RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 NISCHQ9Y2I1 1504 aa40.57■■■■■ 4.09
TTC28-202ENST00000431039 ABCC9O60706 1549 aa36.6■■■■□ 3.45
TTC28-202ENST00000431039 CCDC180Q9P1Z9 1646 aa36.51■■■■□ 3.43
TTC28-202ENST00000431039 RB1CC1Q8TDY2 1594 aa34.77■■■■□ 3.16
TTC28-202ENST00000431039 NACADO15069 1562 aa34.48■■■■□ 3.11
TTC28-202ENST00000431039 DNAJC5BQ9UF47 199 aa34.37■■■■□ 3.09
TTC28-202ENST00000431039 DCAF8L2P0C7V8 631 aa34.32■■■■□ 3.08
TTC28-202ENST00000431039 UNC13AQ9UPW8 1703 aa34.12■■■■□ 3.05
TTC28-202ENST00000431039 PABPN1Q86U42 306 aaKnown RBP eCLIP34.03■■■■□ 3.04
TTC28-202ENST00000431039 MYO15BQ96JP2 1530 aa33.91■■■■□ 3.02
TTC28-202ENST00000431039 BICRAQ9NZM4 1560 aa33.78■■■■□ 3
TTC28-202ENST00000431039 ZCCHC6Q5VYS8 1495 aaKnown RBP33.61■■■□□ 2.97
TTC28-202ENST00000431039 DCAF1Q9Y4B6 1507 aa33.46■■■□□ 2.95
TTC28-202ENST00000431039 SCRIBQ14160 1630 aa33.31■■■□□ 2.92
TTC28-202ENST00000431039 SHROOM4Q9ULL8 1493 aa33.22■■■□□ 2.91
TTC28-202ENST00000431039 CC2D2AQ9P2K1 1620 aa33.07■■■□□ 2.88
TTC28-202ENST00000431039 EIF4G1Q04637 1599 aaKnown RBP32.96■■■□□ 2.87
TTC28-202ENST00000431039 CECR2Q9BXF3 1484 aa32.95■■■□□ 2.87
TTC28-202ENST00000431039 NCAPD3P42695 1498 aa31.79■■■□□ 2.68
TTC28-202ENST00000431039 SMARCA4P51532 1647 aa31.72■■■□□ 2.67
TTC28-202ENST00000431039 ATAD2BQ9ULI0 1458 aa31.72■■■□□ 2.67
TTC28-202ENST00000431039 SMARCA2P51531 1590 aa31.64■■■□□ 2.65
TTC28-202ENST00000431039 ERCC6Q03468 1493 aa31.6■■■□□ 2.65
TTC28-202ENST00000431039 HMGXB3Q12766 1538 aa31.59■■■□□ 2.65
TTC28-202ENST00000431039 DNAJC5Q9H3Z4 198 aa31.59■■■□□ 2.65
TTC28-202ENST00000431039 CUX2O14529 1486 aa31.52■■■□□ 2.64
TTC28-202ENST00000431039 BAZ1AQ9NRL2 1556 aaPredicted RBP31.51■■■□□ 2.63
TTC28-202ENST00000431039 BAZ1BQ9UIG0 1483 aaKnown RBP31.44■■■□□ 2.62
TTC28-202ENST00000431039 NESP48681 1621 aa31.42■■■□□ 2.62
TTC28-202ENST00000431039 PEG3Q9GZU2 1588 aa31.35■■■□□ 2.61
TTC28-202ENST00000431039 MROH2BQ7Z745 1585 aa31.29■■■□□ 2.6
TTC28-202ENST00000431039 LAMC3Q9Y6N6 1575 aa31.15■■■□□ 2.58
TTC28-202ENST00000431039 THOC2Q8NI27 1593 aaKnown RBP31.14■■■□□ 2.58
TTC28-202ENST00000431039 KIF21AQ7Z4S6 1674 aa31.09■■■□□ 2.57
TTC28-202ENST00000431039 WIZO95785 1651 aa30.97■■■□□ 2.55
TTC28-202ENST00000431039 PDS5BQ9NTI5 1447 aa30.93■■■□□ 2.54
TTC28-202ENST00000431039 CADPSQ9ULU8 1353 aa30.83■■■□□ 2.53
TTC28-202ENST00000431039 MRC2Q9UBG0 1479 aa30.71■■■□□ 2.51
TTC28-202ENST00000431039 WDR62O43379 1518 aa30.65■■■□□ 2.5
TTC28-202ENST00000431039 CEP164Q9UPV0 1460 aa30.58■■■□□ 2.49
TTC28-202ENST00000431039 RSF1Q96T23 1441 aaPredicted RBP30.56■■■□□ 2.48
TTC28-202ENST00000431039 FANCD2Q9BXW9 1451 aa30.52■■■□□ 2.48
TTC28-202ENST00000431039 TOP2AP11388 1531 aaKnown RBP30.52■■■□□ 2.48
TTC28-202ENST00000431039 CFTRP13569 1480 aa30.46■■■□□ 2.47
TTC28-202ENST00000431039 PRDM2Q13029 1718 aa30.32■■■□□ 2.44
TTC28-202ENST00000431039 URB2Q14146 1524 aaKnown RBP30.3■■■□□ 2.44
TTC28-202ENST00000431039 TRIM41Q8WV44 630 aa30.26■■■□□ 2.43
TTC28-202ENST00000431039 CCDC88BA6NC98 1476 aa30.15■■■□□ 2.42
TTC28-202ENST00000431039 OSCARQ8IYS5 282 aa30.04■■■□□ 2.4
TTC28-202ENST00000431039 TOPBP1Q92547 1522 aa29.95■■■□□ 2.38
TTC28-202ENST00000431039 ZNF608Q9ULD9 1512 aaPredicted RBP29.95■■■□□ 2.38
TTC28-202ENST00000431039 IFT140Q96RY7 1462 aa29.94■■■□□ 2.38
TTC28-202ENST00000431039 DNMBPQ6XZF7 1577 aa29.85■■■□□ 2.37
TTC28-202ENST00000431039 EIF4G3O43432 1585 aaKnown RBP29.82■■■□□ 2.36
TTC28-202ENST00000431039 ABCC8Q09428 1581 aa29.82■■■□□ 2.36
TTC28-202ENST00000431039 RIMBP3CA6NJZ7 1639 aa29.78■■■□□ 2.36
TTC28-202ENST00000431039 RIMBP3BA6NNM3 1639 aa29.78■■■□□ 2.36
TTC28-202ENST00000431039 RIMBP3Q9UFD9 1639 aa29.78■■■□□ 2.36
TTC28-202ENST00000431039 TARBP1Q13395 1621 aaKnown RBP29.71■■■□□ 2.35
TTC28-202ENST00000431039 CHD1O14646 1710 aa29.68■■■□□ 2.34
TTC28-202ENST00000431039 AQRO60306 1485 aaKnown RBP eCLIP29.65■■■□□ 2.34
TTC28-202ENST00000431039 POLA1P09884 1462 aaPredicted RBP29.63■■■□□ 2.33
TTC28-202ENST00000431039 ARHGEF11O15085 1522 aa29.63■■■□□ 2.33
TTC28-202ENST00000431039 RAD54L2Q9Y4B4 1467 aa29.55■■■□□ 2.32
TTC28-202ENST00000431039 FBLN2P98095 1184 aa29.48■■■□□ 2.31
TTC28-202ENST00000431039 SOGA1O94964 1423 aa29.46■■■□□ 2.31
TTC28-202ENST00000431039 FGD5Q6ZNL6 1462 aa29.45■■■□□ 2.31
TTC28-202ENST00000431039 TDRD9Q8NDG6 1382 aaKnown RBP29.44■■■□□ 2.3
TTC28-202ENST00000431039 CUX1P39880 1505 aa29.41■■■□□ 2.3
TTC28-202ENST00000431039 CYB5RLQ6IPT4 315 aa29.39■■■□□ 2.3
TTC28-202ENST00000431039 SNAPC4Q5SXM2 1469 aa29.36■■■□□ 2.29
TTC28-202ENST00000431039 WDR97A6NE52 1622 aa29.36■■■□□ 2.29
TTC28-202ENST00000431039 SUPT5HO00267 1087 aaKnown RBP29.36■■■□□ 2.29
TTC28-202ENST00000431039 ARAP1Q96P48 1450 aa29.34■■■□□ 2.29
TTC28-202ENST00000431039 MAGI1Q96QZ7 1491 aaPredicted RBP29.24■■■□□ 2.27
TTC28-202ENST00000431039 PBRM1Q86U86 1689 aa29.24■■■□□ 2.27
TTC28-202ENST00000431039 CLASP1Q7Z460 1538 aa29.24■■■□□ 2.27
TTC28-202ENST00000431039 GRIN2BQ13224 1484 aa29.23■■■□□ 2.27
TTC28-202ENST00000431039 SYNJ1O43426 1573 aa29.22■■■□□ 2.27
TTC28-202ENST00000431039 CHMP7Q8WUX9 453 aaPredicted RBP29.21■■■□□ 2.27
TTC28-202ENST00000431039 SYNJ2O15056 1496 aa29.15■■■□□ 2.26
TTC28-202ENST00000431039 GAPVD1Q14C86 1478 aa29.13■■■□□ 2.25
TTC28-202ENST00000431039 TRHP20396 242 aaPredicted RBP29.12■■■□□ 2.25
TTC28-202ENST00000431039 ABCA5Q8WWZ7 1642 aa29.09■■■□□ 2.25
TTC28-202ENST00000431039 ABCA10Q8WWZ4 1543 aa29.07■■■□□ 2.24
TTC28-202ENST00000431039 BIVM-ERCC5R4GMW8 1640 aa28.94■■■□□ 2.22
TTC28-202ENST00000431039 WRNQ14191 1432 aaPredicted RBP eCLIP28.92■■■□□ 2.22
TTC28-202ENST00000431039 TOP2BQ02880 1626 aa28.91■■■□□ 2.22
TTC28-202ENST00000431039 ADAMTS12P58397 1594 aa28.89■■■□□ 2.22
TTC28-202ENST00000431039 GRIN2AQ12879 1464 aa28.87■■■□□ 2.21
TTC28-202ENST00000431039 CEP170Q5SW79 1584 aa28.82■■■□□ 2.2
TTC28-202ENST00000431039 ERCC6L2Q5T890 1561 aa28.82■■■□□ 2.2
TTC28-202ENST00000431039 NUP160Q12769 1436 aa28.75■■■□□ 2.19
TTC28-202ENST00000431039 FHAD1B1AJZ9 1412 aa28.73■■■□□ 2.19
TTC28-202ENST00000431039 ERICH3Q5RHP9 1530 aa28.71■■■□□ 2.19
TTC28-202ENST00000431039 SHROOM2Q13796 1616 aa28.69■■■□□ 2.18
TTC28-202ENST00000431039 PRG4Q92954 1404 aaPredicted RBP28.5■■■□□ 2.15
TTC28-202ENST00000431039 RUSC2Q8N2Y8 1516 aa28.49■■■□□ 2.15
TTC28-202ENST00000431039 JPH4Q96JJ6 628 aa28.43■■■□□ 2.14
TTC28-202ENST00000431039 KIF13AQ9H1H9 1805 aa28.43■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms