RNA–Protein interactions for RNA: ENST00000431737.1

LINC00840-201, long intergenic non-protein coding RNA 840, humanhuman

TSL 2 BASIC

Gene LINC00840, Length 1,974 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00840-201ENST00000431737 NISCHQ9Y2I1 1504 aa28.07■■■□□ 2.08
LINC00840-201ENST00000431737 CCDC180Q9P1Z9 1646 aa24.42■■□□□ 1.5
LINC00840-201ENST00000431737 ZCCHC6Q5VYS8 1495 aaKnown RBP23.69■■□□□ 1.38
LINC00840-201ENST00000431737 DCAF1Q9Y4B6 1507 aa23.3■■□□□ 1.32
LINC00840-201ENST00000431737 SHROOM4Q9ULL8 1493 aa22.95■■□□□ 1.26
LINC00840-201ENST00000431737 MYO15BQ96JP2 1530 aa22.9■■□□□ 1.26
LINC00840-201ENST00000431737 DCAF8L2P0C7V8 631 aa22.75■■□□□ 1.23
LINC00840-201ENST00000431737 NACADO15069 1562 aa22.58■■□□□ 1.21
LINC00840-201ENST00000431737 ABCC9O60706 1549 aa22.54■■□□□ 1.2
LINC00840-201ENST00000431737 SCRIBQ14160 1630 aa22.37■■□□□ 1.17
LINC00840-201ENST00000431737 RB1CC1Q8TDY2 1594 aa22.28■■□□□ 1.16
LINC00840-201ENST00000431737 SUPT5HO00267 1087 aaKnown RBP22.23■■□□□ 1.15
LINC00840-201ENST00000431737 UNC13AQ9UPW8 1703 aa21.94■■□□□ 1.1
LINC00840-201ENST00000431737 RSF1Q96T23 1441 aaPredicted RBP21.87■■□□□ 1.09
LINC00840-201ENST00000431737 CECR2Q9BXF3 1484 aa21.72■■□□□ 1.07
LINC00840-201ENST00000431737 MROH2BQ7Z745 1585 aa21.67■■□□□ 1.06
LINC00840-201ENST00000431737 BAZ1AQ9NRL2 1556 aaPredicted RBP21.66■■□□□ 1.06
LINC00840-201ENST00000431737 BICRAQ9NZM4 1560 aa21.64■■□□□ 1.05
LINC00840-201ENST00000431737 CHIC1Q5VXU3 224 aa21.57■■□□□ 1.04
LINC00840-201ENST00000431737 WIZO95785 1651 aa21.53■■□□□ 1.04
LINC00840-201ENST00000431737 SMARCA4P51532 1647 aa21.53■■□□□ 1.04
LINC00840-201ENST00000431737 TOP2AP11388 1531 aaKnown RBP21.36■■□□□ 1.01
LINC00840-201ENST00000431737 PEG3Q9GZU2 1588 aa21.31■■□□□ 1
LINC00840-201ENST00000431737 PABPN1Q86U42 306 aaKnown RBP eCLIP21.25■□□□□ 0.99
LINC00840-201ENST00000431737 EIF4G1Q04637 1599 aaKnown RBP21.23■□□□□ 0.99
LINC00840-201ENST00000431737 SMARCA2P51531 1590 aa21.17■□□□□ 0.98
LINC00840-201ENST00000431737 CCDC88BA6NC98 1476 aa21.07■□□□□ 0.96
LINC00840-201ENST00000431737 ATAD2BQ9ULI0 1458 aa21.03■□□□□ 0.96
LINC00840-201ENST00000431737 TRIM41Q8WV44 630 aa20.92■□□□□ 0.94
LINC00840-201ENST00000431737 BAZ1BQ9UIG0 1483 aaKnown RBP20.92■□□□□ 0.94
LINC00840-201ENST00000431737 HMGXB3Q12766 1538 aa20.87■□□□□ 0.93
LINC00840-201ENST00000431737 NCAPD3P42695 1498 aa20.8■□□□□ 0.92
LINC00840-201ENST00000431737 ABCC8Q09428 1581 aa20.74■□□□□ 0.91
LINC00840-201ENST00000431737 LOC105371045A0A1W2PR82 267 aa20.67■□□□□ 0.9
LINC00840-201ENST00000431737 WRNQ14191 1432 aaPredicted RBP eCLIP20.56■□□□□ 0.88
LINC00840-201ENST00000431737 SYNJ1O43426 1573 aa20.53■□□□□ 0.88
LINC00840-201ENST00000431737 EEA1Q15075 1411 aa20.52■□□□□ 0.87
LINC00840-201ENST00000431737 PRDM2Q13029 1718 aa20.51■□□□□ 0.87
LINC00840-201ENST00000431737 CC2D2AQ9P2K1 1620 aa20.5■□□□□ 0.87
LINC00840-201ENST00000431737 FAM9AQ8IZU1 332 aaPredicted RBP20.47■□□□□ 0.87
LINC00840-201ENST00000431737 BIVM-ERCC5R4GMW8 1640 aa20.45■□□□□ 0.86
LINC00840-201ENST00000431737 CFTRP13569 1480 aa20.45■□□□□ 0.86
LINC00840-201ENST00000431737 TOP2BQ02880 1626 aa20.44■□□□□ 0.86
LINC00840-201ENST00000431737 SOGA1O94964 1423 aa20.4■□□□□ 0.86
LINC00840-201ENST00000431737 RUSC2Q8N2Y8 1516 aa20.3■□□□□ 0.84
LINC00840-201ENST00000431737 KIF21BO75037 1637 aa20.29■□□□□ 0.84
LINC00840-201ENST00000431737 CUX1P39880 1505 aa20.26■□□□□ 0.83
LINC00840-201ENST00000431737 CADPSQ9ULU8 1353 aa20.25■□□□□ 0.83
LINC00840-201ENST00000431737 CSRNP3Q8WYN3 585 aa20.24■□□□□ 0.83
LINC00840-201ENST00000431737 GOLGA3Q08378 1498 aa20.22■□□□□ 0.83
LINC00840-201ENST00000431737 TNIKQ9UKE5 1360 aa20.21■□□□□ 0.83
LINC00840-201ENST00000431737 CEP164Q9UPV0 1460 aa20.19■□□□□ 0.82
LINC00840-201ENST00000431737 CEP162Q5TB80 1403 aa20.12■□□□□ 0.81
LINC00840-201ENST00000431737 PCGF6Q9BYE7 350 aa20.1■□□□□ 0.81
LINC00840-201ENST00000431737 EHMT2Q96KQ7 1210 aa20.09■□□□□ 0.81
LINC00840-201ENST00000431737 TRIM26Q12899 539 aaPredicted RBP20.08■□□□□ 0.81
LINC00840-201ENST00000431737 ERICH3Q5RHP9 1530 aa20.07■□□□□ 0.8
LINC00840-201ENST00000431737 LAMC3Q9Y6N6 1575 aa20.07■□□□□ 0.8
LINC00840-201ENST00000431737 FANCD2Q9BXW9 1451 aa20.04■□□□□ 0.8
LINC00840-201ENST00000431737 PRXQ9BXM0 1461 aa20.02■□□□□ 0.79
LINC00840-201ENST00000431737 KIF27Q86VH2 1401 aa20■□□□□ 0.79
LINC00840-201ENST00000431737 DNMBPQ6XZF7 1577 aa19.99■□□□□ 0.79
LINC00840-201ENST00000431737 RAPGEF2Q9Y4G8 1499 aa19.99■□□□□ 0.79
LINC00840-201ENST00000431737 FGD5Q6ZNL6 1462 aa19.95■□□□□ 0.78
LINC00840-201ENST00000431737 UBTFP17480 764 aaKnown RBP19.94■□□□□ 0.78
LINC00840-201ENST00000431737 NESP48681 1621 aa19.94■□□□□ 0.78
LINC00840-201ENST00000431737 HRCP23327 699 aa19.92■□□□□ 0.78
LINC00840-201ENST00000431737 TOPBP1Q92547 1522 aa19.89■□□□□ 0.77
LINC00840-201ENST00000431737 CLIP1P30622 1438 aa19.87■□□□□ 0.77
LINC00840-201ENST00000431737 CUX2O14529 1486 aa19.86■□□□□ 0.77
LINC00840-201ENST00000431737 WDR97A6NE52 1622 aa19.83■□□□□ 0.76
LINC00840-201ENST00000431737 ABCA10Q8WWZ4 1543 aa19.82■□□□□ 0.76
LINC00840-201ENST00000431737 PDS5BQ9NTI5 1447 aa19.82■□□□□ 0.76
LINC00840-201ENST00000431737 POLA1P09884 1462 aaPredicted RBP19.82■□□□□ 0.76
LINC00840-201ENST00000431737 KIF21AQ7Z4S6 1674 aa19.8■□□□□ 0.76
LINC00840-201ENST00000431737 URB2Q14146 1524 aaKnown RBP19.79■□□□□ 0.76
LINC00840-201ENST00000431737 VPS8Q8N3P4 1428 aa19.78■□□□□ 0.76
LINC00840-201ENST00000431737 IGF1RP08069 1367 aa19.78■□□□□ 0.76
LINC00840-201ENST00000431737 DNAJC5BQ9UF47 199 aa19.72■□□□□ 0.75
LINC00840-201ENST00000431737 CUL7Q14999 1698 aa19.72■□□□□ 0.75
LINC00840-201ENST00000431737 RAD54L2Q9Y4B4 1467 aa19.7■□□□□ 0.74
LINC00840-201ENST00000431737 ABCA5Q8WWZ7 1642 aa19.69■□□□□ 0.74
LINC00840-201ENST00000431737 ARAP1Q96P48 1450 aa19.69■□□□□ 0.74
LINC00840-201ENST00000431737 CARMIL1Q5VZK9 1371 aa19.66■□□□□ 0.74
LINC00840-201ENST00000431737 TARBP1Q13395 1621 aaKnown RBP19.62■□□□□ 0.73
LINC00840-201ENST00000431737 PPARGC1BQ86YN6 1023 aaKnown RBP19.61■□□□□ 0.73
LINC00840-201ENST00000431737 ARHGAP35Q9NRY4 1499 aa19.6■□□□□ 0.73
LINC00840-201ENST00000431737 MRC2Q9UBG0 1479 aa19.58■□□□□ 0.73
LINC00840-201ENST00000431737 CTTNBP2Q8WZ74 1663 aa19.57■□□□□ 0.72
LINC00840-201ENST00000431737 WDR62O43379 1518 aa19.52■□□□□ 0.71
LINC00840-201ENST00000431737 GAPVD1Q14C86 1478 aa19.51■□□□□ 0.71
LINC00840-201ENST00000431737 ZEB1P37275 1124 aaPredicted RBP19.5■□□□□ 0.71
LINC00840-201ENST00000431737 EFCAB5A4FU69 1503 aa19.49■□□□□ 0.71
LINC00840-201ENST00000431737 PBRM1Q86U86 1689 aa19.49■□□□□ 0.71
LINC00840-201ENST00000431737 MAP3K1Q13233 1512 aa19.45■□□□□ 0.7
LINC00840-201ENST00000431737 TDRD9Q8NDG6 1382 aaKnown RBP19.43■□□□□ 0.7
LINC00840-201ENST00000431737 APLP2Q06481 763 aa19.43■□□□□ 0.7
LINC00840-201ENST00000431737 RANGAP1P46060 587 aaPredicted RBP19.41■□□□□ 0.7
LINC00840-201ENST00000431737 IFT140Q96RY7 1462 aa19.4■□□□□ 0.7
LINC00840-201ENST00000431737 THOC2Q8NI27 1593 aaKnown RBP19.39■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms