RNA–Protein interactions for RNA: ENST00000430982.1

PTCD1-204, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 4

Gene PTCD1, Length 571 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-204ENST00000430982 NISCHQ9Y2I1 1504 aa37.4■■■■□ 3.58
PTCD1-204ENST00000430982 ABCC9O60706 1549 aa34.24■■■■□ 3.07
PTCD1-204ENST00000430982 CCDC180Q9P1Z9 1646 aa33.85■■■■□ 3.01
PTCD1-204ENST00000430982 DNAJC5BQ9UF47 199 aa32.64■■■□□ 2.82
PTCD1-204ENST00000430982 RB1CC1Q8TDY2 1594 aa32.42■■■□□ 2.78
PTCD1-204ENST00000430982 NACADO15069 1562 aa32.1■■■□□ 2.73
PTCD1-204ENST00000430982 UNC13AQ9UPW8 1703 aa31.72■■■□□ 2.67
PTCD1-204ENST00000430982 PABPN1Q86U42 306 aaKnown RBP eCLIP31.72■■■□□ 2.67
PTCD1-204ENST00000430982 BICRAQ9NZM4 1560 aa31.57■■■□□ 2.64
PTCD1-204ENST00000430982 MYO15BQ96JP2 1530 aa31.57■■■□□ 2.64
PTCD1-204ENST00000430982 DCAF8L2P0C7V8 631 aa31.49■■■□□ 2.63
PTCD1-204ENST00000430982 SHROOM4Q9ULL8 1493 aa31.14■■■□□ 2.58
PTCD1-204ENST00000430982 CC2D2AQ9P2K1 1620 aa30.96■■■□□ 2.55
PTCD1-204ENST00000430982 DCAF1Q9Y4B6 1507 aa30.94■■■□□ 2.54
PTCD1-204ENST00000430982 CECR2Q9BXF3 1484 aa30.94■■■□□ 2.54
PTCD1-204ENST00000430982 ZCCHC6Q5VYS8 1495 aaKnown RBP30.91■■■□□ 2.54
PTCD1-204ENST00000430982 EIF4G1Q04637 1599 aaKnown RBP30.79■■■□□ 2.52
PTCD1-204ENST00000430982 SCRIBQ14160 1630 aa30.69■■■□□ 2.5
PTCD1-204ENST00000430982 DNAJC5Q9H3Z4 198 aa30.38■■■□□ 2.45
PTCD1-204ENST00000430982 CUX2O14529 1486 aa29.84■■■□□ 2.37
PTCD1-204ENST00000430982 NCAPD3P42695 1498 aa29.65■■■□□ 2.34
PTCD1-204ENST00000430982 ERCC6Q03468 1493 aa29.57■■■□□ 2.32
PTCD1-204ENST00000430982 ATAD2BQ9ULI0 1458 aa29.45■■■□□ 2.31
PTCD1-204ENST00000430982 HMGXB3Q12766 1538 aa29.4■■■□□ 2.3
PTCD1-204ENST00000430982 SMARCA2P51531 1590 aa29.34■■■□□ 2.29
PTCD1-204ENST00000430982 NESP48681 1621 aa29.29■■■□□ 2.28
PTCD1-204ENST00000430982 SMARCA4P51532 1647 aa29.29■■■□□ 2.28
PTCD1-204ENST00000430982 THOC2Q8NI27 1593 aaKnown RBP29.2■■■□□ 2.26
PTCD1-204ENST00000430982 PEG3Q9GZU2 1588 aa29.1■■■□□ 2.25
PTCD1-204ENST00000430982 BAZ1BQ9UIG0 1483 aaKnown RBP29.09■■■□□ 2.25
PTCD1-204ENST00000430982 LAMC3Q9Y6N6 1575 aa29.06■■■□□ 2.24
PTCD1-204ENST00000430982 BAZ1AQ9NRL2 1556 aaPredicted RBP29.05■■■□□ 2.24
PTCD1-204ENST00000430982 KIF21AQ7Z4S6 1674 aa28.92■■■□□ 2.22
PTCD1-204ENST00000430982 PDS5BQ9NTI5 1447 aa28.85■■■□□ 2.21
PTCD1-204ENST00000430982 MROH2BQ7Z745 1585 aa28.79■■■□□ 2.2
PTCD1-204ENST00000430982 WDR62O43379 1518 aa28.67■■■□□ 2.18
PTCD1-204ENST00000430982 MRC2Q9UBG0 1479 aa28.66■■■□□ 2.18
PTCD1-204ENST00000430982 CADPSQ9ULU8 1353 aa28.66■■■□□ 2.18
PTCD1-204ENST00000430982 TRIM41Q8WV44 630 aa28.65■■■□□ 2.18
PTCD1-204ENST00000430982 CEP164Q9UPV0 1460 aa28.41■■■□□ 2.14
PTCD1-204ENST00000430982 WIZO95785 1651 aa28.39■■■□□ 2.14
PTCD1-204ENST00000430982 FANCD2Q9BXW9 1451 aa28.34■■■□□ 2.13
PTCD1-204ENST00000430982 CFTRP13569 1480 aa28.27■■■□□ 2.12
PTCD1-204ENST00000430982 OSCARQ8IYS5 282 aa28.25■■■□□ 2.11
PTCD1-204ENST00000430982 URB2Q14146 1524 aaKnown RBP28.18■■■□□ 2.1
PTCD1-204ENST00000430982 RIMBP3CA6NJZ7 1639 aa28.04■■■□□ 2.08
PTCD1-204ENST00000430982 RIMBP3BA6NNM3 1639 aa28.04■■■□□ 2.08
PTCD1-204ENST00000430982 RIMBP3Q9UFD9 1639 aa28.04■■■□□ 2.08
PTCD1-204ENST00000430982 TOP2AP11388 1531 aaKnown RBP28.03■■■□□ 2.08
PTCD1-204ENST00000430982 RSF1Q96T23 1441 aaPredicted RBP28.01■■■□□ 2.08
PTCD1-204ENST00000430982 PRDM2Q13029 1718 aa27.95■■■□□ 2.06
PTCD1-204ENST00000430982 ARHGEF11O15085 1522 aa27.9■■■□□ 2.06
PTCD1-204ENST00000430982 IFT140Q96RY7 1462 aa27.89■■■□□ 2.05
PTCD1-204ENST00000430982 ZNF608Q9ULD9 1512 aaPredicted RBP27.88■■■□□ 2.05
PTCD1-204ENST00000430982 TOPBP1Q92547 1522 aa27.76■■■□□ 2.03
PTCD1-204ENST00000430982 EIF4G3O43432 1585 aaKnown RBP27.73■■■□□ 2.03
PTCD1-204ENST00000430982 CCDC88BA6NC98 1476 aa27.68■■■□□ 2.02
PTCD1-204ENST00000430982 ABCC8Q09428 1581 aa27.65■■■□□ 2.02
PTCD1-204ENST00000430982 DNMBPQ6XZF7 1577 aa27.62■■■□□ 2.01
PTCD1-204ENST00000430982 CHD1O14646 1710 aa27.61■■■□□ 2.01
PTCD1-204ENST00000430982 TARBP1Q13395 1621 aaKnown RBP27.6■■■□□ 2.01
PTCD1-204ENST00000430982 ARAP1Q96P48 1450 aa27.6■■■□□ 2.01
PTCD1-204ENST00000430982 CYB5RLQ6IPT4 315 aa27.57■■■□□ 2
PTCD1-204ENST00000430982 AQRO60306 1485 aaKnown RBP eCLIP27.51■■■□□ 23e-10■■■■■ 28.2
PTCD1-204ENST00000430982 POLA1P09884 1462 aaPredicted RBP27.44■■□□□ 1.98
PTCD1-204ENST00000430982 SUPT5HO00267 1087 aaKnown RBP27.4■■□□□ 1.98
PTCD1-204ENST00000430982 TRHP20396 242 aaPredicted RBP27.39■■□□□ 1.98
PTCD1-204ENST00000430982 CLASP1Q7Z460 1538 aa27.36■■□□□ 1.97
PTCD1-204ENST00000430982 WDR97A6NE52 1622 aa27.32■■□□□ 1.96
PTCD1-204ENST00000430982 RAD54L2Q9Y4B4 1467 aa27.3■■□□□ 1.96
PTCD1-204ENST00000430982 FBLN2P98095 1184 aa27.29■■□□□ 1.96
PTCD1-204ENST00000430982 SNAPC4Q5SXM2 1469 aa27.25■■□□□ 1.95
PTCD1-204ENST00000430982 TDRD9Q8NDG6 1382 aaKnown RBP27.24■■□□□ 1.95
PTCD1-204ENST00000430982 SOGA1O94964 1423 aa27.24■■□□□ 1.95
PTCD1-204ENST00000430982 SYNJ1O43426 1573 aa27.21■■□□□ 1.95
PTCD1-204ENST00000430982 MAGI1Q96QZ7 1491 aaPredicted RBP27.2■■□□□ 1.95
PTCD1-204ENST00000430982 FGD5Q6ZNL6 1462 aa27.17■■□□□ 1.94
PTCD1-204ENST00000430982 SYNJ2O15056 1496 aa27.11■■□□□ 1.93
PTCD1-204ENST00000430982 GRIN2BQ13224 1484 aa27.11■■□□□ 1.93
PTCD1-204ENST00000430982 CUX1P39880 1505 aa27.08■■□□□ 1.93
PTCD1-204ENST00000430982 CHMP7Q8WUX9 453 aaPredicted RBP27.08■■□□□ 1.93
PTCD1-204ENST00000430982 GAPVD1Q14C86 1478 aa27.01■■□□□ 1.91
PTCD1-204ENST00000430982 PBRM1Q86U86 1689 aa26.98■■□□□ 1.91
PTCD1-204ENST00000430982 AEBP2Q6ZN18 517 aaPredicted RBP26.97■■□□□ 1.91
PTCD1-204ENST00000430982 ABCA5Q8WWZ7 1642 aa26.9■■□□□ 1.9
PTCD1-204ENST00000430982 ABCA10Q8WWZ4 1543 aa26.87■■□□□ 1.89
PTCD1-204ENST00000430982 ERCC6L2Q5T890 1561 aa26.82■■□□□ 1.88
PTCD1-204ENST00000430982 GRIN2AQ12879 1464 aa26.78■■□□□ 1.88
PTCD1-204ENST00000430982 NUP160Q12769 1436 aa26.76■■□□□ 1.87
PTCD1-204ENST00000430982 CEP170Q5SW79 1584 aa26.75■■□□□ 1.87
PTCD1-204ENST00000430982 SHROOM2Q13796 1616 aa26.73■■□□□ 1.87
PTCD1-204ENST00000430982 ADAMTS12P58397 1594 aa26.72■■□□□ 1.87
PTCD1-204ENST00000430982 KIF13AQ9H1H9 1805 aa26.63■■□□□ 1.85
PTCD1-204ENST00000430982 WRNQ14191 1432 aaPredicted RBP eCLIP26.59■■□□□ 1.85
PTCD1-204ENST00000430982 FHAD1B1AJZ9 1412 aa26.58■■□□□ 1.85
PTCD1-204ENST00000430982 BIVM-ERCC5R4GMW8 1640 aa26.54■■□□□ 1.84
PTCD1-204ENST00000430982 ERICH3Q5RHP9 1530 aa26.53■■□□□ 1.84
PTCD1-204ENST00000430982 TOP2BQ02880 1626 aa26.51■■□□□ 1.83
PTCD1-204ENST00000430982 PRG4Q92954 1404 aaPredicted RBP26.45■■□□□ 1.82
PTCD1-204ENST00000430982 ABCC10Q5T3U5 1492 aa26.42■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms