RNA–Protein interactions for RNA: ENST00000432796.2

HOXD3-203, Transcript of homeobox D3, humanhuman

TSL 3

Gene HOXD3, Length 428 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-203ENST00000432796 NISCHQ9Y2I1 1504 aa26.34■■□□□ 1.81
HOXD3-203ENST00000432796 ABCC9O60706 1549 aa24.74■■□□□ 1.55
HOXD3-203ENST00000432796 CCDC180Q9P1Z9 1646 aa23.93■■□□□ 1.42
HOXD3-203ENST00000432796 DNAJC5BQ9UF47 199 aa23.91■■□□□ 1.42
HOXD3-203ENST00000432796 RB1CC1Q8TDY2 1594 aa23.19■■□□□ 1.3
HOXD3-203ENST00000432796 PABPN1Q86U42 306 aaKnown RBP eCLIP22.91■■□□□ 1.26
HOXD3-203ENST00000432796 NACADO15069 1562 aa22.86■■□□□ 1.25
HOXD3-203ENST00000432796 DNAJC5Q9H3Z4 198 aa22.56■■□□□ 1.2
HOXD3-203ENST00000432796 DCAF8L2P0C7V8 631 aa22.54■■□□□ 1.2
HOXD3-203ENST00000432796 BICRAQ9NZM4 1560 aa22.54■■□□□ 1.2
HOXD3-203ENST00000432796 UNC13AQ9UPW8 1703 aa22.53■■□□□ 1.2
HOXD3-203ENST00000432796 CECR2Q9BXF3 1484 aa22.39■■□□□ 1.17
HOXD3-203ENST00000432796 MYO15BQ96JP2 1530 aa22.33■■□□□ 1.17
HOXD3-203ENST00000432796 CC2D2AQ9P2K1 1620 aa22.28■■□□□ 1.16
HOXD3-203ENST00000432796 SHROOM4Q9ULL8 1493 aa22.24■■□□□ 1.15
HOXD3-203ENST00000432796 EIF4G1Q04637 1599 aaKnown RBP22.07■■□□□ 1.12
HOXD3-203ENST00000432796 SCRIBQ14160 1630 aa21.76■■□□□ 1.07
HOXD3-203ENST00000432796 DCAF1Q9Y4B6 1507 aa21.74■■□□□ 1.07
HOXD3-203ENST00000432796 CUX2O14529 1486 aa21.69■■□□□ 1.06
HOXD3-203ENST00000432796 ZCCHC6Q5VYS8 1495 aaKnown RBP21.68■■□□□ 1.06
HOXD3-203ENST00000432796 ERCC6Q03468 1493 aa21.43■■□□□ 1.02
HOXD3-203ENST00000432796 TRIM41Q8WV44 630 aa21.21■□□□□ 0.99
HOXD3-203ENST00000432796 NCAPD3P42695 1498 aa21.15■□□□□ 0.98
HOXD3-203ENST00000432796 NESP48681 1621 aa21.01■□□□□ 0.95
HOXD3-203ENST00000432796 ATAD2BQ9ULI0 1458 aa20.96■□□□□ 0.95
HOXD3-203ENST00000432796 THOC2Q8NI27 1593 aaKnown RBP20.96■□□□□ 0.95
HOXD3-203ENST00000432796 HMGXB3Q12766 1538 aa20.9■□□□□ 0.94
HOXD3-203ENST00000432796 SMARCA2P51531 1590 aa20.84■□□□□ 0.93
HOXD3-203ENST00000432796 LAMC3Q9Y6N6 1575 aa20.76■□□□□ 0.91
HOXD3-203ENST00000432796 BAZ1BQ9UIG0 1483 aaKnown RBP20.7■□□□□ 0.9
HOXD3-203ENST00000432796 PDS5BQ9NTI5 1447 aa20.7■□□□□ 0.9
HOXD3-203ENST00000432796 SMARCA4P51532 1647 aa20.69■□□□□ 0.9
HOXD3-203ENST00000432796 KIF21AQ7Z4S6 1674 aa20.64■□□□□ 0.89
HOXD3-203ENST00000432796 BAZ1AQ9NRL2 1556 aaPredicted RBP20.56■□□□□ 0.88
HOXD3-203ENST00000432796 MRC2Q9UBG0 1479 aa20.56■□□□□ 0.88
HOXD3-203ENST00000432796 OSCARQ8IYS5 282 aa20.55■□□□□ 0.88
HOXD3-203ENST00000432796 PEG3Q9GZU2 1588 aa20.54■□□□□ 0.88
HOXD3-203ENST00000432796 WDR62O43379 1518 aa20.53■□□□□ 0.88
HOXD3-203ENST00000432796 CADPSQ9ULU8 1353 aa20.46■□□□□ 0.87
HOXD3-203ENST00000432796 CEP164Q9UPV0 1460 aa20.31■□□□□ 0.84
HOXD3-203ENST00000432796 RIMBP3CA6NJZ7 1639 aa20.31■□□□□ 0.84
HOXD3-203ENST00000432796 RIMBP3BA6NNM3 1639 aa20.31■□□□□ 0.84
HOXD3-203ENST00000432796 RIMBP3Q9UFD9 1639 aa20.31■□□□□ 0.84
HOXD3-203ENST00000432796 MROH2BQ7Z745 1585 aa20.27■□□□□ 0.84
HOXD3-203ENST00000432796 FANCD2Q9BXW9 1451 aa20.22■□□□□ 0.83
HOXD3-203ENST00000432796 ARHGEF11O15085 1522 aa20.22■□□□□ 0.83
HOXD3-203ENST00000432796 TRHP20396 242 aaPredicted RBP20.13■□□□□ 0.81
HOXD3-203ENST00000432796 AEBP2Q6ZN18 517 aaPredicted RBP20.13■□□□□ 0.81
HOXD3-203ENST00000432796 CYB5RLQ6IPT4 315 aa20.11■□□□□ 0.81
HOXD3-203ENST00000432796 URB2Q14146 1524 aaKnown RBP20.08■□□□□ 0.81
HOXD3-203ENST00000432796 CFTRP13569 1480 aa20.06■□□□□ 0.8
HOXD3-203ENST00000432796 ARAP1Q96P48 1450 aa19.97■□□□□ 0.79
HOXD3-203ENST00000432796 ZNF608Q9ULD9 1512 aaPredicted RBP19.97■□□□□ 0.79
HOXD3-203ENST00000432796 IFT140Q96RY7 1462 aa19.94■□□□□ 0.78
HOXD3-203ENST00000432796 WIZO95785 1651 aa19.94■□□□□ 0.78
HOXD3-203ENST00000432796 RSF1Q96T23 1441 aaPredicted RBP19.87■□□□□ 0.77
HOXD3-203ENST00000432796 EIF4G3O43432 1585 aaKnown RBP19.79■□□□□ 0.76
HOXD3-203ENST00000432796 TOPBP1Q92547 1522 aa19.73■□□□□ 0.75
HOXD3-203ENST00000432796 CHD1O14646 1710 aa19.72■□□□□ 0.75
HOXD3-203ENST00000432796 FBLN2P98095 1184 aa19.7■□□□□ 0.74
HOXD3-203ENST00000432796 TOP2AP11388 1531 aaKnown RBP19.7■□□□□ 0.74
HOXD3-203ENST00000432796 AQRO60306 1485 aaKnown RBP eCLIP19.69■□□□□ 0.74
HOXD3-203ENST00000432796 ABCC8Q09428 1581 aa19.66■□□□□ 0.74
HOXD3-203ENST00000432796 PRDM2Q13029 1718 aa19.63■□□□□ 0.73
HOXD3-203ENST00000432796 TARBP1Q13395 1621 aaKnown RBP19.59■□□□□ 0.73
HOXD3-203ENST00000432796 DNMBPQ6XZF7 1577 aa19.58■□□□□ 0.73
HOXD3-203ENST00000432796 CLASP1Q7Z460 1538 aa19.58■□□□□ 0.73
HOXD3-203ENST00000432796 POLA1P09884 1462 aaPredicted RBP19.49■□□□□ 0.71
HOXD3-203ENST00000432796 SYNJ1O43426 1573 aa19.48■□□□□ 0.71
HOXD3-203ENST00000432796 CCDC88BA6NC98 1476 aa19.48■□□□□ 0.71
HOXD3-203ENST00000432796 SNAPC4Q5SXM2 1469 aa19.47■□□□□ 0.71
HOXD3-203ENST00000432796 CHMP7Q8WUX9 453 aaPredicted RBP19.45■□□□□ 0.7
HOXD3-203ENST00000432796 GAPVD1Q14C86 1478 aa19.45■□□□□ 0.7
HOXD3-203ENST00000432796 TDRD9Q8NDG6 1382 aaKnown RBP19.44■□□□□ 0.7
HOXD3-203ENST00000432796 RAD54L2Q9Y4B4 1467 aa19.41■□□□□ 0.7
HOXD3-203ENST00000432796 MAGI1Q96QZ7 1491 aaPredicted RBP19.41■□□□□ 0.7
HOXD3-203ENST00000432796 SOGA1O94964 1423 aa19.39■□□□□ 0.69
HOXD3-203ENST00000432796 ILDR1Q86SU0 546 aaPredicted RBP19.38■□□□□ 0.69
HOXD3-203ENST00000432796 WDR97A6NE52 1622 aa19.37■□□□□ 0.69
HOXD3-203ENST00000432796 SYNJ2O15056 1496 aa19.35■□□□□ 0.69
HOXD3-203ENST00000432796 GRIN2BQ13224 1484 aa19.32■□□□□ 0.68
HOXD3-203ENST00000432796 FGD5Q6ZNL6 1462 aa19.24■□□□□ 0.67
HOXD3-203ENST00000432796 ERCC6L2Q5T890 1561 aa19.19■□□□□ 0.66
HOXD3-203ENST00000432796 KDM4FA0A1W2PPD8 638 aa19.16■□□□□ 0.66
HOXD3-203ENST00000432796 KIF13AQ9H1H9 1805 aa19.11■□□□□ 0.65
HOXD3-203ENST00000432796 CEP170Q5SW79 1584 aa19.09■□□□□ 0.65
HOXD3-203ENST00000432796 CUX1P39880 1505 aa19.09■□□□□ 0.65
HOXD3-203ENST00000432796 PBRM1Q86U86 1689 aa19.08■□□□□ 0.64
HOXD3-203ENST00000432796 GRIN2AQ12879 1464 aa19.07■□□□□ 0.64
HOXD3-203ENST00000432796 NUP160Q12769 1436 aa19.05■□□□□ 0.64
HOXD3-203ENST00000432796 FAM69CQ0P6D2 419 aa19.04■□□□□ 0.64
HOXD3-203ENST00000432796 ABCC10Q5T3U5 1492 aa19.03■□□□□ 0.64
HOXD3-203ENST00000432796 ABCA10Q8WWZ4 1543 aa19■□□□□ 0.63
HOXD3-203ENST00000432796 ABCA5Q8WWZ7 1642 aa19■□□□□ 0.63
HOXD3-203ENST00000432796 SHROOM2Q13796 1616 aa19■□□□□ 0.63
HOXD3-203ENST00000432796 KDM6BO15054 1643 aa18.96■□□□□ 0.63
HOXD3-203ENST00000432796 MAPKBP1O60336 1514 aa18.94■□□□□ 0.62
HOXD3-203ENST00000432796 ADAMTS12P58397 1594 aa18.93■□□□□ 0.62
HOXD3-203ENST00000432796 DIP2BQ9P265 1576 aa18.93■□□□□ 0.62
HOXD3-203ENST00000432796 PRG4Q92954 1404 aaPredicted RBP18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms