RNA–Protein interactions for RNA: ENST00000431460.1

TRERNA1-201, translation regulatory long non-coding RNA 1, humanhuman

TSL 2 BASIC

Gene TRERNA1, Length 462 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRERNA1-201ENST00000431460 NISCHQ9Y2I1 1504 aa29.05■■■□□ 2.24
TRERNA1-201ENST00000431460 CCDC180Q9P1Z9 1646 aa25.9■■□□□ 1.74
TRERNA1-201ENST00000431460 ABCC9O60706 1549 aa25.65■■□□□ 1.7
TRERNA1-201ENST00000431460 RB1CC1Q8TDY2 1594 aa24.5■■□□□ 1.51
TRERNA1-201ENST00000431460 DCAF8L2P0C7V8 631 aa24.49■■□□□ 1.51
TRERNA1-201ENST00000431460 NACADO15069 1562 aa24.39■■□□□ 1.5
TRERNA1-201ENST00000431460 ZCCHC6Q5VYS8 1495 aaKnown RBP24.18■■□□□ 1.46
TRERNA1-201ENST00000431460 MYO15BQ96JP2 1530 aa24.1■■□□□ 1.45
TRERNA1-201ENST00000431460 UNC13AQ9UPW8 1703 aa23.96■■□□□ 1.43
TRERNA1-201ENST00000431460 DCAF1Q9Y4B6 1507 aa23.95■■□□□ 1.43
TRERNA1-201ENST00000431460 PABPN1Q86U42 306 aaKnown RBP eCLIP23.94■■□□□ 1.42
TRERNA1-201ENST00000431460 BICRAQ9NZM4 1560 aa23.77■■□□□ 1.4
TRERNA1-201ENST00000431460 SCRIBQ14160 1630 aa23.74■■□□□ 1.39
TRERNA1-201ENST00000431460 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
TRERNA1-201ENST00000431460 SHROOM4Q9ULL8 1493 aa23.41■■□□□ 1.34
TRERNA1-201ENST00000431460 EIF4G1Q04637 1599 aaKnown RBP23.18■■□□□ 1.3
TRERNA1-201ENST00000431460 CC2D2AQ9P2K1 1620 aa23.15■■□□□ 1.3
TRERNA1-201ENST00000431460 CECR2Q9BXF3 1484 aa23.03■■□□□ 1.28
TRERNA1-201ENST00000431460 SMARCA4P51532 1647 aa22.62■■□□□ 1.21
TRERNA1-201ENST00000431460 BAZ1AQ9NRL2 1556 aaPredicted RBP22.54■■□□□ 1.2
TRERNA1-201ENST00000431460 ATAD2BQ9ULI0 1458 aa22.53■■□□□ 1.2
TRERNA1-201ENST00000431460 NCAPD3P42695 1498 aa22.49■■□□□ 1.19
TRERNA1-201ENST00000431460 SMARCA2P51531 1590 aa22.48■■□□□ 1.19
TRERNA1-201ENST00000431460 MROH2BQ7Z745 1585 aa22.43■■□□□ 1.18
TRERNA1-201ENST00000431460 HMGXB3Q12766 1538 aa22.39■■□□□ 1.17
TRERNA1-201ENST00000431460 BAZ1BQ9UIG0 1483 aaKnown RBP22.36■■□□□ 1.17
TRERNA1-201ENST00000431460 PEG3Q9GZU2 1588 aa22.33■■□□□ 1.16
TRERNA1-201ENST00000431460 WIZO95785 1651 aa22.2■■□□□ 1.15
TRERNA1-201ENST00000431460 NESP48681 1621 aa22.13■■□□□ 1.13
TRERNA1-201ENST00000431460 ERCC6Q03468 1493 aa22.12■■□□□ 1.13
TRERNA1-201ENST00000431460 RSF1Q96T23 1441 aaPredicted RBP22.07■■□□□ 1.12
TRERNA1-201ENST00000431460 LAMC3Q9Y6N6 1575 aa21.96■■□□□ 1.11
TRERNA1-201ENST00000431460 TOP2AP11388 1531 aaKnown RBP21.92■■□□□ 1.1
TRERNA1-201ENST00000431460 CUX2O14529 1486 aa21.87■■□□□ 1.09
TRERNA1-201ENST00000431460 CADPSQ9ULU8 1353 aa21.86■■□□□ 1.09
TRERNA1-201ENST00000431460 KIF21AQ7Z4S6 1674 aa21.85■■□□□ 1.09
TRERNA1-201ENST00000431460 PDS5BQ9NTI5 1447 aa21.83■■□□□ 1.09
TRERNA1-201ENST00000431460 THOC2Q8NI27 1593 aaKnown RBP21.8■■□□□ 1.08
TRERNA1-201ENST00000431460 CFTRP13569 1480 aa21.69■■□□□ 1.06
TRERNA1-201ENST00000431460 CCDC88BA6NC98 1476 aa21.66■■□□□ 1.06
TRERNA1-201ENST00000431460 FANCD2Q9BXW9 1451 aa21.65■■□□□ 1.06
TRERNA1-201ENST00000431460 MRC2Q9UBG0 1479 aa21.65■■□□□ 1.06
TRERNA1-201ENST00000431460 CEP164Q9UPV0 1460 aa21.65■■□□□ 1.06
TRERNA1-201ENST00000431460 WDR62O43379 1518 aa21.57■■□□□ 1.04
TRERNA1-201ENST00000431460 PRDM2Q13029 1718 aa21.52■■□□□ 1.03
TRERNA1-201ENST00000431460 SUPT5HO00267 1087 aaKnown RBP21.48■■□□□ 1.03
TRERNA1-201ENST00000431460 URB2Q14146 1524 aaKnown RBP21.45■■□□□ 1.02
TRERNA1-201ENST00000431460 DNAJC5Q9H3Z4 198 aa21.42■■□□□ 1.02
TRERNA1-201ENST00000431460 TOPBP1Q92547 1522 aa21.28■■□□□ 1
TRERNA1-201ENST00000431460 DNMBPQ6XZF7 1577 aa21.23■□□□□ 0.99
TRERNA1-201ENST00000431460 ABCC8Q09428 1581 aa21.19■□□□□ 0.98
TRERNA1-201ENST00000431460 IFT140Q96RY7 1462 aa21.17■□□□□ 0.98
TRERNA1-201ENST00000431460 ZNF608Q9ULD9 1512 aaPredicted RBP21.14■□□□□ 0.98
TRERNA1-201ENST00000431460 POLA1P09884 1462 aaPredicted RBP21.09■□□□□ 0.97
TRERNA1-201ENST00000431460 CUX1P39880 1505 aa21.06■□□□□ 0.96
TRERNA1-201ENST00000431460 EIF4G3O43432 1585 aaKnown RBP21.06■□□□□ 0.96
TRERNA1-201ENST00000431460 TARBP1Q13395 1621 aaKnown RBP21.04■□□□□ 0.96
TRERNA1-201ENST00000431460 RAD54L2Q9Y4B4 1467 aa21.04■□□□□ 0.96
TRERNA1-201ENST00000431460 FGD5Q6ZNL6 1462 aa21.03■□□□□ 0.96
TRERNA1-201ENST00000431460 AQRO60306 1485 aaKnown RBP eCLIP21■□□□□ 0.95
TRERNA1-201ENST00000431460 SOGA1O94964 1423 aa20.99■□□□□ 0.95
TRERNA1-201ENST00000431460 TDRD9Q8NDG6 1382 aaKnown RBP20.94■□□□□ 0.94
TRERNA1-201ENST00000431460 OSCARQ8IYS5 282 aa20.93■□□□□ 0.94
TRERNA1-201ENST00000431460 FBLN2P98095 1184 aa20.84■□□□□ 0.93
TRERNA1-201ENST00000431460 WDR97A6NE52 1622 aa20.84■□□□□ 0.93
TRERNA1-201ENST00000431460 WRNQ14191 1432 aaPredicted RBP eCLIP20.84■□□□□ 0.93
TRERNA1-201ENST00000431460 SYNJ1O43426 1573 aa20.83■□□□□ 0.92
TRERNA1-201ENST00000431460 CHD1O14646 1710 aa20.82■□□□□ 0.92
TRERNA1-201ENST00000431460 SNAPC4Q5SXM2 1469 aa20.81■□□□□ 0.92
TRERNA1-201ENST00000431460 TOP2BQ02880 1626 aa20.79■□□□□ 0.92
TRERNA1-201ENST00000431460 BIVM-ERCC5R4GMW8 1640 aa20.79■□□□□ 0.92
TRERNA1-201ENST00000431460 TRIM41Q8WV44 630 aa20.79■□□□□ 0.92
TRERNA1-201ENST00000431460 GRIN2BQ13224 1484 aa20.76■□□□□ 0.91
TRERNA1-201ENST00000431460 ABCA10Q8WWZ4 1543 aa20.76■□□□□ 0.91
TRERNA1-201ENST00000431460 GAPVD1Q14C86 1478 aa20.75■□□□□ 0.91
TRERNA1-201ENST00000431460 PBRM1Q86U86 1689 aa20.74■□□□□ 0.91
TRERNA1-201ENST00000431460 ABCA5Q8WWZ7 1642 aa20.72■□□□□ 0.91
TRERNA1-201ENST00000431460 MAGI1Q96QZ7 1491 aaPredicted RBP20.71■□□□□ 0.91
TRERNA1-201ENST00000431460 CHMP7Q8WUX9 453 aaPredicted RBP20.69■□□□□ 0.9
TRERNA1-201ENST00000431460 RIMBP3CA6NJZ7 1639 aa20.67■□□□□ 0.9
TRERNA1-201ENST00000431460 RIMBP3BA6NNM3 1639 aa20.67■□□□□ 0.9
TRERNA1-201ENST00000431460 RIMBP3Q9UFD9 1639 aa20.67■□□□□ 0.9
TRERNA1-201ENST00000431460 SYNJ2O15056 1496 aa20.65■□□□□ 0.9
TRERNA1-201ENST00000431460 ARHGEF11O15085 1522 aa20.64■□□□□ 0.9
TRERNA1-201ENST00000431460 ADAMTS12P58397 1594 aa20.56■□□□□ 0.88
TRERNA1-201ENST00000431460 CLASP1Q7Z460 1538 aa20.55■□□□□ 0.88
TRERNA1-201ENST00000431460 GRIN2AQ12879 1464 aa20.51■□□□□ 0.87
TRERNA1-201ENST00000431460 ERICH3Q5RHP9 1530 aa20.5■□□□□ 0.87
TRERNA1-201ENST00000431460 FHAD1B1AJZ9 1412 aa20.48■□□□□ 0.87
TRERNA1-201ENST00000431460 CYB5RLQ6IPT4 315 aa20.48■□□□□ 0.87
TRERNA1-201ENST00000431460 ARAP1Q96P48 1450 aa20.47■□□□□ 0.87
TRERNA1-201ENST00000431460 CEP170Q5SW79 1584 aa20.44■□□□□ 0.86
TRERNA1-201ENST00000431460 KIF27Q86VH2 1401 aa20.41■□□□□ 0.86
TRERNA1-201ENST00000431460 NUP160Q12769 1436 aa20.39■□□□□ 0.85
TRERNA1-201ENST00000431460 IGF1RP08069 1367 aa20.33■□□□□ 0.84
TRERNA1-201ENST00000431460 ERCC6L2Q5T890 1561 aa20.32■□□□□ 0.84
TRERNA1-201ENST00000431460 CUL7Q14999 1698 aa20.3■□□□□ 0.84
TRERNA1-201ENST00000431460 RUSC2Q8N2Y8 1516 aa20.27■□□□□ 0.83
TRERNA1-201ENST00000431460 SHROOM2Q13796 1616 aa20.26■□□□□ 0.83
TRERNA1-201ENST00000431460 CARMIL1Q5VZK9 1371 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms