RNA–Protein interactions for RNA: ENST00000431048.5

PTPRA-207, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5

Gene PTPRA, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-207ENST00000431048 NISCHQ9Y2I1 1504 aa56.2■■■■■ 6.59
PTPRA-207ENST00000431048 ABCC9O60706 1549 aa51.1■■■■■ 5.77
PTPRA-207ENST00000431048 CCDC180Q9P1Z9 1646 aa50.61■■■■■ 5.69
PTPRA-207ENST00000431048 DNAJC5BQ9UF47 199 aa48.51■■■■■ 5.36
PTPRA-207ENST00000431048 RB1CC1Q8TDY2 1594 aa48.46■■■■■ 5.35
PTPRA-207ENST00000431048 NACADO15069 1562 aa48.04■■■■■ 5.28
PTPRA-207ENST00000431048 DCAF8L2P0C7V8 631 aa47.61■■■■■ 5.21
PTPRA-207ENST00000431048 PABPN1Q86U42 306 aaKnown RBP eCLIP47.53■■■■■ 5.2
PTPRA-207ENST00000431048 MYO15BQ96JP2 1530 aa47.29■■■■■ 5.16
PTPRA-207ENST00000431048 UNC13AQ9UPW8 1703 aa47.23■■■■■ 5.15
PTPRA-207ENST00000431048 BICRAQ9NZM4 1560 aa47.06■■■■■ 5.12
PTPRA-207ENST00000431048 SHROOM4Q9ULL8 1493 aa46.47■■■■■ 5.03
PTPRA-207ENST00000431048 DCAF1Q9Y4B6 1507 aa46.46■■■■■ 5.03
PTPRA-207ENST00000431048 ZCCHC6Q5VYS8 1495 aaKnown RBP46.44■■■■■ 5.02
PTPRA-207ENST00000431048 CC2D2AQ9P2K1 1620 aa46.14■■■■■ 4.98
PTPRA-207ENST00000431048 CECR2Q9BXF3 1484 aa46.13■■■■■ 4.98
PTPRA-207ENST00000431048 SCRIBQ14160 1630 aa45.99■■■■■ 4.95
PTPRA-207ENST00000431048 EIF4G1Q04637 1599 aaKnown RBP45.93■■■■■ 4.94
PTPRA-207ENST00000431048 DNAJC5Q9H3Z4 198 aa45■■■■■ 4.79
PTPRA-207ENST00000431048 NCAPD3P42695 1498 aa44.41■■■■■ 4.7
PTPRA-207ENST00000431048 CUX2O14529 1486 aa44.35■■■■■ 4.69
PTPRA-207ENST00000431048 ERCC6Q03468 1493 aa44.16■■■■■ 4.66
PTPRA-207ENST00000431048 ATAD2BQ9ULI0 1458 aa44.15■■■■■ 4.66
PTPRA-207ENST00000431048 SMARCA2P51531 1590 aa43.97■■■■■ 4.63
PTPRA-207ENST00000431048 HMGXB3Q12766 1538 aa43.95■■■■■ 4.63
PTPRA-207ENST00000431048 SMARCA4P51532 1647 aa43.89■■■■■ 4.62
PTPRA-207ENST00000431048 NESP48681 1621 aa43.74■■■■■ 4.59
PTPRA-207ENST00000431048 BAZ1AQ9NRL2 1556 aaPredicted RBP43.64■■■■■ 4.58
PTPRA-207ENST00000431048 BAZ1BQ9UIG0 1483 aaKnown RBP43.64■■■■■ 4.58
PTPRA-207ENST00000431048 PEG3Q9GZU2 1588 aa43.54■■■■■ 4.56
PTPRA-207ENST00000431048 LAMC3Q9Y6N6 1575 aa43.41■■■■■ 4.54
PTPRA-207ENST00000431048 THOC2Q8NI27 1593 aaKnown RBP43.4■■■■■ 4.54
PTPRA-207ENST00000431048 MROH2BQ7Z745 1585 aa43.25■■■■■ 4.51
PTPRA-207ENST00000431048 PDS5BQ9NTI5 1447 aa43.23■■■■■ 4.51
PTPRA-207ENST00000431048 KIF21AQ7Z4S6 1674 aa43.09■■■■■ 4.49
PTPRA-207ENST00000431048 CADPSQ9ULU8 1353 aa43.02■■■■■ 4.48
PTPRA-207ENST00000431048 MRC2Q9UBG0 1479 aa42.83■■■■■ 4.45
PTPRA-207ENST00000431048 WDR62O43379 1518 aa42.74■■■■■ 4.43
PTPRA-207ENST00000431048 TRIM41Q8WV44 630 aa42.65■■■■■ 4.42
PTPRA-207ENST00000431048 WIZO95785 1651 aa42.64■■■■■ 4.42
PTPRA-207ENST00000431048 CEP164Q9UPV0 1460 aa42.54■■■■■ 4.4
PTPRA-207ENST00000431048 FANCD2Q9BXW9 1451 aa42.46■■■■■ 4.39
PTPRA-207ENST00000431048 CFTRP13569 1480 aa42.4■■■■■ 4.38
PTPRA-207ENST00000431048 OSCARQ8IYS5 282 aa42.29■■■■■ 4.36
PTPRA-207ENST00000431048 RSF1Q96T23 1441 aaPredicted RBP42.22■■■■■ 4.35
PTPRA-207ENST00000431048 TOP2AP11388 1531 aaKnown RBP42.14■■■■■ 4.34
PTPRA-207ENST00000431048 URB2Q14146 1524 aaKnown RBP42.14■■■■■ 4.34
PTPRA-207ENST00000431048 PRDM2Q13029 1718 aa41.77■■■■■ 4.28
PTPRA-207ENST00000431048 IFT140Q96RY7 1462 aa41.76■■■■■ 4.28
PTPRA-207ENST00000431048 CCDC88BA6NC98 1476 aa41.7■■■■■ 4.27
PTPRA-207ENST00000431048 ZNF608Q9ULD9 1512 aaPredicted RBP41.69■■■■■ 4.26
PTPRA-207ENST00000431048 RIMBP3CA6NJZ7 1639 aa41.66■■■■■ 4.26
PTPRA-207ENST00000431048 RIMBP3BA6NNM3 1639 aa41.66■■■■■ 4.26
PTPRA-207ENST00000431048 RIMBP3Q9UFD9 1639 aa41.66■■■■■ 4.26
PTPRA-207ENST00000431048 TOPBP1Q92547 1522 aa41.59■■■■■ 4.25
PTPRA-207ENST00000431048 ABCC8Q09428 1581 aa41.55■■■■■ 4.24
PTPRA-207ENST00000431048 ARHGEF11O15085 1522 aa41.5■■■■■ 4.23
PTPRA-207ENST00000431048 DNMBPQ6XZF7 1577 aa41.38■■■■■ 4.22
PTPRA-207ENST00000431048 EIF4G3O43432 1585 aaKnown RBP41.37■■■■■ 4.21
PTPRA-207ENST00000431048 CYB5RLQ6IPT4 315 aa41.27■■■■■ 4.2
PTPRA-207ENST00000431048 AQRO60306 1485 aaKnown RBP eCLIP41.27■■■■■ 4.2
PTPRA-207ENST00000431048 TARBP1Q13395 1621 aaKnown RBP41.26■■■■■ 4.19
PTPRA-207ENST00000431048 POLA1P09884 1462 aaPredicted RBP41.14■■■■■ 4.18
PTPRA-207ENST00000431048 CHD1O14646 1710 aa41.13■■■■■ 4.18
PTPRA-207ENST00000431048 FBLN2P98095 1184 aa41.08■■■■■ 4.17
PTPRA-207ENST00000431048 ARAP1Q96P48 1450 aa41.06■■■■■ 4.16
PTPRA-207ENST00000431048 SOGA1O94964 1423 aa40.98■■■■■ 4.15
PTPRA-207ENST00000431048 RAD54L2Q9Y4B4 1467 aa40.97■■■■■ 4.15
PTPRA-207ENST00000431048 TRHP20396 242 aaPredicted RBP40.95■■■■■ 4.15
PTPRA-207ENST00000431048 TDRD9Q8NDG6 1382 aaKnown RBP40.94■■■■■ 4.14
PTPRA-207ENST00000431048 WDR97A6NE52 1622 aa40.85■■■■■ 4.13
PTPRA-207ENST00000431048 SNAPC4Q5SXM2 1469 aa40.8■■■■■ 4.12
PTPRA-207ENST00000431048 FGD5Q6ZNL6 1462 aa40.77■■■■■ 4.12
PTPRA-207ENST00000431048 CHMP7Q8WUX9 453 aaPredicted RBP40.76■■■■■ 4.12
PTPRA-207ENST00000431048 CLASP1Q7Z460 1538 aa40.76■■■■■ 4.12
PTPRA-207ENST00000431048 MAGI1Q96QZ7 1491 aaPredicted RBP40.73■■■■■ 4.11
PTPRA-207ENST00000431048 GRIN2BQ13224 1484 aa40.68■■■■■ 4.1
PTPRA-207ENST00000431048 SYNJ1O43426 1573 aa40.67■■■■■ 4.1
PTPRA-207ENST00000431048 CUX1P39880 1505 aa40.67■■■■■ 4.1
PTPRA-207ENST00000431048 SYNJ2O15056 1496 aa40.59■■■■■ 4.09
PTPRA-207ENST00000431048 GAPVD1Q14C86 1478 aa40.45■■■■■ 4.07
PTPRA-207ENST00000431048 ABCA10Q8WWZ4 1543 aa40.35■■■■■ 4.05
PTPRA-207ENST00000431048 PBRM1Q86U86 1689 aa40.34■■■■■ 4.05
PTPRA-207ENST00000431048 ABCA5Q8WWZ7 1642 aa40.26■■■■■ 4.04
PTPRA-207ENST00000431048 AEBP2Q6ZN18 517 aaPredicted RBP40.16■■■■■ 4.02
PTPRA-207ENST00000431048 GRIN2AQ12879 1464 aa40.13■■■■■ 4.01
PTPRA-207ENST00000431048 WRNQ14191 1432 aaPredicted RBP eCLIP40.08■■■■■ 4.01
PTPRA-207ENST00000431048 NUP160Q12769 1436 aa40.06■■■■■ 4
PTPRA-207ENST00000431048 ERCC6L2Q5T890 1561 aa40.02■■■■■ 4
PTPRA-207ENST00000431048 ADAMTS12P58397 1594 aa39.98■■■■□ 3.99
PTPRA-207ENST00000431048 CEP170Q5SW79 1584 aa39.97■■■■□ 3.99
PTPRA-207ENST00000431048 FHAD1B1AJZ9 1412 aa39.95■■■■□ 3.99
PTPRA-207ENST00000431048 SHROOM2Q13796 1616 aa39.88■■■■□ 3.97
PTPRA-207ENST00000431048 SUPT5HO00267 1087 aaKnown RBP39.88■■■■□ 3.97
PTPRA-207ENST00000431048 TOP2BQ02880 1626 aa39.87■■■■□ 3.97
PTPRA-207ENST00000431048 BIVM-ERCC5R4GMW8 1640 aa39.85■■■■□ 3.97
PTPRA-207ENST00000431048 ERICH3Q5RHP9 1530 aa39.82■■■■□ 3.97
PTPRA-207ENST00000431048 JPH4Q96JJ6 628 aa39.69■■■■□ 3.94
PTPRA-207ENST00000431048 PRG4Q92954 1404 aaPredicted RBP39.68■■■■□ 3.94
PTPRA-207ENST00000431048 KIF13AQ9H1H9 1805 aa39.56■■■■□ 3.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms