
LIMS1-209ENST00000434274 GRIN2BQ13224 1484 aa26.23■■□□□ 1.79
LIMS1-209ENST00000434274 TDRD9Q8NDG6 1382 aaKnown RBP26.22■■□□□ 1.79
LIMS1-209ENST00000434274 TOP2BQ02880 1626 aa26.22■■□□□ 1.79
LIMS1-209ENST00000434274 WRNQ14191 1432 aaPredicted RBP eCLIP26.21■■□□□ 1.79
LIMS1-209ENST00000434274 SNAPC4Q5SXM2 1469 aa26.17■■□□□ 1.78
LIMS1-209ENST00000434274 PBRM1Q86U86 1689 aa26.15■■□□□ 1.78
LIMS1-209ENST00000434274 ABCA5Q8WWZ7 1642 aa26.14■■□□□ 1.78
LIMS1-209ENST00000434274 GAPVD1Q14C86 1478 aa26.14■■□□□ 1.78
LIMS1-209ENST00000434274 SYNJ2O15056 1496 aa26.1■■□□□ 1.77
LIMS1-209ENST00000434274 SYNJ1O43426 1573 aa26.09■■□□□ 1.77
LIMS1-209ENST00000434274 RIMBP3CA6NJZ7 1639 aa26.08■■□□□ 1.77
LIMS1-209ENST00000434274 RIMBP3BA6NNM3 1639 aa26.08■■□□□ 1.77
LIMS1-209ENST00000434274 RIMBP3Q9UFD9 1639 aa26.08■■□□□ 1.77
LIMS1-209ENST00000434274 FBLN2P98095 1184 aa26.07■■□□□ 1.76
LIMS1-209ENST00000434274 ARHGEF11O15085 1522 aa26.06■■□□□ 1.76
LIMS1-209ENST00000434274 CHMP7Q8WUX9 453 aaPredicted RBP26.02■■□□□ 1.76
LIMS1-209ENST00000434274 TRIM41Q8WV44 630 aa26.02■■□□□ 1.76
LIMS1-209ENST00000434274 CLASP1Q7Z460 1538 aa25.98■■□□□ 1.75
LIMS1-209ENST00000434274 ERICH3Q5RHP9 1530 aa25.95■■□□□ 1.74
LIMS1-209ENST00000434274 ADAMTS12P58397 1594 aa25.93■■□□□ 1.74
LIMS1-209ENST00000434274 FHAD1B1AJZ9 1412 aa25.86■■□□□ 1.73
LIMS1-209ENST00000434274 GRIN2AQ12879 1464 aa25.85■■□□□ 1.73
LIMS1-209ENST00000434274 ARAP1Q96P48 1450 aa25.79■■□□□ 1.72
LIMS1-209ENST00000434274 NUP160Q12769 1436 aa25.76■■□□□ 1.71
LIMS1-209ENST00000434274 KIF27Q86VH2 1401 aa25.72■■□□□ 1.71
LIMS1-209ENST00000434274 CYB5RLQ6IPT4 315 aa25.7■■□□□ 1.7
LIMS1-209ENST00000434274 CEP170Q5SW79 1584 aa25.69■■□□□ 1.7
LIMS1-209ENST00000434274 CUL7Q14999 1698 aa25.69■■□□□ 1.7
LIMS1-209ENST00000434274 SHROOM2Q13796 1616 aa25.64■■□□□ 1.7
LIMS1-209ENST00000434274 RUSC2Q8N2Y8 1516 aa25.55■■□□□ 1.68
LIMS1-209ENST00000434274 IGF1RP08069 1367 aa25.54■■□□□ 1.68
LIMS1-209ENST00000434274 KIAA0586Q9BVV6 1533 aa25.45■■□□□ 1.66
LIMS1-209ENST00000434274 PRG4Q92954 1404 aaPredicted RBP25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms